Table showing results for July 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9MR7	48554	2025-07-30	2025-01-07	3.56	4.58	3.62	3.7	0.003	0.67	0.0	0.05	12.26	0.01	2.240	3.62	0.22	4.1	95.9	0.0	-0.83	0.79	0.76	2.52	3.7	0.004	0.61	0.0	0.04	14.15	0.00	2.449	5.36	1.49	4.2	95.8	0.0	-0.13	1.69	0.86	0.83	2.04	12463	1605	12	0	0	0	0	logfile
✔	9MQY	48544	2025-07-24	2025-01-06	3.0	3.64	3.04	3.5	0.007	0.75	0.0	0.05	12.52	0.01	2.375	0.79	0.67	2.6	97.4	0.0	-1.16	0.76	0.87	6.11	3.5	0.005	0.60	0.0	0.05	13.51	0.00	2.603	2.67	2.00	1.6	98.4	0.0	0.80	1.34	0.74	0.87	5.58	6448	894	4	0	2	0	0	logfile
✔	9LDR	63006	2025-07-25	2025-01-06	3.58	3.81	3.54	3.8	0.007	0.84	0.0	0.04	15.48	0.00	2.184	14.85	1.77	8.7	91.3	0.0	-2.99	0.65	0.83	1.44	3.8	0.003	0.67	0.0	0.04	16.36	0.00	2.523	7.66	2.53	5.1	94.9	0.0	0.58	0.98	0.63	0.78	0.64	7274	935	3	0	0	0	0	logfile
✔	9MQS	48538	2025-07-24	2025-01-06	3.1	3.38	3.07	3.3	0.009	1.12	0.0	0.09	28.91	0.01	2.080	48.08	0.00	0.0	0.0	0.0	—	0.62	0.66	—	3.5	0.005	0.83	0.0	0.04	25.08	0.01	2.065	18.16	0.00	0.0	0.0	0.0	—	1.05	0.65	0.72	—	5207	0	2	243	9	1	0	logfile
✔	9MQH	48524	2025-07-23	2025-01-03	3.9	4.08	3.69	4.0	0.003	0.59	0.0	0.04	15.16	0.00	2.206	4.68	3.92	3.2	96.8	0.0	1.41	0.55	0.80	1.35	4.0	0.003	0.56	0.0	0.04	16.02	0.00	2.638	4.44	5.39	2.9	97.1	0.0	2.34	0.36	0.54	0.79	0.74	2074	281	1	0	0	0	0	logfile
✔	9LBS	62955	2025-07-27	2025-01-03	3.41	2.53	3.40	2.2	0.004	0.77	0.0	0.05	17.05	0.01	2.215	8.06	0.69	12.1	87.5	0.5	-3.57	0.68	0.70	1.51	2.2	0.003	0.68	0.0	0.04	17.21	0.00	2.494	7.38	4.29	12.0	87.9	0.1	-3.11	0.31	0.70	0.73	1.45	6730	867	8	0	3	0	0	logfile
✔	9MQ6	48514	2025-07-28	2025-01-02	3.3	3.80	3.20	3.6	0.003	0.47	0.0	0.04	10.60	0.00	2.234	4.50	0.48	4.9	95.1	0.0	0.81	0.62	0.88	1.91	3.6	0.004	0.67	0.0	0.04	14.28	0.00	2.435	5.82	1.14	5.6	94.4	0.0	1.27	1.05	0.62	0.89	1.76	9917	1252	5	0	4	0	0	logfile
✔	9HVW	52444	2025-07-27	2025-01-02	3.1	3.42	3.15	3.4	0.004	0.82	0.0	0.05	16.16	0.01	2.573	6.17	1.53	4.7	95.3	0.0	-2.70	0.56	0.61	0.92	3.4	0.004	0.62	0.0	0.04	17.17	0.00	2.520	12.01	4.31	5.0	95.0	0.0	-1.78	1.12	0.64	0.75	2.14	8950	1149	8	0	0	0	0	logfile
✔	9LAE	62925	2025-07-24	2025-01-02	3.46	3.62	3.40	3.6	0.006	0.75	0.0	0.05	13.67	0.00	2.120	8.61	0.00	8.0	91.8	0.2	-3.66	0.52	0.71	3.84	3.6	0.005	1.46	2.0	0.05	16.38	0.00	2.074	9.12	3.47	7.4	92.6	0.0	-1.63	0.42	0.71	0.88	3.53	5000	645	6	0	1	0	0	logfile
✔	9LA7	62921	2025-07-28	2025-01-01	2.39	2.73	2.56	2.8	0.005	0.75	0.0	0.05	17.57	0.01	2.227	9.51	3.74	2.6	97.4	0.0	1.11	0.60	0.86	3.25	2.8	0.003	0.54	0.0	0.04	17.97	0.00	2.495	6.61	4.65	2.9	97.1	0.0	2.39	0.90	0.56	0.85	3.26	10340	1220	4	0	0	0	0	logfile
✔	9MPW	48507	2025-07-24	2024-12-31	3.37	4.15	3.54	3.8	0.005	0.79	0.0	0.05	13.37	0.01	2.554	2.31	0.00	3.9	96.1	0.0	-1.52	0.68	0.84	3.37	3.8	0.005	0.70	0.0	0.04	15.00	0.00	2.502	8.84	1.00	4.2	95.8	0.0	0.55	1.36	0.65	0.86	2.68	6336	818	6	0	7	0	0	logfile
✔	9L9P	62912	2025-07-27	2024-12-30	4.3	4.10	3.70	4.0	0.010	1.11	0.0	0.05	16.92	0.00	2.218	10.26	0.37	10.1	88.7	1.2	-1.91	0.42	0.71	—	4.0	0.010	0.93	0.0	0.05	14.16	0.00	2.506	10.21	0.00	12.2	87.2	0.6	-1.89	0.69	0.44	0.80	—	9999	1274	6	0	1	0	0	logfile
✔	9L99	62898	2025-07-30	2024-12-29	3.6	3.66	3.55	3.7	0.003	0.68	0.0	0.05	13.55	0.01	2.164	8.39	0.14	6.7	93.3	0.0	-2.75	0.65	0.83	2.90	3.7	0.003	0.62	0.0	0.05	15.03	0.00	2.308	6.23	4.75	6.3	93.7	0.0	-1.88	0.35	0.66	0.84	2.19	12710	1640	6	0	2	0	0	logfile
✔	9HVi	52435	2025-07-31	2024-12-29	2.46	3.27	2.46	3.1	0.004	0.70	0.0	0.05	16.40	0.00	2.013	8.76	1.01	2.7	97.3	0.0	0.11	0.79	0.80	1.39	3.0	0.003	0.66	0.0	0.04	15.19	0.00	2.069	6.29	1.30	2.9	97.1	0.0	0.53	0.67	0.82	0.87	3.09	13352	1636	12	0	35	0	0	logfile
✔	9L9A	62899	2025-07-30	2024-12-29	3.9	4.02	3.87	4.0	0.006	0.62	0.0	0.04	15.62	0.00	1.228	8.91	0.07	6.1	93.9	0.0	-1.93	0.70	0.84	1.78	4.0	0.004	0.68	0.0	0.05	16.39	0.00	2.226	6.51	6.09	6.4	93.6	0.0	-1.71	0.40	0.70	0.84	1.80	12723	1642	6	0	2	0	0	logfile
✔	9MoT	48481	2025-07-30	2024-12-27	3.15	2.63	3.06	3.1	0.004	0.80	0.0	0.05	13.94	0.01	2.447	19.20	0.29	12.2	87.8	0.0	-3.32	0.70	0.61	1.73	3.1	0.005	0.83	0.0	0.05	16.26	0.01	2.427	22.19	3.25	12.4	87.5	0.1	-3.48	1.02	0.71	0.63	1.39	12708	1561	6	0	8	0	0	logfile
✔	9HVC	52431	2025-07-23	2024-12-26	2.24	2.61	2.27	2.8	0.006	1.61	0.0	0.04	19.50	0.01	2.184	4.45	0.00	0.0	100.0	0.0	2.75	0.18	0.58	1.04	2.6	0.003	0.44	0.0	0.04	17.64	0.00	2.629	4.45	1.96	3.0	97.0	0.0	3.88	1.01	0.25	0.86	4.07	578	69	2	0	1	31	0	logfile
✘	9MNY	48443	2025-07-24	2024-12-24	2.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5332	675	7	0	1	0	0	logfile
✔	9L6C	62852	2025-07-27	2024-12-24	3.33	2.45	3.21	2.2	0.002	0.58	0.0	0.04	15.30	0.00	2.255	6.93	0.27	5.5	94.2	0.3	-1.01	0.69	0.74	2.79	2.1	0.004	0.60	0.0	0.04	15.77	0.00	2.581	6.18	3.57	7.1	92.7	0.2	-1.06	0.31	0.71	0.78	3.31	6766	874	8	0	2	0	0	logfile
✔	9MNZ	48444	2025-07-24	2024-12-24	2.73	2.24	2.80	2.0	0.020	1.50	0.0	0.09	14.22	0.01	2.151	11.27	0.70	11.5	88.5	0.0	-3.42	0.77	0.76	3.58	2.0	0.004	0.74	0.0	0.04	15.91	0.01	2.538	4.61	2.64	5.8	94.2	0.0	-1.14	0.36	0.79	0.79	2.90	5382	682	7	0	1	0	0	logfile

• ← previous
• Page 8 of 384
• next →