Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9N0Z	48799	2025-07-29	2025-01-24	3.5	3.76	3.54	3.7	0.006	0.78	0.0	0.05	16.26	0.02	1.559	9.80	0.00	9.8	90.2	0.0	-2.66	0.72	0.82	1.59	3.7	0.003	0.68	0.0	0.04	17.58	0.00	2.424	6.43	3.05	5.9	94.1	0.1	-0.95	1.10	0.72	0.83	1.26	10847	1355	4	0	0	0	0	logfile
✘	9N13	48804	2025-07-23	2025-01-24	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4424	269	4	0	12	0	2083	logfile
✔	9LoN	63250	2025-07-23	2025-01-23	3.0	2.99	2.19	3.1	0.009	0.65	0.0	0.05	13.10	0.00	2.359	2.29	0.00	4.7	95.3	0.0	-3.50	0.45	0.92	6.73	3.1	0.003	0.44	0.0	0.05	14.94	0.00	2.626	0.88	0.69	2.6	97.4	0.0	-1.37	0.90	0.44	0.92	6.58	2772	396	6	0	0	0	0	logfile
✔	9LMo	63219	2025-07-25	2025-01-19	3.2	3.60	2.85	3.4	0.020	1.63	0.0	0.08	10.36	0.01	1.882	6.75	0.13	2.6	97.4	0.0	0.92	0.72	0.79	2.50	3.4	0.003	0.69	0.0	0.04	15.78	0.00	2.510	9.02	3.40	2.6	97.4	0.0	2.11	3.86	0.75	0.85	2.00	7332	939	4	0	0	0	0	logfile
✔	9MX5	48710	2025-07-24	2025-01-17	3.1	3.96	3.22	3.7	0.003	0.56	0.0	0.04	18.21	0.00	2.169	8.83	1.32	4.2	95.7	0.2	2.06	0.84	0.85	1.94	3.7	0.005	0.72	0.0	0.04	18.22	0.00	2.396	7.95	1.49	4.9	94.9	0.2	1.74	0.99	0.84	0.86	1.68	6463	652	4	54	3	0	0	logfile
✔	9MX3	48708	2025-07-24	2025-01-17	3.0	3.93	3.03	3.5	0.003	0.63	0.0	0.04	17.07	0.00	2.208	6.38	1.68	3.8	96.2	0.0	1.64	0.86	0.83	1.60	3.5	0.002	0.60	0.0	0.04	17.24	0.00	2.242	5.00	2.52	3.9	96.1	0.0	2.14	0.33	0.86	0.82	1.24	5929	641	4	33	1	0	0	logfile
✔	9MW8	48697	2025-07-24	2025-01-17	3.3	4.53	3.31	4.0	0.002	0.63	0.0	0.04	18.27	0.00	2.077	13.98	1.33	3.3	96.6	0.2	1.50	0.85	0.75	0.46	4.0	0.002	0.64	0.0	0.04	18.43	0.00	2.491	9.78	1.83	2.8	96.9	0.3	1.69	1.30	0.85	0.76	0.43	6419	647	4	54	2	0	0	logfile
✔	9LKX	63187	2025-07-24	2025-01-16	3.76	3.91	3.78	3.8	0.003	0.64	0.0	0.04	14.63	0.01	2.286	7.56	0.18	7.3	92.7	0.0	-0.75	0.70	0.76	1.03	3.8	0.003	0.66	0.0	0.04	17.04	0.00	2.340	13.25	2.70	7.4	92.6	0.0	0.44	1.10	0.71	0.78	0.98	5105	650	2	0	0	0	0	logfile
✔	9MW6	48678	2025-07-24	2025-01-16	3.4	4.48	3.46	4.2	0.004	0.62	0.0	0.04	17.58	0.00	2.098	12.23	2.43	6.4	93.6	0.0	-0.15	0.78	0.78	1.20	4.1	0.002	0.63	0.0	0.04	17.85	0.00	2.568	8.70	1.83	6.8	93.2	0.0	0.05	0.93	0.78	0.78	1.28	5473	535	3	54	0	0	0	logfile
✔	9MW7	48691	2025-07-24	2025-01-16	3.4	4.43	3.48	3.9	0.008	0.62	0.0	0.04	18.41	0.00	2.138	15.61	1.01	9.2	90.6	0.2	-1.07	0.83	0.66	0.86	3.9	0.003	0.66	0.0	0.04	18.77	0.00	1.895	13.33	1.22	9.2	90.4	0.4	-1.39	1.00	0.84	0.67	1.05	5504	535	4	54	2	0	0	logfile
✔	9MUo	48639	2025-07-26	2025-01-14	3.3	3.88	3.31	3.7	0.005	0.81	0.0	0.05	17.64	0.01	2.216	14.39	1.45	5.3	94.3	0.4	-0.28	0.61	0.85	1.70	3.7	0.003	0.71	0.0	0.05	17.56	0.00	2.453	13.13	3.90	4.6	95.4	0.0	0.49	1.04	0.61	0.87	2.13	8410	1012	7	8	1	0	0	logfile
✔	9MUE	48630	2025-07-26	2025-01-13	4.0	4.21	3.13	4.2	0.005	0.81	0.0	0.05	18.80	0.01	2.101	15.54	1.00	4.9	94.5	0.6	0.03	0.66	0.86	—	4.2	0.003	0.67	0.0	0.04	18.61	0.00	2.508	12.03	3.12	6.4	93.6	0.0	0.00	0.90	0.67	0.87	—	8438	1012	8	8	2	0	0	logfile
✔	9MU4	48619	2025-07-30	2025-01-13	3.29	3.84	3.34	3.5	0.006	0.84	0.0	0.05	28.80	0.01	2.302	2.50	0.00	3.7	96.3	0.0	-1.86	0.90	0.86	2.88	3.5	0.004	0.61	0.0	0.03	29.06	0.00	2.290	8.71	1.91	4.6	95.4	0.0	2.04	1.22	0.91	0.88	2.04	12794	770	10	328	0	0	0	logfile
✔	9MTY	48616	2025-07-25	2025-01-12	3.05	2.52	2.94	2.9	0.009	1.16	0.0	0.08	21.34	0.01	2.052	2.43	0.39	2.4	97.2	0.3	-0.43	0.62	0.73	3.83	2.9	0.004	0.65	0.0	0.04	23.20	0.00	2.187	7.44	1.76	2.4	97.6	0.0	2.44	1.50	0.63	0.76	3.45	7106	586	9	112	4	0	0	logfile
✔	9MT6	48601	2025-07-29	2025-01-10	3.0	2.25	3.05	2.0	0.004	0.73	0.0	0.05	12.63	0.01	2.254	7.27	0.08	3.9	96.1	0.0	0.72	0.78	0.79	3.39	2.0	0.003	0.59	0.0	0.04	14.87	0.00	2.576	6.69	1.82	3.2	96.8	0.0	1.10	1.10	0.77	0.80	2.86	11243	1347	24	0	31	0	0	logfile
✔	9LGW	63074	2025-07-28	2025-01-10	2.7	2.88	2.71	2.9	0.004	0.59	0.0	0.05	14.83	0.00	2.279	4.69	1.62	5.2	94.8	0.0	-1.08	0.59	0.70	2.61	2.9	0.003	0.55	0.0	0.05	15.45	0.00	2.266	4.69	1.62	6.0	94.0	0.0	-0.69	0.38	0.59	0.70	2.55	10043	603	2	0	0	0	5083	logfile
✔	9LGM	63068	2025-07-25	2025-01-10	2.84	2.19	2.85	1.9	0.004	0.61	0.0	0.04	16.71	0.00	2.028	13.12	0.24	2.9	97.1	0.0	0.64	0.80	0.81	3.05	1.9	0.004	0.63	0.0	0.04	17.27	0.00	2.439	9.00	4.52	3.1	96.9	0.0	0.88	1.10	0.79	0.81	2.78	8061	1049	5	0	0	0	0	logfile
✔	9MT2	48598	2025-07-30	2025-01-10	2.9	2.23	2.88	1.9	0.005	0.68	0.0	0.04	12.22	0.01	2.123	9.02	0.08	4.0	96.0	0.0	0.87	0.74	0.74	3.14	2.0	0.004	0.67	0.0	0.04	13.96	0.00	2.483	8.93	1.66	5.0	95.0	0.0	0.67	0.40	0.73	0.75	2.98	11871	1410	24	0	42	0	0	logfile
✔	9MS8	48568	2025-07-27	2025-01-09	3.73	4.13	3.84	4.0	0.003	0.75	0.0	0.04	16.24	0.00	2.522	7.79	1.12	8.0	92.0	0.0	-0.91	0.65	0.82	2.19	4.0	0.003	0.75	0.0	0.04	17.09	0.00	2.428	9.57	4.06	7.6	92.4	0.0	-0.11	0.96	0.66	0.82	1.91	9290	1189	3	0	0	0	0	logfile
✔	9MR7	48554	2025-07-30	2025-01-07	3.56	4.58	3.62	3.7	0.003	0.67	0.0	0.05	12.26	0.01	2.240	3.62	0.22	4.1	95.9	0.0	-0.83	0.79	0.76	2.52	3.7	0.004	0.61	0.0	0.04	14.15	0.00	2.449	5.36	1.49	4.2	95.8	0.0	-0.13	1.69	0.86	0.83	2.04	12463	1605	12	0	0	0	0	logfile

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