Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9LYP	63514	2025-07-24	2025-02-20	3.6	3.97	3.62	3.7	0.004	0.88	0.0	0.05	11.36	0.01	2.150	8.36	0.00	8.1	91.9	0.0	-0.89	0.82	0.76	2.48	3.7	0.003	0.74	0.0	0.04	14.07	0.00	2.427	8.04	2.21	6.5	93.5	0.0	-0.11	1.03	0.85	0.81	2.95	4882	635	4	0	2	0	0	logfile
✔	9LYB	63525	2025-07-25	2025-02-19	3.16	2.28	3.00	2.2	0.003	0.60	0.0	0.04	12.56	0.00	2.109	9.11	0.00	2.8	97.2	0.0	0.50	0.72	0.72	1.95	2.0	0.002	0.58	0.0	0.04	15.66	0.00	2.584	5.97	2.35	2.5	97.4	0.1	1.44	1.25	0.79	0.79	2.09	8003	1037	5	0	0	0	0	logfile
✔	9LYD	63522	2025-07-24	2025-02-19	3.66	2.79	3.59	2.8	0.004	0.81	0.0	0.04	16.60	0.01	2.188	12.83	0.17	4.0	96.0	0.0	1.24	0.72	0.74	0.54	2.8	0.003	0.78	0.0	0.04	17.14	0.00	2.507	10.49	4.29	4.2	95.6	0.1	1.40	0.41	0.72	0.74	0.75	5636	746	2	0	0	0	0	logfile
✔	9LYC	63523	2025-07-28	2025-02-19	3.06	2.38	3.19	2.1	0.004	0.68	0.0	0.04	15.52	0.01	2.034	12.59	0.75	3.8	96.2	0.0	0.99	0.73	0.74	1.64	2.1	0.003	0.67	0.0	0.04	16.86	0.00	2.453	9.11	3.84	4.1	95.9	0.0	1.11	0.66	0.75	0.78	1.70	10056	1312	6	0	0	0	0	logfile
✔	9LX5	63466	2025-07-25	2025-02-17	3.6	3.83	3.56	3.8	0.004	0.59	0.0	0.05	17.83	0.00	2.230	7.68	4.22	11.4	88.6	0.0	-1.51	0.66	0.80	1.94	3.8	0.003	0.64	0.0	0.05	18.03	0.00	2.215	6.79	7.89	11.0	89.0	0.0	-1.73	0.25	0.66	0.80	2.14	7519	981	6	0	6	0	0	logfile
✔	9LWU	63459	2025-07-31	2025-02-17	3.5	3.70	3.50	3.8	0.006	1.10	0.0	0.06	19.56	0.01	2.176	9.77	1.93	4.3	95.1	0.6	-2.83	0.56	0.64	0.92	3.7	0.006	1.11	1.0	0.05	18.55	0.00	2.166	14.58	4.53	4.3	95.4	0.2	0.00	1.75	0.60	0.68	1.01	14120	1820	12	0	20	0	0	logfile
✔	9LWP	63455	2025-07-25	2025-02-16	2.93	3.16	2.99	3.2	0.002	0.50	0.0	0.04	14.80	0.00	2.104	8.42	0.95	3.2	96.6	0.2	0.93	0.54	0.73	2.99	3.2	0.003	0.54	0.0	0.04	15.96	0.00	2.568	7.91	3.66	3.8	96.1	0.1	0.99	0.34	0.54	0.74	2.87	6844	876	4	0	0	0	0	logfile
✔	9iC3	52828	2025-07-31	2025-02-14	2.96	3.09	—	3.4	0.003	0.56	0.0	0.04	13.62	0.00	2.200	9.22	0.85	3.2	96.8	0.0	0.31	0.79	0.71	2.09	3.4	0.003	0.63	0.0	0.04	16.50	0.00	2.259	9.07	2.48	2.7	97.3	0.0	0.94	0.59	0.79	0.75	1.87	13841	1627	6	41	4	0	0	logfile
✔	9N95	49160	2025-07-23	2025-02-10	3.65	3.88	3.56	3.9	0.004	0.77	0.0	0.04	16.88	0.00	2.201	15.12	0.41	7.9	91.6	0.5	0.00	0.56	0.75	0.75	3.9	0.003	0.64	0.0	0.04	17.35	0.00	2.434	8.72	4.33	9.0	90.9	0.2	0.91	0.84	0.57	0.76	1.06	4559	570	1	0	0	0	0	logfile
✔	9iAH	52781	2025-07-23	2025-02-10	3.17	3.15	2.12	3.2	0.008	0.78	0.0	0.05	11.66	0.00	2.501	1.54	0.00	0.0	100.0	0.0	-1.94	0.50	0.87	5.54	3.2	0.003	0.54	0.0	0.04	14.08	0.00	2.633	4.25	1.48	3.1	96.9	0.0	-2.61	0.33	0.46	0.84	5.54	1260	170	5	0	0	0	0	logfile
✔	9N93	49158	2025-07-24	2025-02-10	2.95	3.21	2.97	3.3	0.004	0.67	0.0	0.04	13.48	0.01	2.222	9.83	0.35	7.3	92.7	0.0	0.24	0.56	0.83	3.79	3.3	0.003	0.59	0.0	0.04	16.09	0.00	2.579	6.24	2.95	6.2	93.8	0.0	0.83	0.82	0.56	0.84	2.99	5275	650	1	0	0	0	0	logfile
✔	9LUP	63401	2025-07-25	2025-02-09	2.8	3.08	—	3.1	0.003	0.58	0.0	0.04	18.08	0.01	2.104	7.78	2.73	4.0	96.0	0.0	-0.14	0.67	0.77	2.43	3.1	0.002	0.52	0.0	0.04	17.83	0.00	2.540	5.29	2.84	4.0	96.0	0.0	1.17	0.29	0.66	0.76	2.07	8081	1020	5	0	1	0	0	logfile
✔	9LUN	63399	2025-07-25	2025-02-09	2.8	3.04	2.87	3.1	0.004	0.62	0.0	0.04	18.04	0.01	2.130	9.03	2.85	3.5	96.5	0.0	-1.02	0.66	0.76	2.36	3.1	0.003	0.60	0.0	0.04	17.89	0.00	2.536	5.71	2.38	3.0	97.0	0.0	0.50	0.32	0.69	0.79	2.08	7744	976	5	0	1	0	0	logfile
✔	9LUo	63400	2025-07-23	2025-02-09	3.07	3.26	3.09	3.2	0.010	1.05	0.0	0.03	17.37	0.00	2.201	8.86	0.00	4.0	96.0	0.0	1.57	0.58	0.71	0.93	3.3	0.002	0.56	0.0	0.04	17.66	0.00	2.613	8.07	2.53	4.0	96.0	0.0	2.01	0.83	0.57	0.71	1.28	2540	318	3	0	0	0	0	logfile
✔	9LUM	63398	2025-07-24	2025-02-09	2.66	2.85	2.68	2.9	0.010	1.15	0.0	0.04	16.81	0.01	2.212	4.31	1.98	3.4	96.6	0.0	1.05	0.71	0.84	3.00	2.9	0.002	0.48	0.0	0.04	16.45	0.00	2.507	3.32	1.98	2.1	97.8	0.1	1.57	0.79	0.70	0.84	3.05	6321	772	5	0	1	246	0	logfile
✔	9LU9	63392	2025-07-27	2025-02-08	3.3	3.70	3.51	3.7	0.009	1.43	3.0	0.15	19.98	0.03	2.265	8.31	11.48	1.7	98.3	0.0	-0.36	0.66	0.88	2.21	3.7	0.003	0.59	0.0	0.04	17.61	0.00	2.449	5.47	2.30	1.7	98.3	0.0	3.59	0.81	0.59	0.82	1.72	9858	1281	8	0	1	0	0	logfile
✔	9LUC	63394	2025-07-27	2025-02-08	3.5	3.84	3.62	3.9	0.010	1.49	2.0	0.09	17.83	0.03	2.239	8.46	11.92	2.6	97.3	0.1	-1.36	0.67	0.89	2.13	3.9	0.003	0.62	0.0	0.04	17.69	0.00	2.514	5.33	2.81	1.6	98.3	0.1	3.17	0.81	0.64	0.85	1.22	9584	1249	7	0	0	0	0	logfile
✔	9LUB	63393	2025-07-28	2025-02-08	3.3	3.69	3.45	3.7	0.009	1.41	3.0	0.09	17.48	0.03	2.121	9.42	10.75	2.1	97.9	0.0	-0.89	0.67	0.89	2.09	3.7	0.003	0.61	0.0	0.04	16.91	0.00	2.570	5.44	2.69	1.4	98.6	0.0	3.47	1.44	0.66	0.86	1.64	10113	1326	7	0	0	0	0	logfile
✔	9i8i	52724	2025-07-28	2025-02-05	2.75	2.58	2.76	2.5	0.003	0.94	0.0	0.05	18.88	0.01	2.054	12.11	2.32	5.5	94.5	0.0	0.11	0.75	0.75	1.06	2.7	0.003	0.82	0.0	0.04	19.68	0.01	2.529	9.31	4.99	5.4	94.6	0.0	0.48	0.66	0.76	0.77	1.04	10374	1338	6	0	0	0	0	logfile
✔	9N71	49081	2025-07-29	2025-02-05	3.2	3.36	3.02	3.4	0.005	0.72	0.0	0.05	15.89	0.00	2.287	4.53	0.48	2.3	97.7	0.0	-0.53	0.70	0.90	4.69	3.4	0.002	0.48	0.0	0.04	16.09	0.00	2.542	2.18	2.88	2.1	97.9	0.0	-0.25	1.58	0.69	0.90	4.91	11778	1584	6	0	0	0	0	logfile

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