Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RK9	24495	2021-08-25	2021-07-22	2.32	2.78	—	2.8	0.008	0.69	0.0	0.05	15.89	0.01	2.150	7.34	0.69	2.9	97.1	0.0	-0.56	0.69	0.89	5.05	2.8	0.008	0.68	0.0	0.05	16.57	0.01	2.104	7.79	2.06	3.1	96.9	0.0	-0.47	0.27	0.59	0.86	5.03	247500	31380	60	0	0	0	0	logfile
✔	7RK8	24494	2021-08-25	2021-07-22	2.27	2.34	—	2.3	0.004	0.61	0.0	0.05	14.03	0.00	2.161	3.94	0.00	1.9	98.1	0.0	-0.56	0.76	0.89	5.98	2.3	0.004	0.63	0.0	0.05	15.82	0.00	2.077	3.53	0.94	2.6	97.4	0.0	-0.75	0.33	0.73	0.88	5.80	246720	31020	60	0	0	0	0	logfile
✘	7RH6	24456	2021-08-12	2021-07-16	3.5	3.79	—	3.7	0.008	1.39	9.0	0.25	15.10	0.01	1.060	15.81	1.14	7.5	92.2	0.3	-0.59	0.66	0.72	2.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	89469	5901	42	0	64	0	41917	logfile
✘	7RH5	24455	2021-08-11	2021-07-16	3.0	3.17	—	3.2	0.008	1.35	1.0	0.25	14.70	0.01	1.180	16.59	0.11	7.7	92.0	0.2	-0.68	0.70	0.81	3.62	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	48948	6072	43	0	68	0	0	logfile
✘	7RH7	24457	2021-08-12	2021-07-16	3.0	3.06	—	3.2	0.007	1.32	0.0	0.25	14.59	0.01	1.182	16.11	0.00	7.7	92.1	0.2	-0.61	0.55	0.70	2.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	93330	6072	44	0	68	0	44390	logfile
✔	7RB9	24400	2021-08-08	2021-07-05	3.76	4.01	3.83	3.9	0.002	0.57	0.0	0.04	14.64	0.00	2.228	9.24	0.00	3.3	96.7	0.0	0.58	0.59	0.85	1.62	3.9	0.003	0.61	0.0	0.04	15.94	0.00	2.062	8.71	0.33	4.1	95.9	0.0	0.60	2.16	0.60	0.87	1.88	14193	1786	7	0	6	0	0	logfile
✔	7RB0	24391	2021-08-10	2021-07-05	2.98	3.22	—	3.2	0.009	0.76	0.0	0.05	13.45	0.00	2.115	12.75	0.00	4.9	95.1	0.0	-1.42	0.72	0.82	3.78	3.2	0.003	0.64	0.0	0.05	16.38	0.00	2.061	9.89	0.99	3.9	96.1	0.0	-0.30	0.50	0.75	0.85	3.29	16350	2082	6	0	0	0	0	logfile
✔	7RB2	24392	2021-08-10	2021-07-05	3.27	3.28	—	3.2	0.008	0.74	0.0	0.05	14.45	0.00	2.075	7.65	0.33	5.1	94.9	0.0	-1.06	0.74	0.85	4.44	3.2	0.004	0.56	0.0	0.05	15.64	0.00	2.181	6.40	0.05	2.2	97.8	0.0	0.22	3.93	0.77	0.86	3.82	16386	2082	6	0	0	0	0	logfile
✔	7RB8	24399	2021-08-08	2021-07-05	3.63	3.84	3.65	3.8	0.003	0.67	0.0	0.05	14.20	0.00	1.921	8.73	0.07	5.4	94.6	0.0	-0.17	0.59	0.86	2.65	3.8	0.003	0.65	0.0	0.04	15.59	0.00	2.110	8.06	0.13	5.2	94.8	0.0	0.53	0.52	0.60	0.87	2.29	14226	1786	8	0	8	0	0	logfile
✔	7P16	13157	2021-08-07	2021-07-01	4.3	4.40	3.53	4.3	0.003	0.63	0.0	0.04	15.19	0.00	2.178	7.29	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.004	0.68	0.0	0.04	14.57	0.00	2.161	11.41	0.00	4.1	95.9	0.0	1.03	1.47	0.65	0.77	—	3621	444	3	0	1	0	0	logfile
✔	7P14	13155	2021-08-07	2021-07-01	3.66	3.82	3.50	3.8	0.006	0.80	0.0	0.04	16.89	0.00	2.295	7.18	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	3.8	0.010	1.29	0.0	0.04	17.05	0.00	1.660	11.37	0.00	3.8	96.2	0.0	2.65	0.44	0.62	0.79	1.42	3796	454	3	0	3	0	0	logfile
✔	7RA8	24347	2021-08-09	2021-06-30	3.1	3.60	3.30	3.5	0.014	1.50	0.0	0.10	10.66	0.01	2.367	0.69	0.60	1.8	97.9	0.3	-0.04	0.72	0.74	3.47	3.5	0.005	0.64	0.0	0.05	13.10	0.00	2.305	4.69	0.30	2.2	97.7	0.1	0.08	1.62	0.73	0.79	2.96	24036	3405	24	0	54	0	0	logfile
✔	7R91	24322	2021-08-08	2021-06-28	2.83	3.10	2.89	3.1	0.003	0.55	0.0	0.04	14.99	0.00	2.207	5.01	0.19	2.5	97.5	0.0	0.49	0.61	0.86	3.66	3.0	0.003	0.60	0.0	0.04	15.58	0.00	2.084	5.65	0.84	2.3	97.7	0.0	0.97	0.49	0.61	0.89	3.59	14320	1786	7	0	6	0	0	logfile
✔	7R8V	24321	2021-08-08	2021-06-27	2.82	3.03	2.83	3.0	0.003	0.54	0.0	0.04	14.13	0.00	2.028	5.39	0.00	2.7	97.3	0.0	0.86	0.75	0.89	3.97	2.9	0.005	0.64	0.0	0.05	15.15	0.00	2.038	6.41	0.32	3.7	96.3	0.0	0.51	1.07	0.74	0.91	4.01	14845	1855	10	0	10	0	0	logfile
✔	7R8M	24318	2021-08-09	2021-06-26	3.4	3.69	—	3.6	0.004	0.75	0.0	0.05	13.80	0.02	1.934	15.67	0.54	7.8	92.2	0.1	-1.74	0.69	0.71	1.51	3.7	0.011	1.05	1.0	0.05	15.79	0.01	1.629	18.72	0.11	8.1	91.8	0.0	-1.62	0.50	0.70	0.75	1.46	26323	3411	15	0	33	0	0	logfile
✘	7R8N	24319	2021-08-10	2021-06-26	3.55	3.89	—	3.8	0.008	1.52	7.0	0.09	13.80	0.01	2.148	12.48	1.48	5.9	94.1	0.0	-1.20	0.68	0.63	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29719	3813	16	0	35	0	0	logfile
✔	7R8o	24320	2021-08-10	2021-06-26	3.5	3.86	—	3.9	0.008	1.48	13.0	0.09	12.77	0.02	1.876	11.84	1.03	3.6	96.3	0.1	-0.25	0.71	0.80	2.30	3.9	0.003	0.66	0.0	0.04	15.16	0.00	2.127	9.65	0.44	3.6	96.4	0.0	0.16	0.71	0.72	0.83	2.27	29964	3804	20	0	48	0	0	logfile
✔	7R7S	24302	2021-08-10	2021-06-25	4.23	4.48	—	4.3	0.004	0.96	0.0	0.06	15.64	0.01	2.294	6.49	0.03	9.3	90.6	0.1	-3.16	0.77	0.68	—	4.3	0.003	0.77	0.0	0.05	14.93	0.01	2.126	20.68	0.03	9.7	90.2	0.0	-1.84	1.75	0.81	0.78	—	33239	4207	14	0	12	0	0	logfile
✔	7R7N	24299	2021-08-07	2021-06-25	3.95	4.08	3.93	4.1	0.010	1.26	0.0	0.07	9.44	0.00	2.553	0.58	0.45	3.2	96.8	0.0	0.00	0.81	0.77	3.23	4.0	0.005	0.79	0.0	0.05	14.92	0.01	2.191	10.27	0.45	7.0	93.0	0.0	-1.15	1.35	0.84	0.80	2.40	2790	391	4	0	3	0	0	logfile
✔	7R7T	24304	2021-08-10	2021-06-25	4.5	4.85	—	4.6	0.004	1.03	0.0	0.06	15.89	0.01	2.286	6.34	0.00	7.8	92.2	0.0	-3.13	0.81	0.73	—	4.6	0.003	0.79	0.0	0.05	15.03	0.00	2.106	17.96	0.00	7.4	92.6	0.0	-1.39	0.96	0.82	0.75	—	35351	4470	13	0	12	0	0	logfile

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