Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9B6E	44256	2024-09-25	2024-03-25	2.91	3.48	2.86	3.3	0.005	0.77	0.0	0.05	12.59	0.00	1.988	6.27	0.15	4.5	95.5	0.0	1.79	0.68	0.77	2.75	3.3	0.003	0.52	0.0	0.04	13.93	0.00	2.407	5.88	2.39	5.0	95.0	0.0	1.79	0.64	0.69	0.79	2.76	55244	3716	8	0	20	0	26380	logfile
✔	9B6i	44260	2024-09-25	2024-03-25	3.26	3.70	3.19	3.6	0.005	0.79	0.0	0.05	12.46	0.00	2.031	9.07	0.17	2.4	97.6	0.0	1.86	0.67	0.80	1.94	3.6	0.002	0.48	0.0	0.04	13.67	0.00	2.404	5.34	1.49	3.4	96.6	0.0	1.75	0.47	0.63	0.76	1.98	55320	3424	8	0	24	0	27072	logfile
✔	9B6G	44258	2024-09-25	2024-03-25	2.81	3.36	2.89	3.3	0.007	0.82	0.0	0.06	11.77	0.00	2.108	5.44	0.15	2.6	97.4	0.0	2.73	0.64	0.74	3.07	3.2	0.004	0.55	0.0	0.04	13.77	0.00	2.310	6.27	1.52	4.2	95.7	0.1	2.04	0.63	0.68	0.79	2.57	54152	3660	8	0	28	0	25668	logfile
✔	9B6D	44255	2024-09-25	2024-03-25	3.3	3.65	3.19	3.6	0.005	0.82	0.0	0.06	12.33	0.00	2.027	6.39	0.49	3.1	96.9	0.0	1.86	0.72	0.81	2.12	3.5	0.005	0.64	0.0	0.04	12.87	0.00	2.244	3.94	1.28	5.3	94.7	0.0	1.95	1.23	0.73	0.83	2.45	54584	3732	8	0	20	0	25920	logfile
✔	9ERN	19927	2024-09-23	2024-03-24	2.5	2.72	2.52	2.6	0.009	1.38	0.0	0.08	11.58	0.01	2.539	0.00	3.03	2.7	97.3	0.0	-2.81	0.43	0.92	6.38	2.7	0.004	0.65	0.0	0.05	16.39	0.00	2.595	1.99	1.26	1.1	98.9	0.0	-1.72	0.98	0.43	0.91	5.64	3444	450	6	0	0	0	0	logfile
✔	9ERM	19926	2024-09-23	2024-03-24	2.3	2.49	2.28	2.5	0.009	1.43	0.0	0.09	11.15	0.01	2.641	0.85	3.03	4.1	95.9	0.0	-2.04	0.45	0.94	7.10	2.5	0.002	0.62	0.0	0.05	16.47	0.00	2.640	3.07	1.52	2.5	97.5	0.0	-1.27	0.54	0.43	0.93	6.40	2870	375	5	0	0	0	0	logfile
✘	9B64	44245	2024-09-28	2024-03-23	3.56	2.72	3.47	3.4	0.003	0.64	0.0	0.04	16.81	0.01	2.201	9.65	0.15	2.6	97.4	0.0	1.70	0.61	0.81	1.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18493	2378	8	0	0	0	0	logfile
✔	9B61	44234	2024-09-28	2024-03-23	2.81	3.15	2.76	3.1	0.005	0.80	0.0	0.04	17.30	0.00	2.154	11.12	3.10	2.7	97.3	0.0	1.40	0.63	0.78	1.89	3.1	0.003	0.69	0.0	0.04	17.27	0.00	2.502	9.67	2.33	2.5	97.5	0.0	1.61	0.40	0.65	0.82	1.88	18447	2384	8	0	0	0	0	logfile
✔	9B69	44250	2024-09-28	2024-03-23	3.69	3.29	3.52	3.3	0.003	0.49	0.0	0.04	16.28	0.00	2.177	5.70	0.36	3.0	97.0	0.0	0.73	0.67	0.80	3.44	3.3	0.004	0.56	0.0	0.04	15.24	0.00	2.394	6.07	3.91	3.8	96.2	0.0	0.27	0.91	0.69	0.82	3.55	11370	1496	9	0	11	0	0	logfile
✔	9B67	44248	2024-09-28	2024-03-23	3.39	2.74	3.34	3.3	0.003	0.48	0.0	0.04	16.88	0.00	2.168	6.31	0.26	2.3	97.7	0.0	1.73	0.59	0.82	2.61	3.3	0.002	0.50	0.0	0.04	17.09	0.00	2.556	5.79	2.63	2.2	97.8	0.0	2.35	0.87	0.59	0.81	2.22	18435	2372	8	0	0	0	0	logfile
✔	9B6A	44251	2024-09-28	2024-03-23	3.35	2.74	3.31	3.1	0.003	0.50	0.0	0.04	16.79	0.00	2.196	7.53	0.26	2.1	97.9	0.0	2.10	0.57	0.79	2.33	3.1	0.002	0.49	0.0	0.04	16.93	0.00	2.499	7.40	2.16	2.4	97.6	0.0	2.29	0.35	0.59	0.81	2.41	18493	2378	8	0	0	0	0	logfile
✔	9B68	44249	2024-09-28	2024-03-23	3.6	3.60	3.54	3.6	0.003	0.61	0.0	0.04	16.03	0.00	2.203	6.44	0.27	2.9	97.1	0.0	-0.07	0.73	0.82	3.47	3.6	0.002	0.55	0.0	0.04	15.21	0.00	2.448	5.02	2.31	2.8	97.2	0.0	0.46	0.40	0.74	0.83	3.03	11364	1496	9	0	11	0	0	logfile
✔	9B5Z	44232	2024-09-28	2024-03-23	2.71	2.93	2.67	2.9	0.003	0.56	0.0	0.04	17.45	0.00	2.227	8.03	2.18	2.6	97.3	0.0	1.82	0.70	0.86	2.45	2.9	0.003	0.60	0.0	0.04	17.44	0.00	2.482	7.30	2.23	2.8	97.2	0.0	2.20	0.93	0.68	0.86	2.35	18680	2406	8	0	0	0	0	logfile
✔	9B5B	44206	2024-09-23	2024-03-22	3.31	3.84	3.35	3.7	0.003	0.44	0.0	0.04	9.36	0.00	1.782	2.27	1.29	3.9	96.1	0.0	1.85	0.82	0.82	2.04	3.7	0.004	0.57	0.0	0.04	12.45	0.00	2.474	6.20	1.84	3.5	96.5	0.0	2.10	1.62	0.82	0.84	2.00	4871	599	4	0	1	0	0	logfile
✔	9B57	44202	2024-09-23	2024-03-22	3.37	3.88	3.36	3.7	0.003	0.47	0.0	0.04	10.22	0.00	1.831	2.48	1.29	4.4	95.6	0.0	1.13	0.81	0.80	2.15	3.7	0.003	0.57	0.0	0.04	13.49	0.00	2.499	6.40	2.39	3.9	96.1	0.0	1.27	1.21	0.81	0.81	1.51	4871	599	4	0	1	0	0	logfile
✔	9B56	44201	2024-09-23	2024-03-22	3.35	3.89	3.39	3.8	0.003	0.46	0.0	0.04	10.30	0.00	1.794	2.89	1.29	5.2	94.8	0.0	1.28	0.81	0.80	2.19	3.8	0.002	0.58	0.0	0.04	13.28	0.00	2.530	5.99	1.47	3.2	96.8	0.0	1.37	0.54	0.84	0.84	1.90	4871	599	4	0	1	0	0	logfile
✔	9B5L	44216	2024-09-25	2024-03-22	3.3	4.02	3.61	3.8	0.004	0.49	0.0	0.04	10.25	0.00	1.933	2.48	1.42	2.2	97.8	0.0	1.42	0.80	0.81	2.28	3.8	0.002	0.55	0.0	0.04	13.99	0.00	2.441	5.05	1.33	2.4	97.6	0.0	1.34	1.64	0.82	0.84	2.04	10117	1283	6	0	2	0	0	logfile
✔	9B5X	44228	2024-09-25	2024-03-22	4.16	4.88	4.31	4.2	0.002	0.44	0.0	0.04	9.37	0.00	2.006	2.74	1.51	1.9	98.1	0.0	0.97	0.89	0.81	—	4.2	0.002	0.54	0.0	0.04	10.93	0.00	1.921	6.75	0.00	2.5	97.5	0.0	1.66	1.30	0.91	0.84	—	9527	1207	5	0	4	0	0	logfile
✔	9B5N	44218	2024-09-25	2024-03-22	3.12	3.59	3.17	3.5	0.003	0.47	0.0	0.04	9.09	0.00	2.000	2.16	0.66	2.5	97.2	0.3	1.07	0.79	0.84	2.92	3.5	0.003	0.56	0.0	0.04	13.08	0.00	1.966	4.17	2.17	2.3	97.7	0.1	1.25	1.64	0.74	0.81	2.28	9527	1207	5	0	4	0	0	logfile
✔	9B5U	44225	2024-09-25	2024-03-22	3.67	4.16	3.87	3.9	0.004	0.47	0.0	0.04	9.22	0.00	1.989	3.01	1.70	1.7	98.3	0.0	1.42	0.83	0.82	2.51	3.9	0.003	0.59	0.0	0.04	12.42	0.00	1.867	4.80	1.04	1.9	98.1	0.0	1.81	1.27	0.85	0.84	1.53	9527	1207	5	0	4	0	0	logfile

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