Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9N5V	49040	2025-07-30	2025-02-04	2.76	2.50	2.97	1.4	0.014	1.09	0.0	0.04	12.02	0.00	2.215	6.33	4.24	3.9	96.1	0.0	-0.64	0.91	0.84	3.65	1.3	0.004	1.19	0.0	0.05	14.95	0.01	2.447	10.38	2.01	4.7	95.3	0.0	-0.44	0.61	0.93	0.88	3.02	12711	1601	5	0	14	0	0	logfile
✔	9N5U	49039	2025-07-31	2025-02-04	2.85	2.43	2.89	1.3	0.005	0.97	0.0	0.05	11.62	0.01	2.196	5.08	2.47	3.4	96.6	0.0	-0.70	0.92	0.87	4.26	1.4	0.009	0.88	0.0	0.04	15.22	0.00	2.477	7.47	1.34	2.7	97.3	0.0	0.08	0.53	0.93	0.90	3.22	13355	1692	6	0	14	0	0	logfile
✔	9i86	52708	2025-07-31	2025-02-04	2.75	3.05	2.76	3.0	0.007	0.61	0.0	0.05	15.98	0.00	2.055	6.53	0.00	2.3	97.7	0.0	-0.09	0.49	0.73	3.78	3.0	0.003	0.65	0.0	0.05	20.71	0.00	2.339	2.86	0.94	0.8	99.2	0.0	0.49	1.22	0.55	0.80	3.95	13618	810	8	40	0	0	6728	logfile
✔	9LSK	63358	2025-07-24	2025-02-04	2.9	3.78	3.03	3.6	0.004	0.68	1.0	0.05	11.95	0.00	2.185	9.35	0.31	2.1	97.9	0.0	1.52	0.69	0.88	2.76	3.6	0.003	0.61	0.0	0.04	14.36	0.00	2.616	7.60	2.14	2.2	97.8	0.0	2.15	0.39	0.66	0.87	1.68	6422	858	4	0	3	0	0	logfile
✔	9N59	48918	2025-07-26	2025-02-03	2.82	3.25	2.87	3.1	0.003	0.56	0.0	0.04	15.46	0.00	2.226	9.13	0.00	4.6	95.4	0.0	1.36	0.29	0.89	2.12	3.1	0.002	0.53	0.0	0.04	16.19	0.00	2.428	6.05	2.52	4.2	95.8	0.0	1.94	0.46	0.27	0.87	2.12	8088	1128	2	0	0	0	0	logfile
✔	9N49	48871	2025-07-24	2025-02-02	3.0	3.90	3.06	5.2	0.007	1.16	0.0	0.07	14.03	0.01	2.368	6.09	0.17	4.2	95.8	0.0	1.06	0.31	0.26	0.66	3.5	0.006	1.10	0.0	0.05	17.04	0.01	2.339	14.97	3.45	4.5	95.5	0.0	0.86	2.13	0.45	0.79	1.28	6509	925	6	0	0	0	0	logfile
✔	9i7S	52660	2025-07-29	2025-02-01	3.2	3.40	3.19	3.4	0.006	0.78	0.0	0.05	17.29	0.01	2.160	4.34	0.54	1.2	98.8	0.0	1.54	0.52	0.68	4.22	3.4	0.003	0.60	0.0	0.04	14.52	0.00	2.403	5.18	1.53	1.7	98.3	0.0	2.63	1.58	0.63	0.85	3.34	11338	1358	18	0	19	0	0	logfile
✔	9i7T	52661	2025-07-29	2025-02-01	3.8	4.06	3.77	4.0	0.007	0.84	0.0	0.05	17.42	0.01	2.194	5.05	0.18	1.4	98.5	0.2	1.55	0.58	0.74	2.43	4.0	0.008	0.95	0.0	0.05	15.84	0.01	2.245	14.83	1.90	2.1	97.9	0.0	1.26	1.35	0.63	0.82	2.30	11338	1358	20	0	19	0	0	logfile
✔	9i7P	52658	2025-07-26	2025-01-31	3.2	3.40	3.16	3.4	0.007	0.84	0.0	0.05	21.10	0.02	2.131	5.42	0.24	1.6	98.4	0.0	0.60	0.59	0.80	4.56	3.4	0.003	0.60	0.0	0.04	15.43	0.00	2.408	5.71	1.33	1.2	98.8	0.0	2.13	0.53	0.62	0.85	3.70	8644	1020	18	0	19	0	0	logfile
✔	9LRB	63324	2025-07-25	2025-01-30	2.77	2.92	2.83	2.9	0.002	0.47	0.0	0.04	14.23	0.00	2.243	2.73	0.91	1.8	98.2	0.0	1.14	0.69	0.80	3.40	2.9	0.002	0.56	0.0	0.04	16.64	0.00	2.576	4.66	2.63	2.7	97.3	0.0	1.47	2.01	0.69	0.81	3.16	8102	1018	6	0	1	0	0	logfile
✔	9LRC	63325	2025-07-23	2025-01-30	2.84	3.01	2.84	3.0	0.002	0.49	0.0	0.03	13.88	0.00	2.464	1.92	0.00	2.5	97.5	0.0	3.42	0.62	0.79	3.92	3.0	0.004	0.63	0.0	0.04	15.42	0.01	2.594	4.06	1.58	2.2	97.8	0.0	2.50	0.39	0.60	0.80	3.87	2328	282	2	0	1	1	0	logfile
✔	9LRD	63326	2025-07-26	2025-01-30	3.23	3.43	3.26	3.3	0.003	0.55	0.0	0.04	13.73	0.00	2.247	5.59	0.10	6.0	94.0	0.0	-1.44	0.63	0.73	1.63	3.4	0.004	0.76	0.0	0.04	16.07	0.00	2.374	8.64	2.62	4.3	95.7	0.0	0.15	0.87	0.65	0.75	1.62	8725	1103	6	0	1	0	0	logfile
✔	9LRE	63327	2025-07-26	2025-01-30	2.84	2.93	2.81	2.9	0.003	0.52	0.0	0.04	12.90	0.00	2.209	3.13	0.31	2.8	97.2	0.0	0.15	0.70	0.80	3.87	2.9	0.003	0.58	0.0	0.04	15.91	0.00	2.531	6.32	2.38	2.9	97.1	0.0	1.26	1.16	0.70	0.81	3.23	8845	1118	6	0	1	1	0	logfile
✔	9i6B	52652	2025-07-26	2025-01-29	2.7	2.86	2.71	2.9	0.007	0.90	0.0	0.06	21.11	0.02	2.288	6.28	0.00	1.0	99.0	0.0	0.90	0.58	0.83	5.23	2.9	0.002	0.53	0.0	0.04	15.85	0.00	2.473	5.14	0.97	1.4	98.6	0.0	2.49	0.47	0.58	0.84	3.87	8644	1020	18	0	19	0	0	logfile
✘	9i65	52650	2025-07-26	2025-01-29	4.1	4.36	3.98	4.4	0.003	0.66	0.0	0.05	11.38	0.00	2.162	11.35	0.00	11.3	88.2	0.5	-1.25	0.69	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8433	1215	9	0	0	0	0	logfile
✔	9N2E	48836	2025-07-24	2025-01-28	3.7	2.33	3.63	2.2	0.004	0.65	0.0	0.05	18.28	0.00	2.520	8.46	3.59	2.9	97.1	0.0	-0.02	0.68	0.72	2.37	2.2	0.003	0.64	0.0	0.04	18.32	0.00	2.526	7.02	4.16	3.4	96.6	0.0	0.14	0.37	0.67	0.72	2.03	4928	613	2	0	0	0	0	logfile
✔	9N2F	48837	2025-07-25	2025-01-28	3.5	2.39	3.39	2.2	0.004	0.71	1.0	0.05	18.69	0.00	2.415	10.57	5.19	6.3	93.5	0.2	-0.74	0.70	0.74	2.72	2.2	0.003	0.64	0.0	0.04	18.76	0.00	2.518	8.64	5.69	6.8	93.0	0.2	-0.10	1.30	0.72	0.74	2.58	7600	948	2	0	0	0	0	logfile
✔	9N17	48808	2025-07-24	2025-01-24	3.09	3.77	2.85	3.6	0.015	1.66	0.0	0.10	14.20	0.01	2.570	0.22	0.40	8.3	91.4	0.4	-1.34	0.48	0.77	5.31	3.5	0.003	0.59	0.0	0.04	11.75	0.00	2.404	1.74	1.62	6.0	94.0	0.0	-0.81	0.73	0.50	0.81	5.16	4454	268	4	0	13	0	2095	logfile
✔	9N0Y	48798	2025-07-29	2025-01-24	3.71	3.97	3.77	3.9	0.004	0.71	0.0	0.04	14.46	0.00	1.884	8.15	0.00	10.0	90.0	0.0	-3.71	0.79	0.84	1.21	3.9	0.004	0.66	0.0	0.04	16.39	0.00	2.551	7.26	1.99	6.6	93.4	0.0	-1.21	0.62	0.80	0.85	1.14	10792	1350	4	0	0	0	0	logfile
✔	9N0Z	48799	2025-07-29	2025-01-24	3.5	3.76	3.54	3.7	0.006	0.78	0.0	0.05	16.26	0.02	1.559	9.80	0.00	9.8	90.2	0.0	-2.66	0.72	0.82	1.59	3.7	0.003	0.68	0.0	0.04	17.58	0.00	2.424	6.43	3.05	5.9	94.1	0.1	-0.95	1.10	0.72	0.83	1.26	10847	1355	4	0	0	0	0	logfile

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