Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8FMX	29299	2024-09-25	2022-12-26	3.37	4.30	3.60	3.9	0.005	0.93	0.0	0.06	14.52	0.01	2.404	0.43	0.00	2.6	97.4	0.0	-1.06	0.89	0.86	2.70	3.9	0.002	0.57	0.0	0.04	14.14	0.00	2.512	3.70	0.35	2.6	97.4	0.0	0.98	1.23	0.88	0.87	2.29	10329	1335	9	0	12	0	0	logfile
✔	6UZZ	20965	2024-09-27	2019-11-16	3.1	3.48	—	3.4	0.009	0.92	0.0	0.06	10.61	0.01	2.325	2.53	0.24	1.8	98.0	0.2	-4.22	0.60	0.81	3.12	3.4	0.004	0.55	0.0	0.04	14.96	0.00	2.360	3.04	1.63	2.5	97.5	0.0	2.56	0.59	0.67	0.86	2.15	15832	1984	12	0	8	0	0	logfile
✔	7RTN	24684	2024-09-23	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.003	0.60	0.0	0.04	16.66	0.00	2.556	5.59	3.42	5.0	95.0	0.0	1.29	0.35	0.31	0.79	2.97	6018	810	3	0	0	0	0	logfile
✔	7KSR	23024	2024-09-26	2020-11-24	4.1	4.28	—	4.2	0.004	0.70	0.0	0.05	11.74	0.00	2.200	1.91	0.00	5.5	94.5	0.0	-4.46	0.65	0.70	—	4.2	0.004	0.72	0.0	0.05	13.19	0.00	1.595	9.70	0.00	5.9	94.1	0.0	-1.33	1.11	0.70	0.78	—	11863	1524	5	0	7	0	0	logfile
✔	7oCY	12816	2024-09-24	2021-04-28	4.25	4.55	4.29	4.4	0.003	0.62	0.0	0.04	12.49	0.00	1.980	9.97	0.00	4.9	95.1	0.0	-0.08	0.73	0.77	—	4.4	0.003	0.67	0.0	0.04	12.70	0.00	2.407	8.40	0.00	2.8	97.2	0.0	0.94	1.14	0.74	0.78	—	7994	1243	3	0	0	0	0	logfile
✔	6o5B	0626	2024-09-26	2019-03-01	3.6	3.80	—	3.8	0.007	1.13	0.0	0.06	11.13	0.01	2.307	4.46	0.41	6.1	93.9	0.0	-4.21	0.63	0.79	2.85	3.7	0.003	0.69	0.0	0.04	15.30	0.00	2.204	6.49	3.44	5.1	94.9	0.0	-0.13	0.78	0.63	0.80	1.61	13169	1620	13	0	1	0	0	logfile
✔	7SJ1	25152	2024-09-24	2021-10-15	2.9	3.13	—	3.3	0.011	1.01	0.0	0.04	16.62	0.00	2.351	8.63	0.61	2.1	97.9	0.0	2.80	0.58	0.77	3.41	3.3	0.003	0.61	0.0	0.04	16.23	0.01	2.607	9.98	1.67	0.5	99.5	0.0	3.47	1.08	0.50	0.78	2.07	6463	784	9	0	34	1	0	logfile
✔	7Y6S	33646	2024-09-30	2022-06-21	3.1	4.17	3.22	3.3	0.005	0.76	0.0	0.06	19.82	0.00	2.147	9.28	0.31	4.3	95.5	0.1	-0.64	0.86	0.85	2.88	3.3	0.003	0.67	0.0	0.05	14.91	0.00	2.454	5.87	1.54	4.0	96.0	0.0	0.12	0.33	0.86	0.85	2.53	24852	3012	42	0	120	0	0	logfile
✔	7SL6	25192	2024-09-27	2021-10-22	3.7	3.77	—	3.5	0.003	0.55	0.0	0.04	13.38	0.00	2.201	10.19	0.25	6.5	93.3	0.2	-0.68	0.81	0.81	2.33	3.5	0.004	0.60	0.0	0.04	14.78	0.00	2.568	9.54	1.14	7.5	92.5	0.1	-0.70	1.15	0.81	0.83	2.40	14004	1734	6	0	0	0	0	logfile
✔	7NAo	24276	2024-09-26	2021-06-22	2.9	3.59	—	3.3	0.005	0.73	0.0	0.05	12.92	0.01	2.090	2.54	0.00	1.3	98.6	0.1	1.00	0.87	0.85	3.09	3.3	0.003	0.71	0.0	0.04	15.91	0.00	2.109	8.86	1.62	2.3	97.7	0.0	1.47	1.83	0.87	0.86	2.64	58083	7741	35	0	0	0	0	logfile
✔	7ZJE	14746	2024-09-28	2022-04-10	3.12	3.70	3.28	3.6	0.002	0.57	0.0	0.04	11.99	0.00	2.254	7.29	0.19	8.3	91.1	0.5	0.64	0.66	0.80	1.92	3.6	0.003	0.62	0.0	0.04	14.70	0.00	2.512	7.29	0.43	7.4	92.1	0.5	1.17	1.26	0.64	0.80	1.54	19284	2380	4	0	0	0	0	logfile
✔	7TLD	25988	2024-09-29	2022-01-18	2.89	3.35	—	3.3	0.013	1.80	0.0	0.09	13.31	0.01	2.524	0.07	0.94	5.2	94.6	0.2	-1.25	0.33	0.48	3.75	3.3	0.004	0.62	0.0	0.05	14.98	0.00	2.502	4.39	1.91	3.1	96.9	0.0	0.02	0.53	0.60	0.78	3.04	22812	2916	3	0	0	0	0	logfile
✔	6G8Z	4362	2024-09-27	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.028	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.003	0.57	0.0	0.04	13.96	0.00	2.402	4.48	1.58	3.2	96.8	0.0	2.43	1.96	0.69	0.85	2.58	15966	1908	6	0	0	0	0	logfile
✔	7F3E	31432	2024-09-28	2021-06-16	3.62	3.40	3.51	3.7	0.005	0.71	0.0	0.05	15.18	0.00	2.242	12.60	0.00	3.8	96.2	0.0	-0.41	0.63	0.67	2.23	3.6	0.003	0.62	0.0	0.04	17.65	0.00	2.368	10.23	2.74	2.5	97.5	0.0	-0.02	1.22	0.65	0.72	2.15	18564	2256	12	0	0	0	0	logfile
✔	8BYP	16330	2024-09-28	2022-12-15	3.12	3.39	3.21	3.3	0.004	0.64	0.0	0.05	14.53	0.00	2.198	9.76	0.40	6.2	93.8	0.0	-1.08	0.68	0.79	3.25	3.3	0.004	0.61	0.0	0.05	16.21	0.00	2.439	8.31	2.00	6.7	93.3	0.0	-0.56	1.10	0.70	0.82	3.03	19836	2421	2	0	0	0	0	logfile
✔	5Z1W	6877	2024-09-26	2017-12-28	3.38	3.50	—	3.5	0.011	0.93	0.0	0.06	10.30	0.01	2.016	10.61	0.00	4.7	95.3	0.0	-3.34	0.65	0.84	4.86	3.5	0.003	0.58	0.0	0.04	14.31	0.00	2.491	5.16	1.56	2.8	97.2	0.0	1.50	0.67	0.67	0.86	2.97	13824	1716	8	0	12	0	0	logfile
✔	7LRC	23494	2024-09-24	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	8.07	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.60	0.0	0.04	11.80	0.00	2.002	5.98	0.60	0.3	99.7	0.0	3.60	1.21	0.76	0.85	2.95	6202	762	6	0	6	0	0	logfile
✔	7LiC	23372	2024-09-26	2021-01-26	3.3	4.38	—	4.2	0.004	0.81	0.0	0.04	15.15	0.01	2.261	5.27	0.90	1.4	98.6	0.0	-0.82	0.72	0.79	1.06	4.2	0.003	0.72	0.0	0.04	16.90	0.00	2.409	9.18	2.61	1.6	98.4	0.0	3.39	1.32	0.68	0.77	0.60	11980	1508	4	0	0	0	0	logfile
✔	7LiG	23375	2024-09-26	2021-01-27	2.9	4.03	—	3.9	0.006	0.80	0.0	0.04	16.00	0.01	2.328	4.26	1.47	2.9	97.1	0.0	-1.68	0.73	0.80	1.89	3.9	0.003	0.64	0.0	0.04	17.56	0.00	2.509	7.76	0.74	1.9	98.1	0.0	2.55	1.24	0.59	0.72	2.54	12148	1524	8	0	4	0	0	logfile
✔	7K6Q	22692	2024-09-27	2020-09-21	3.1	3.63	3.21	3.5	0.006	0.78	0.0	0.04	24.80	0.01	2.108	3.36	0.00	2.3	97.7	0.0	1.37	0.81	0.80	3.65	3.5	0.004	0.56	0.0	0.03	25.90	0.00	2.545	7.71	1.11	3.0	97.0	0.0	2.14	1.10	0.82	0.83	2.63	15578	1229	13	292	1	0	0	logfile

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