Table showing results for September 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DT3	27690	2022-09-01	2022-07-25	3.3	3.99	3.55	3.7	0.004	0.64	0.0	0.04	14.39	0.00	2.125	10.81	0.00	8.2	91.8	0.0	-0.65	0.78	0.83	2.90	3.7	0.004	0.64	0.0	0.04	16.10	0.00	2.103	12.68	0.00	8.0	92.0	0.0	-0.55	0.40	0.79	0.85	2.81	3821	485	4	0	3	0	0	logfile
✔	8DJM	27461	2022-09-01	2022-07-01	3.23	3.66	3.31	3.6	0.030	1.55	2.0	1.03	15.73	0.00	1.844	8.38	0.82	3.7	96.3	0.0	-2.26	0.49	0.75	3.22	3.7	0.003	1.13	0.0	0.12	15.97	0.00	2.189	7.02	0.14	2.7	97.3	0.0	1.46	0.95	0.61	0.82	2.48	7032	862	7	0	8	0	0	logfile
✔	8DJK	27460	2022-09-01	2022-06-30	3.33	3.77	3.32	3.7	0.029	1.56	1.0	1.02	15.07	0.01	1.327	7.39	0.82	5.0	95.0	0.0	-1.84	0.48	0.73	2.65	3.7	0.003	1.13	0.0	0.12	15.26	0.00	2.233	6.68	0.00	3.4	96.6	0.0	1.13	0.49	0.62	0.80	2.00	7091	870	7	0	8	0	0	logfile
✘	8DH6	27430	2022-09-02	2022-06-25	2.94	3.31	3.02	3.3	0.006	1.04	0.0	0.05	14.94	0.01	1.241	12.48	0.15	4.9	95.1	0.1	0.12	0.66	0.83	3.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	12901	1560	16	0	17	0	0	logfile
✔	8DH7	27431	2022-09-01	2022-06-25	2.99	3.24	3.02	3.3	0.003	0.59	0.0	0.05	12.96	0.01	2.117	6.73	0.55	2.8	97.1	0.1	0.73	0.76	0.86	4.31	3.2	0.004	0.58	0.0	0.05	15.74	0.00	2.011	7.52	1.88	3.0	96.9	0.1	0.55	0.34	0.75	0.88	3.82	8274	1052	2	0	0	0	0	logfile
✔	8DGF	27422	2022-09-02	2022-06-23	2.9	2.47	3.10	2.7	0.009	1.21	0.0	0.06	14.26	0.01	2.088	1.48	0.53	2.2	97.8	0.0	-0.06	0.48	0.56	2.47	2.4	0.004	0.66	0.0	0.04	16.52	0.00	2.162	8.67	1.98	3.3	96.7	0.0	0.18	0.83	0.48	0.57	1.81	64958	7902	12	0	8	0	0	logfile
✔	8DGC	27421	2022-09-05	2022-06-23	3.4	3.02	3.70	3.0	0.006	0.96	2.0	0.05	13.60	0.01	1.993	1.61	0.14	1.9	98.1	0.0	-0.33	0.51	0.52	1.53	3.0	0.002	0.60	0.0	0.04	16.08	0.00	1.998	7.39	0.15	2.6	97.4	0.0	0.39	1.73	0.53	0.60	1.07	81600	10216	16	0	16	0	0	logfile
✔	8A8M	15233	2022-09-01	2022-06-23	4.0	5.84	4.31	4.3	0.004	0.89	0.0	0.05	17.75	0.00	2.218	29.38	1.56	8.5	91.4	0.2	-2.63	0.78	0.54	—	4.4	0.005	0.95	0.0	0.05	17.97	0.01	1.851	45.03	0.87	10.6	89.2	0.2	-2.64	0.75	0.83	0.74	—	5244	647	4	0	6	0	0	logfile
✔	7Y7i	33666	2022-09-02	2022-06-22	3.42	3.09	3.34	3.3	0.004	0.57	0.0	0.04	28.78	0.00	2.234	9.04	0.15	1.9	98.1	0.0	2.18	0.64	0.77	1.32	3.2	0.004	0.61	0.0	0.04	29.08	0.00	2.185	9.09	0.29	2.2	97.8	0.0	2.25	0.69	0.69	0.80	1.99	12445	824	12	286	0	0	0	logfile
✔	7Y6V	33649	2022-09-02	2022-06-21	3.3	4.21	3.47	3.6	0.003	0.60	0.0	0.05	13.10	0.00	2.149	10.16	0.00	5.7	94.0	0.2	-0.46	0.64	0.82	2.69	3.6	0.003	0.56	0.0	0.05	14.62	0.00	2.170	10.11	0.19	6.4	93.4	0.2	-0.50	0.34	0.64	0.83	2.60	9988	1224	16	0	45	0	0	logfile
✔	7Y6S	33646	2022-09-04	2022-06-21	3.1	4.17	3.22	3.3	0.003	0.60	0.0	0.05	14.29	0.00	2.147	9.47	0.31	4.3	95.5	0.1	-0.64	0.86	0.85	2.88	3.3	0.004	0.58	0.0	0.05	15.24	0.00	2.169	8.73	0.12	4.2	95.8	0.0	0.23	0.32	0.86	0.86	2.69	24852	3012	42	0	120	0	0	logfile
✔	7Y6U	33648	2022-09-02	2022-06-21	3.2	4.00	3.27	3.5	0.003	0.53	0.0	0.04	13.29	0.00	2.170	7.50	0.00	5.5	94.2	0.3	-0.28	0.66	0.83	3.27	3.5	0.004	0.57	0.0	0.04	14.57	0.00	2.166	8.99	0.10	5.7	93.9	0.3	-0.56	0.31	0.67	0.84	2.91	9915	1224	13	0	40	0	0	logfile
✔	7Y45	33601	2022-09-04	2022-06-14	3.3	3.31	3.23	3.3	0.011	1.45	0.0	0.07	19.08	0.01	2.265	13.47	11.22	10.0	89.3	0.7	-3.83	0.71	0.77	1.68	3.3	0.003	0.59	0.0	0.04	16.47	0.00	2.139	6.46	0.09	2.7	97.3	0.0	0.81	0.85	0.73	0.83	2.02	22638	2654	22	0	78	6	0	logfile
✔	7Y42	33600	2022-09-04	2022-06-13	3.45	3.86	3.62	3.8	0.006	0.83	0.0	0.05	14.45	0.01	2.121	11.84	0.59	9.5	90.5	0.0	-3.02	0.77	0.81	2.57	3.8	0.003	0.59	0.0	0.05	15.86	0.00	2.150	8.99	0.16	6.1	93.9	0.0	-1.96	0.40	0.78	0.82	1.86	23058	2904	6	0	30	0	0	logfile
✔	8D7X	27237	2022-09-02	2022-06-07	3.4	3.65	3.41	3.5	0.006	0.65	1.0	0.05	13.45	0.00	2.219	9.05	0.60	8.6	91.2	0.2	-2.20	0.74	0.76	3.37	3.5	0.004	0.58	0.0	0.05	14.58	0.00	2.136	7.98	0.24	7.2	92.7	0.1	-1.69	0.32	0.81	0.83	2.56	10108	1484	2	0	1	0	0	logfile
✔	8D80	27241	2022-09-02	2022-06-07	3.6	3.97	3.35	3.6	0.004	0.63	0.0	0.05	14.79	0.01	2.212	8.85	0.75	5.7	93.7	0.6	-1.72	0.89	0.85	3.20	3.6	0.004	0.57	0.0	0.04	15.78	0.00	2.183	7.04	0.28	5.7	94.0	0.3	-1.44	0.51	0.89	0.85	3.02	11230	1542	5	0	3	0	0	logfile
✔	8D7Y	27238	2022-09-02	2022-06-07	3.4	3.72	3.45	3.6	0.003	0.58	0.0	0.05	13.76	0.00	2.276	11.22	0.72	6.8	92.6	0.6	-2.04	0.76	0.77	2.82	3.6	0.004	0.59	0.0	0.05	14.82	0.00	2.252	7.46	0.48	7.5	92.3	0.1	-1.88	0.37	0.80	0.83	2.80	10086	1484	2	0	1	0	0	logfile
✔	8D81	27242	2022-09-01	2022-06-07	3.9	4.14	3.89	4.1	0.004	0.65	0.0	0.05	14.71	0.00	2.266	9.98	1.32	7.1	92.4	0.6	-2.23	0.73	0.74	2.42	4.1	0.004	0.62	0.0	0.04	16.23	0.00	2.152	9.43	0.51	7.6	92.1	0.3	-1.79	0.50	0.76	0.81	2.07	9248	1198	2	0	2	0	0	logfile
✔	7Y12	33554	2022-09-01	2022-06-06	3.1	2.87	3.11	3.0	0.003	0.57	1.0	0.04	15.81	0.00	2.086	10.17	0.22	3.4	96.6	0.0	0.86	0.62	0.78	2.84	3.0	0.003	0.55	1.0	0.04	16.42	0.00	2.103	10.58	0.34	2.8	97.2	0.0	0.87	0.25	0.62	0.78	2.52	8501	1110	6	0	3	0	0	logfile
✔	7Y15	33557	2022-09-01	2022-06-06	2.9	3.05	2.85	3.1	0.003	0.56	0.0	0.04	16.24	0.00	2.248	8.21	2.70	2.2	97.8	0.0	1.26	0.67	0.84	3.40	3.1	0.002	0.50	0.0	0.04	16.50	0.00	2.254	8.51	3.26	2.0	98.0	0.0	1.45	0.19	0.67	0.84	3.02	8495	1109	6	0	3	0	0	logfile

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