Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9CPo	45805	2024-08-08	2024-07-18	3.5	3.83	3.56	3.9	0.003	0.49	0.0	0.04	15.92	0.00	2.159	4.11	0.00	4.7	95.3	0.0	0.08	0.66	0.77	2.63	3.8	0.004	0.51	0.0	0.04	16.10	0.00	2.361	3.28	2.11	5.2	94.8	0.0	0.01	0.26	0.68	0.79	2.24	24089	1392	7	63	2	0	11624	logfile
✔	9CMH	45748	2024-08-02	2024-07-15	4.0	4.53	4.03	4.1	0.004	0.87	0.0	0.05	14.79	0.00	2.092	27.43	0.77	5.8	94.2	0.0	-1.26	0.61	0.66	—	4.1	0.003	0.78	0.0	0.04	15.85	0.00	2.523	19.55	4.09	4.5	95.5	0.0	-0.93	1.42	0.62	0.68	—	3553	466	2	0	0	0	0	logfile
✔	9CKV	45655	2024-08-05	2024-07-09	3.19	3.71	3.28	3.6	0.005	0.66	0.0	0.05	16.35	0.00	1.734	1.63	0.00	4.8	95.2	0.0	-0.12	0.67	0.71	3.86	3.6	0.003	0.53	0.0	0.04	14.92	0.00	1.924	2.08	0.28	4.8	95.2	0.0	-0.30	0.52	0.71	0.77	3.41	13268	872	11	0	26	0	6375	logfile
✔	9CK3	45639	2024-08-02	2024-07-08	2.04	2.11	1.97	2.0	0.004	0.64	0.0	0.05	19.96	0.00	2.532	3.88	2.08	1.5	98.5	0.0	-0.15	0.59	0.90	8.74	2.0	0.007	0.69	0.0	0.07	18.98	0.00	2.626	3.46	4.69	4.5	95.5	0.0	-0.55	0.33	0.59	0.90	8.59	5748	840	12	0	0	0	0	logfile
✔	9CiA	45615	2024-08-03	2024-07-03	3.39	3.87	3.61	3.8	0.004	0.80	0.0	0.05	13.15	0.01	2.263	5.57	0.12	4.4	95.6	0.0	-1.69	0.58	0.73	2.21	3.8	0.005	0.73	0.0	0.04	16.14	0.00	2.461	12.36	5.31	5.9	94.1	0.0	-0.53	0.56	0.60	0.75	1.65	7918	1025	13	0	1	0	0	logfile
✔	9Ci8	45614	2024-08-04	2024-07-02	3.01	3.35	3.04	3.4	0.004	0.80	0.0	0.05	16.95	0.01	2.258	6.33	4.93	3.7	96.3	0.0	-0.84	0.59	0.67	1.46	3.4	0.005	0.72	1.0	0.05	17.13	0.00	2.298	11.45	5.11	4.0	96.0	0.0	-0.22	0.99	0.61	0.72	1.49	10466	1382	12	0	0	0	0	logfile
✔	9C9Y	45376	2024-08-02	2024-06-16	3.35	2.51	3.35	2.2	0.005	0.66	0.0	0.04	16.02	0.01	2.041	6.79	0.15	6.0	93.9	0.1	-0.01	0.77	0.79	2.18	2.2	0.004	0.65	0.0	0.04	18.29	0.00	2.062	4.93	2.54	4.7	95.3	0.0	0.16	0.39	0.78	0.82	1.64	6225	773	4	8	2	0	0	logfile
✔	9CA1	45379	2024-08-03	2024-06-16	3.26	2.47	3.27	2.2	0.004	0.59	0.0	0.04	15.56	0.01	2.120	5.31	0.00	4.2	95.7	0.1	0.28	0.77	0.80	2.18	2.2	0.003	0.59	0.0	0.04	17.49	0.00	2.111	5.23	3.60	3.7	96.3	0.0	0.26	0.31	0.79	0.83	1.90	6265	773	5	10	2	0	0	logfile
✔	9CA0	45378	2024-08-03	2024-06-16	3.48	2.47	3.49	2.2	0.004	0.58	0.0	0.04	14.95	0.01	2.104	6.67	0.15	4.2	95.8	0.0	-0.73	0.77	0.78	2.35	2.2	0.004	0.57	0.0	0.04	17.36	0.00	2.492	6.35	2.25	3.9	96.1	0.0	-0.52	0.35	0.79	0.82	1.63	6265	773	5	10	1	0	0	logfile
✘	9FQ0	50642	2024-08-11	2024-06-14	4.67	7.96	4.91	5.9	0.005	1.10	1.0	0.13	20.50	0.01	2.021	31.09	2.23	4.5	94.9	0.6	-0.08	0.25	0.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	31676	2961	17	356	1	0	0	logfile
✔	8ZWL	60532	2024-08-02	2024-06-13	3.4	3.16	3.10	3.5	0.008	0.92	0.0	0.06	11.35	0.00	2.273	8.06	0.00	5.4	94.6	0.0	-4.31	0.30	0.81	4.89	3.4	0.004	0.66	0.0	0.05	13.88	0.00	2.615	4.81	2.27	4.5	95.5	0.0	-3.14	0.56	0.33	0.85	4.75	3468	456	6	0	0	0	0	logfile
✔	8ZWH	60527	2024-08-02	2024-06-13	2.5	3.26	—	3.0	0.011	0.91	0.0	0.06	9.45	0.00	2.284	18.21	0.00	3.8	96.2	0.0	-4.12	0.42	0.85	2.37	3.0	0.003	0.55	0.0	0.05	11.48	0.00	2.601	7.28	1.32	5.7	94.3	0.0	-3.15	1.18	0.43	0.85	3.73	2268	330	6	0	0	0	0	logfile
✔	8ZX6	60539	2024-08-02	2024-06-13	3.5	3.02	2.57	3.5	0.004	0.77	0.0	0.05	12.49	0.00	2.338	7.64	0.00	2.5	97.5	0.0	-4.38	0.32	0.81	5.08	3.5	0.006	0.78	0.0	0.05	14.32	0.00	2.640	6.79	1.26	7.9	92.1	0.0	-3.42	0.72	0.34	0.83	5.03	3468	456	6	0	0	0	0	logfile
✔	8ZWM	60533	2024-08-02	2024-06-13	3.2	3.28	2.96	3.3	0.005	0.67	0.0	0.05	11.92	0.00	2.167	4.43	0.00	2.3	97.7	0.0	-3.69	0.35	0.90	6.45	3.3	0.004	0.58	0.0	0.05	14.40	0.00	2.606	3.43	1.02	2.5	97.5	0.0	-2.56	1.26	0.33	0.91	6.49	3435	453	6	0	0	0	0	logfile
✔	8ZWi	60528	2024-08-02	2024-06-13	3.0	2.75	2.12	3.2	0.011	0.86	0.0	0.06	11.26	0.00	2.261	8.83	0.00	6.8	93.2	0.0	-3.70	0.44	0.86	5.14	3.2	0.002	0.48	0.0	0.05	15.33	0.00	2.539	4.42	1.16	2.8	97.2	0.0	-1.65	0.91	0.43	0.86	5.32	2526	366	6	0	0	0	0	logfile
✔	8ZWK	60530	2024-08-02	2024-06-13	3.4	2.76	2.79	3.4	0.003	0.60	0.0	0.05	16.32	0.00	2.253	13.62	0.00	8.2	91.8	0.0	-5.39	0.34	0.79	3.91	3.4	0.003	0.59	0.0	0.05	16.93	0.00	2.604	5.73	5.19	7.9	92.1	0.0	-3.66	1.50	0.36	0.82	4.29	2760	378	8	6	0	0	0	logfile
✔	8ZWJ	60529	2024-08-02	2024-06-13	3.1	2.80	2.17	3.2	0.006	0.74	0.0	0.05	15.84	0.00	2.218	14.51	0.00	10.1	89.9	0.0	-4.10	0.44	0.86	4.88	3.2	0.002	0.51	0.0	0.05	15.31	0.00	2.531	2.69	2.22	7.9	92.1	0.0	-2.36	1.29	0.42	0.86	4.68	2760	378	8	6	0	0	0	logfile
✔	9C8R	45308	2024-08-05	2024-06-12	2.83	3.00	2.86	3.0	0.003	0.55	0.0	0.04	15.12	0.00	2.220	3.55	0.95	2.4	97.6	0.0	-0.07	0.70	0.90	4.57	3.0	0.003	0.75	0.0	0.04	15.51	0.00	1.653	2.71	1.26	2.0	98.0	0.0	0.19	0.23	0.73	0.91	4.23	12220	1544	3	0	0	0	0	logfile
✔	9FoR	50628	2024-08-02	2024-06-12	2.75	2.54	2.63	2.8	0.012	2.11	5.0	0.10	12.86	0.01	2.496	1.38	3.17	7.4	91.5	1.1	-5.01	0.49	0.92	7.55	2.7	0.003	0.84	0.0	0.04	15.89	0.00	2.632	1.38	1.59	6.6	93.4	0.0	-5.29	0.38	0.53	0.91	6.21	3405	490	10	0	0	0	0	logfile
✔	9FoF	50621	2024-08-02	2024-06-11	2.9	2.55	2.80	3.2	0.011	1.53	6.0	0.08	13.93	0.01	2.332	9.79	1.56	4.2	94.8	1.0	-4.04	0.27	0.57	3.42	2.8	0.005	0.96	0.0	0.05	17.66	0.00	2.577	2.26	2.34	8.9	91.1	0.0	-4.75	1.98	0.51	0.89	5.37	4176	600	12	0	0	0	0	logfile

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