Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8YGH	39250	2024-09-26	2024-02-26	2.77	3.71	2.80	3.3	0.003	0.64	0.0	0.04	16.16	0.00	2.230	9.85	1.74	4.3	95.7	0.0	0.53	0.90	0.88	2.42	3.3	0.004	0.64	0.0	0.04	16.42	0.00	2.403	7.64	1.21	4.5	95.5	0.0	0.39	0.30	0.90	0.88	2.28	12244	1510	2	0	0	0	0	logfile
✔	9ASN	43820	2024-09-26	2024-02-26	3.2	4.03	3.21	3.2	0.005	0.61	0.0	0.04	17.26	0.00	2.197	6.23	0.00	3.6	96.4	0.0	1.14	0.77	0.69	2.28	3.2	0.004	0.54	0.0	0.04	17.41	0.00	2.262	4.26	0.66	3.4	96.6	0.0	1.54	0.31	0.83	0.86	2.01	11697	1184	6	97	4	2	0	logfile
✔	8YGE	39245	2024-09-26	2024-02-26	2.76	3.69	2.79	3.2	0.006	0.59	0.0	0.04	17.86	0.00	1.476	6.74	1.62	4.7	95.2	0.1	0.62	0.90	0.89	2.27	3.2	0.003	0.60	0.0	0.04	18.13	0.00	2.040	6.25	1.32	3.9	96.0	0.1	0.97	0.87	0.90	0.89	2.11	13479	1558	8	40	5	0	0	logfile
✘	8YGJ	39253	2024-09-29	2024-02-26	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19466	1777	6	241	0	0	0	logfile
✔	9ASH	43814	2024-09-29	2024-02-25	2.58	2.83	2.69	2.9	0.005	0.64	0.0	0.04	16.63	0.00	1.963	10.97	0.00	6.8	93.1	0.1	-0.64	0.70	0.76	2.77	2.9	0.004	0.60	0.0	0.04	18.47	0.00	1.923	9.21	1.95	6.4	93.6	0.0	-0.32	0.35	0.71	0.82	2.21	22309	2624	14	61	5	2	0	logfile
✔	9ASB	43811	2024-09-28	2024-02-24	3.4	2.15	—	2.9	0.005	0.67	0.0	0.04	13.48	0.00	2.168	9.24	0.00	3.4	96.6	0.0	-0.23	0.79	0.79	3.28	2.9	0.004	0.59	0.0	0.04	15.52	0.00	2.289	7.57	1.75	3.4	96.6	0.0	-0.07	0.38	0.81	0.82	2.92	18185	2243	13	0	26	0	0	logfile
✔	9ARG	43781	2024-09-29	2024-02-23	4.05	4.35	4.12	4.2	0.002	0.57	0.0	0.04	9.08	0.00	2.028	3.98	4.82	4.4	95.6	0.0	-2.99	0.70	0.67	—	4.2	0.003	0.67	0.0	0.04	10.00	0.00	2.550	6.54	0.00	5.9	94.1	0.0	-0.69	1.12	0.72	0.72	—	21008	3166	4	0	0	0	0	logfile
✔	8YF1	39207	2024-09-25	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.59	0.0	0.04	16.72	0.00	2.605	9.63	1.96	2.4	97.6	0.0	1.43	0.30	0.43	0.64	0.59	9187	1156	4	0	2	0	0	logfile
✔	9ARi	43783	2024-09-29	2024-02-23	3.9	4.18	4.02	4.1	0.007	1.12	45.0	0.07	10.71	0.01	1.816	12.63	9.33	6.9	92.9	0.3	-3.31	0.70	0.72	1.20	4.1	0.004	0.70	0.0	0.04	12.76	0.00	2.439	7.07	5.87	8.4	91.6	0.0	-1.04	1.23	0.70	0.72	1.23	20756	3178	6	0	0	0	0	logfile
✘	9ARF	43780	2024-09-29	2024-02-23	3.13	3.32	3.17	3.3	0.010	1.16	42.0	0.08	11.19	0.01	1.985	8.25	5.16	4.6	95.3	0.1	-3.34	0.69	0.76	3.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23032	3166	10	0	6	0	0	logfile
✔	8YF0	39206	2024-09-25	2024-02-23	3.49	3.73	3.58	3.7	0.003	0.59	0.0	0.04	14.65	0.00	2.271	10.72	0.00	2.8	97.2	0.0	0.97	0.52	0.61	0.74	3.7	0.003	0.68	0.0	0.04	16.70	0.00	2.468	12.21	2.47	2.8	97.2	0.0	1.04	0.43	0.54	0.65	0.61	9181	1159	2	0	0	0	0	logfile
✔	9ARH	43782	2024-09-29	2024-02-23	3.69	4.00	3.71	4.0	0.013	1.58	74.0	0.11	12.97	0.01	1.335	19.19	8.98	7.4	92.3	0.4	-3.17	0.70	0.73	1.23	4.0	0.003	0.70	0.0	0.04	14.49	0.00	2.444	7.29	4.54	8.0	92.0	0.1	-0.90	1.62	0.69	0.73	1.10	22792	3182	10	0	6	0	0	logfile
✔	9ARE	43779	2024-09-28	2024-02-23	3.72	4.00	3.78	3.9	0.007	0.98	36.0	0.07	11.57	0.01	2.020	10.72	5.24	4.8	95.1	0.1	-2.47	0.65	0.65	1.31	3.9	0.005	0.67	0.0	0.04	13.01	0.00	2.509	4.46	5.90	6.2	93.8	0.0	0.17	0.52	0.68	0.71	1.53	19222	3172	8	0	0	0	0	logfile
✔	8S5H	19735	2024-09-27	2024-02-23	3.7	4.00	3.77	3.8	0.004	0.66	0.0	0.04	14.76	0.01	2.035	6.20	0.00	1.6	98.2	0.2	0.92	0.74	0.74	0.97	3.8	0.004	0.61	0.0	0.04	15.53	0.00	2.373	6.51	1.20	4.0	96.0	0.0	0.52	1.27	0.76	0.79	0.94	63840	4056	16	0	8	0	31936	logfile
✔	8S5i	19736	2024-09-23	2024-02-23	3.1	3.24	3.20	3.3	0.004	0.58	0.0	0.04	13.53	0.00	2.087	3.04	0.58	1.9	97.8	0.2	0.50	0.57	0.65	2.82	3.2	0.004	0.59	0.0	0.04	15.41	0.00	2.363	5.49	1.83	2.9	97.0	0.1	0.77	0.75	0.65	0.79	2.80	47880	3042	12	0	6	0	23952	logfile
✔	8S5K	19738	2024-09-27	2024-02-23	3.8	3.96	3.75	3.9	0.004	0.75	0.0	0.04	14.70	0.01	1.967	7.13	0.15	3.0	96.8	0.1	0.58	0.76	0.72	1.58	3.8	0.004	0.59	0.0	0.04	15.39	0.00	2.277	7.02	1.29	4.3	95.6	0.0	0.31	1.02	0.76	0.72	1.39	63840	4056	16	0	8	0	31936	logfile
✔	8YEo	39200	2024-09-30	2024-02-22	3.44	4.39	3.47	3.8	0.003	0.60	0.0	0.04	20.20	0.00	2.252	6.90	0.42	5.0	95.0	0.0	-0.97	0.92	0.85	2.26	3.8	0.003	0.61	0.0	0.04	20.07	0.00	2.473	7.75	2.39	5.1	94.9	0.0	-0.06	0.45	0.93	0.90	2.24	24197	2680	12	119	0	0	0	logfile
✔	8YE9	39191	2024-09-26	2024-02-22	3.43	3.69	3.54	3.7	0.007	1.01	0.0	0.06	15.50	0.01	2.195	3.79	0.24	7.9	92.1	0.0	-4.35	0.73	0.75	2.64	3.7	0.002	0.60	0.0	0.04	17.43	0.00	2.488	4.52	2.17	4.0	96.0	0.0	-0.33	1.30	0.73	0.74	1.81	13559	1448	3	90	0	0	0	logfile
✔	8YE6	39190	2024-09-26	2024-02-22	2.95	3.10	2.95	3.1	0.010	1.07	0.0	0.06	15.48	0.01	2.259	3.40	0.16	5.4	94.6	0.0	-4.09	0.71	0.80	4.13	3.1	0.002	0.59	0.0	0.04	18.02	0.00	2.286	5.08	2.16	2.5	97.5	0.0	0.48	0.68	0.72	0.81	2.89	13603	1447	3	92	0	0	0	logfile
✔	8W35	43762	2024-09-23	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.003	0.54	0.0	0.03	20.35	0.00	2.570	2.90	3.00	2.6	97.4	0.0	1.23	0.36	0.65	0.76	2.96	2611	234	3	34	0	0	0	logfile

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