Table showing results for August 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B60	44233	2024-08-04	2024-03-23	2.57	2.37	2.54	2.6	0.002	0.45	0.0	0.03	16.62	0.00	2.245	4.52	1.66	3.0	97.0	0.0	3.66	0.54	0.78	3.02	2.6	0.003	0.51	0.0	0.04	16.82	0.00	2.583	4.33	2.31	3.2	96.8	0.0	3.71	0.86	0.56	0.81	3.08	10461	1348	8	0	0	0	0	logfile
✔	9B6A	44251	2024-08-07	2024-03-23	3.35	2.74	3.31	3.1	0.003	0.50	0.0	0.04	16.79	0.00	2.196	7.53	0.26	2.1	97.9	0.0	2.10	0.57	0.79	2.33	3.1	0.002	0.49	0.0	0.04	16.93	0.00	2.499	7.40	2.16	2.4	97.6	0.0	2.29	0.35	0.59	0.81	2.41	18493	2378	8	0	0	0	0	logfile
✔	8YRo	39546	2024-08-09	2024-03-21	3.27	3.54	3.32	3.5	0.006	1.01	2.0	0.06	15.19	0.01	1.176	12.50	0.58	5.9	93.7	0.4	-3.94	0.65	0.63	1.54	3.5	0.004	0.71	0.0	0.05	16.44	0.00	2.464	11.42	2.20	6.6	93.4	0.0	-1.96	1.38	0.71	0.73	1.53	27775	3589	9	0	0	0	0	logfile
✔	8YRP	39547	2024-08-09	2024-03-21	3.64	4.24	3.77	3.9	0.009	1.39	4.0	0.08	15.38	0.01	1.316	13.78	1.44	7.2	92.3	0.5	-2.67	0.73	0.59	0.46	3.9	0.003	0.72	0.0	0.05	16.39	0.00	2.453	16.13	3.09	6.5	93.5	0.0	-1.64	1.37	0.74	0.61	0.38	25462	3266	5	0	0	0	0	logfile
✔	8YRJ	39543	2024-08-02	2024-03-21	3.87	4.13	3.94	4.1	0.003	0.54	0.0	0.04	19.29	0.00	2.240	4.49	0.00	3.6	96.0	0.4	2.39	0.49	0.67	1.42	4.1	0.004	0.85	0.0	0.05	16.95	0.00	2.499	12.82	3.24	4.5	94.6	0.9	0.82	1.66	0.54	0.73	1.27	3748	454	7	0	9	0	0	logfile
✔	9B3D	44135	2024-08-08	2024-03-19	3.41	4.16	3.57	3.8	0.005	0.88	0.0	0.05	15.33	0.01	2.099	1.98	0.00	3.7	96.2	0.1	-3.30	0.79	0.76	1.16	3.8	0.003	0.72	0.0	0.04	15.98	0.00	1.881	9.11	0.82	3.5	96.4	0.1	0.65	0.79	0.80	0.80	1.08	23621	2967	14	0	12	0	0	logfile
✔	9B39	44132	2024-08-09	2024-03-18	3.84	4.26	4.00	4.0	0.009	1.54	0.0	0.07	17.94	0.01	2.184	7.62	0.44	15.3	83.2	1.5	-5.60	0.71	0.80	1.55	4.0	0.004	0.93	0.0	0.05	14.51	0.00	2.382	13.44	1.94	13.7	86.0	0.4	-2.15	1.57	0.71	0.80	1.10	27522	3372	22	0	58	0	0	logfile
✔	9B34	44125	2024-08-02	2024-03-18	3.58	3.87	3.58	3.9	0.007	1.47	0.0	0.08	12.86	0.01	2.121	8.00	0.49	23.6	74.5	1.9	-5.95	0.68	0.68	1.73	3.8	0.006	1.49	1.0	0.06	16.83	0.01	2.041	20.49	6.17	23.0	76.0	1.1	-4.29	2.01	0.72	0.73	0.92	3619	474	4	0	4	0	0	logfile
✔	9B33	44124	2024-08-02	2024-03-18	4.07	4.25	4.00	4.2	0.007	1.56	0.0	0.08	13.12	0.01	2.141	8.98	0.49	23.2	75.3	1.5	-6.09	0.63	0.62	—	4.1	0.004	1.00	0.0	0.05	12.87	0.01	2.033	18.94	0.00	22.1	77.0	0.9	-4.65	1.21	0.69	0.69	—	3619	474	4	0	4	0	0	logfile
✔	9B35	44128	2024-08-05	2024-03-18	3.4	3.76	3.53	3.7	0.008	1.24	0.0	0.06	10.75	0.01	2.244	5.09	0.65	11.7	87.4	0.9	-5.51	0.68	0.81	3.08	3.7	0.003	0.75	0.0	0.04	14.39	0.00	2.479	9.58	1.68	10.4	89.5	0.1	-0.70	1.58	0.67	0.81	1.91	14132	1780	8	0	0	0	0	logfile
✘	9B38	44131	2024-08-08	2024-03-18	3.36	3.64	3.42	3.6	0.008	1.30	0.0	0.08	20.14	0.01	2.270	4.66	0.76	9.0	90.6	0.4	-5.67	0.71	0.77	2.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22670	2720	26	0	74	0	0	logfile
✔	9EoG	19854	2024-08-02	2024-03-14	3.0	3.00	2.79	3.2	0.009	1.63	6.0	0.10	12.85	0.01	2.445	5.03	4.48	6.7	93.3	0.0	-4.10	0.39	0.90	4.14	3.2	0.003	0.77	0.0	0.05	15.56	0.00	2.601	7.40	0.75	4.7	95.3	0.0	-1.64	1.10	0.36	0.88	3.00	3522	462	6	0	0	0	0	logfile
✔	9EoE	19852	2024-08-02	2024-03-14	2.3	2.15	2.26	2.2	0.009	1.54	2.0	0.10	14.88	0.01	2.621	4.14	4.41	8.0	92.0	0.0	-3.08	0.21	0.80	6.35	2.2	0.004	0.72	0.0	0.05	16.64	0.01	2.632	2.51	2.94	5.3	94.7	0.0	-1.85	1.25	0.27	0.83	7.06	595	77	1	0	0	0	0	logfile
✔	9B27	44099	2024-08-08	2024-03-14	3.51	4.14	3.65	3.8	0.004	0.82	0.0	0.05	15.44	0.01	1.519	2.38	0.23	3.7	96.1	0.1	-3.27	0.79	0.79	1.00	3.7	0.003	0.67	0.0	0.04	16.05	0.00	1.900	7.11	0.78	4.3	95.7	0.0	0.82	1.68	0.80	0.81	0.89	23828	2991	14	0	12	0	0	logfile
✔	9Eo4	19845	2024-08-03	2024-03-14	2.66	2.89	2.68	3.0	0.006	0.72	0.0	0.04	15.98	0.02	1.915	5.57	0.87	1.8	98.2	0.0	1.45	0.49	0.83	4.04	3.0	0.003	0.49	0.0	0.04	14.95	0.00	2.079	4.68	0.66	0.7	99.3	0.0	1.55	0.82	0.56	0.87	4.55	8781	546	2	0	7	4	4322	logfile
✔	9Eo7	19846	2024-08-02	2024-03-14	2.8	2.99	2.48	3.0	0.009	1.59	1.0	0.10	12.22	0.01	2.583	3.31	1.47	6.7	93.3	0.0	-4.16	0.28	0.88	5.19	3.0	0.004	0.60	0.0	0.05	14.11	0.00	2.525	6.71	1.47	1.3	98.7	0.0	-1.88	0.68	0.27	0.88	3.98	595	77	1	0	0	0	0	logfile
✔	9Eo9	19849	2024-08-02	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.003	0.79	0.0	0.05	14.70	0.00	2.549	3.75	2.21	2.0	98.0	0.0	-2.43	1.06	0.29	0.79	3.65	1190	154	2	0	0	0	0	logfile
✔	9EoH	19855	2024-08-02	2024-03-14	2.8	3.08	2.71	3.1	0.009	1.45	6.0	0.09	11.76	0.01	2.465	4.31	0.00	9.7	90.3	0.0	-3.95	0.48	0.89	6.19	3.1	0.005	0.82	0.0	0.05	17.35	0.00	2.533	7.61	2.82	4.9	95.1	0.0	-2.62	1.14	0.42	0.88	5.87	3414	444	6	0	0	0	0	logfile
✘	9ENQ	19838	2024-08-02	2024-03-13	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5743	707	6	4	4	7	0	logfile
✘	9ENP	19837	2024-08-04	2024-03-13	2.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11552	1338	7	48	4	7	0	logfile

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