Table showing results for August 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9P4Z	71290	2025-08-22	2025-06-17	2.83	2.98	2.83	3.0	0.004	0.62	0.0	0.05	16.92	0.00	2.034	4.27	0.00	1.7	98.3	0.0	1.11	0.48	0.83	2.09	3.0	0.004	0.59	0.0	0.04	15.74	0.00	2.165	9.45	3.81	1.7	98.3	0.0	1.91	0.94	0.48	0.84	1.66	3167	407	2	0	4	0	0	logfile
✔	9P3Y	71259	2025-08-26	2025-06-14	3.3	3.27	—	1.8	0.003	0.64	0.0	0.05	11.50	0.00	2.286	3.48	0.10	3.1	96.9	0.0	-0.63	0.89	0.81	1.98	1.6	0.005	0.78	0.0	0.05	14.11	0.00	2.427	6.40	2.34	4.3	95.7	0.0	-0.33	1.08	0.93	0.91	3.11	34636	4464	28	0	32	0	0	logfile
✔	9P3i	71241	2025-08-26	2025-06-13	2.35	3.28	2.47	3.0	0.006	0.76	0.0	0.06	16.90	0.01	2.057	4.74	0.77	3.1	96.8	0.1	-0.28	0.77	0.90	3.95	3.0	0.003	0.57	0.0	0.04	14.70	0.00	2.484	3.23	1.81	2.5	97.5	0.0	0.44	0.28	0.77	0.90	3.65	31608	3964	32	0	60	452	0	logfile
✔	9Ri9	53990	2025-08-26	2025-06-11	2.85	3.48	2.91	3.2	0.003	0.58	0.0	0.04	14.32	0.01	2.246	4.06	0.39	1.4	98.6	0.0	1.09	0.84	0.88	3.41	3.2	0.002	0.52	0.0	0.04	14.98	0.00	2.555	4.32	0.87	1.4	98.6	0.0	1.47	1.22	0.83	0.88	3.30	41886	5208	12	0	6	0	0	logfile
✔	9RiA	53991	2025-08-25	2025-06-11	3.2	3.63	—	3.3	0.002	0.52	0.0	0.04	15.12	0.00	2.542	4.10	0.96	1.5	98.5	0.0	-0.24	0.86	0.78	2.85	3.3	0.002	0.56	0.0	0.04	15.88	0.00	2.511	6.69	1.44	2.0	98.0	0.0	1.35	1.05	0.88	0.85	2.33	24721	3075	7	0	3	0	0	logfile
✔	9VEB	64996	2025-08-22	2025-06-09	3.56	3.90	3.61	3.9	0.003	0.53	0.0	0.04	14.49	0.00	2.255	4.37	0.23	1.1	98.9	0.0	0.91	0.48	0.72	2.18	3.9	0.003	0.52	0.0	0.04	15.42	0.00	2.544	4.55	2.91	1.6	98.4	0.0	1.45	0.81	0.64	0.81	2.17	8046	1086	2	0	0	0	0	logfile
✔	9VDC	64982	2025-08-24	2025-06-08	3.4	2.92	—	3.7	0.003	0.47	0.0	0.04	16.38	0.00	2.423	3.80	1.38	6.9	93.1	0.0	1.09	0.74	0.83	1.87	3.7	0.003	0.48	0.0	0.04	16.36	0.00	2.425	4.17	4.49	7.3	92.7	0.0	0.83	0.33	0.74	0.84	1.78	16540	1091	4	0	0	0	8443	logfile
✔	9P0A	71067	2025-08-22	2025-06-06	4.2	3.57	3.94	1.7	0.004	0.80	0.0	0.05	15.19	0.01	2.060	7.59	1.92	14.3	85.7	0.0	-3.71	0.68	0.73	—	1.4	0.005	0.86	0.0	0.05	13.02	0.00	2.518	12.48	0.00	15.9	84.1	0.0	-3.78	1.28	0.68	0.74	—	4035	564	3	0	0	0	0	logfile
✔	9oYS	71033	2025-08-22	2025-06-04	3.06	3.05	2.85	3.1	0.002	0.41	0.0	0.04	13.41	0.00	2.610	6.89	0.00	3.3	96.7	0.0	-2.71	0.37	0.83	4.99	3.1	0.006	0.61	0.0	0.05	13.46	0.00	2.658	8.52	8.33	6.1	93.9	0.0	-3.30	1.13	0.39	0.85	4.30	1218	192	6	0	0	0	0	logfile
✔	9oUT	70881	2025-08-26	2025-05-29	4.3	4.68	4.30	4.3	0.004	0.90	0.0	0.05	13.34	0.00	2.504	4.69	0.05	5.6	94.2	0.2	-2.12	0.81	0.70	—	4.3	0.003	0.66	0.0	0.04	13.66	0.00	2.402	12.27	0.00	6.7	93.2	0.1	-0.79	1.30	0.82	0.72	—	36539	4614	15	0	0	0	0	logfile
✔	9oUU	70882	2025-08-26	2025-05-29	4.3	4.68	4.25	4.3	0.005	0.81	0.0	0.05	15.51	0.01	1.825	7.19	6.17	5.3	94.4	0.3	-1.24	0.81	0.72	—	4.3	0.002	0.68	0.0	0.04	13.78	0.00	2.385	10.43	0.00	6.0	93.9	0.1	-0.55	1.00	0.82	0.74	—	35456	4478	15	0	0	0	0	logfile
✔	9oUW	70883	2025-08-22	2025-05-29	3.2	3.56	3.23	3.4	0.004	0.86	0.0	0.05	16.36	0.00	2.239	8.14	3.49	4.0	95.8	0.2	-1.66	0.74	0.81	2.39	3.4	0.003	0.63	0.0	0.04	16.60	0.00	2.410	8.46	5.23	4.8	95.1	0.1	-1.44	0.42	0.74	0.81	2.36	7706	956	8	0	0	0	0	logfile
✔	9V7V	64825	2025-08-23	2025-05-28	3.6	4.07	3.60	4.1	0.002	0.48	0.0	0.04	12.36	0.00	2.567	6.59	2.88	6.5	93.5	0.0	-0.78	0.69	0.76	1.72	4.1	0.003	0.59	0.0	0.04	14.67	0.00	2.474	8.84	3.63	8.4	91.5	0.1	-0.72	1.12	0.69	0.76	1.37	8912	1196	8	0	4	0	0	logfile
✔	9oTS	70857	2025-08-24	2025-05-27	3.2	3.28	3.14	4.0	0.005	1.28	46.0	0.11	11.81	0.01	2.298	6.43	0.00	6.4	93.6	0.0	-2.32	0.52	0.73	1.97	4.0	0.003	0.61	0.0	0.04	16.06	0.00	2.373	4.83	3.27	4.9	95.1	0.0	-1.57	0.80	0.54	0.76	1.88	17238	2109	6	0	0	0	0	logfile
✔	9oTo	70843	2025-08-25	2025-05-27	2.03	2.81	2.01	2.4	0.003	0.63	0.0	0.04	15.86	0.00	1.788	2.95	1.15	4.1	95.9	0.0	0.14	0.89	0.90	4.37	2.4	0.002	0.63	0.0	0.04	16.33	0.00	2.002	2.50	1.22	3.1	96.9	0.0	0.64	0.92	0.88	0.89	3.85	29730	3720	20	0	30	0	0	logfile
✔	9V5R	64793	2025-08-24	2025-05-26	2.92	2.44	2.99	2.1	0.003	0.83	0.0	0.04	16.97	0.00	2.403	10.42	1.90	2.7	97.3	0.0	0.39	0.77	0.73	1.29	2.2	0.004	0.86	0.0	0.05	17.27	0.00	2.448	11.92	4.04	4.1	95.9	0.0	0.40	0.50	0.76	0.74	1.06	23153	3059	3	0	0	0	0	logfile
✔	9V5H	64789	2025-08-25	2025-05-26	4.0	2.94	4.07	2.6	0.004	1.02	0.0	0.05	16.84	0.01	2.358	19.09	2.21	4.6	95.4	0.0	-1.42	0.70	0.61	—	2.5	0.003	0.89	0.0	0.05	17.28	0.00	2.359	16.55	4.86	4.8	95.2	0.0	-0.97	0.70	0.71	0.66	—	29508	3726	12	0	0	0	0	logfile
✔	9oRE	70773	2025-08-25	2025-05-21	4.13	4.40	4.08	4.3	0.011	1.89	35.0	0.08	15.09	0.02	1.586	9.85	5.63	7.7	90.1	2.2	-1.00	0.83	0.77	—	4.3	0.004	0.65	0.0	0.04	12.61	0.00	2.275	7.33	0.08	8.5	91.1	0.4	-1.21	0.65	0.83	0.77	—	23776	1547	10	0	8	0	11842	logfile
✔	9oPV	70725	2025-08-22	2025-05-20	3.4	4.00	6.56	3.7	0.002	0.53	0.0	0.03	14.95	0.00	2.387	8.63	0.00	0.0	100.0	0.0	6.08	0.43	0.70	0.95	3.7	0.003	0.80	0.0	0.04	18.29	0.00	2.471	16.28	4.76	0.3	99.7	0.0	4.46	1.67	0.44	0.75	1.05	6145	780	10	0	0	0	0	logfile
✔	9R95	53853	2025-08-23	2025-05-19	3.2	3.61	3.40	3.5	0.004	0.66	0.0	0.05	20.50	0.00	2.121	5.91	1.51	3.1	96.8	0.1	1.38	0.78	0.83	1.39	3.5	0.003	0.55	0.0	0.04	20.59	0.00	2.523	5.34	1.81	2.5	97.4	0.1	2.03	0.33	0.82	0.87	1.12	14520	1568	6	100	1	0	0	logfile

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