Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7D4P	30575	2024-09-29	2020-09-24	2.7	3.03	2.86	3.0	0.007	0.80	0.0	0.04	13.90	0.00	2.036	4.62	0.67	1.2	98.8	0.0	2.42	0.58	0.76	3.11	3.0	0.004	0.52	0.0	0.04	16.07	0.00	2.405	3.84	1.47	1.7	98.3	0.0	2.63	0.54	0.60	0.79	2.81	22472	2676	8	0	28	0	0	logfile
✔	7DD6	30645	2024-09-26	2020-10-27	3.2	3.88	—	3.7	0.008	0.81	0.0	0.05	16.89	0.00	2.126	16.92	0.07	5.3	94.7	0.0	-3.07	0.70	0.77	2.12	3.7	0.003	0.67	0.0	0.05	16.32	0.00	2.352	7.58	2.75	2.9	97.1	0.0	-0.18	0.74	0.72	0.81	1.94	12678	1585	8	0	22	0	0	logfile
✔	7E7Q	31002	2024-09-27	2021-02-26	3.3	3.41	—	3.4	0.011	1.08	0.0	0.06	17.67	0.01	1.683	10.13	1.16	11.2	88.4	0.5	-2.87	0.71	0.85	3.04	3.4	0.003	0.66	0.0	0.04	15.95	0.00	1.981	4.23	1.68	7.1	92.9	0.0	-1.01	0.40	0.71	0.86	2.09	15279	1958	4	0	21	0	0	logfile
✘	7YG4	33807	2024-09-24	2022-07-11	3.1	3.38	3.15	3.3	0.003	0.58	0.0	0.04	15.98	0.00	2.147	7.09	0.00	3.3	96.7	0.0	0.41	0.75	0.81	1.84	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7510	953	3	0	0	0	0	logfile
✘	7WSQ	32764	2024-09-27	2022-02-01	3.8	3.52	—	3.9	0.038	1.52	0.0	0.45	14.72	0.01	1.827	11.77	0.00	4.9	95.1	0.0	-0.66	0.68	0.75	1.94	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16522	2104	10	0	10	0	0	logfile
✔	7o12	12687	2024-09-26	2021-03-28	3.7	4.45	—	3.9	0.012	1.29	0.0	0.07	15.58	0.01	1.734	8.32	0.82	5.6	94.4	0.0	-5.32	0.82	0.84	1.75	3.9	0.003	0.65	0.0	0.04	15.53	0.00	1.935	11.58	2.46	5.6	94.4	0.0	-0.13	1.53	0.82	0.85	1.04	11691	1511	8	0	5	1	0	logfile
✔	7PQQ	13596	2024-09-23	2021-09-18	3.3	3.44	—	3.5	0.004	0.69	0.0	0.04	14.02	0.00	2.244	12.20	0.00	4.6	95.4	0.0	-2.50	0.44	0.73	3.02	3.5	0.003	0.67	0.0	0.04	16.32	0.00	2.534	7.02	2.83	3.6	96.4	0.0	-1.45	0.51	0.44	0.75	2.41	3207	417	2	0	0	0	0	logfile
✔	7JGR	22329	2024-09-29	2020-07-19	3.9	4.26	3.87	3.9	0.006	0.95	0.0	0.05	17.95	0.01	1.799	5.63	0.36	4.1	95.9	0.0	-2.88	0.87	0.84	1.46	3.9	0.003	0.66	0.0	0.04	18.81	0.00	1.876	9.57	1.89	2.5	97.5	0.0	1.41	1.73	0.88	0.86	1.59	21717	2531	13	68	8	0	0	logfile
✔	6X9R	22108	2024-09-28	2020-06-03	3.1	3.17	3.07	3.1	0.025	1.72	0.0	0.10	11.45	0.01	2.228	0.93	0.44	3.3	96.4	0.3	0.53	0.77	0.86	3.97	3.1	0.002	0.60	0.0	0.04	13.32	0.00	2.363	4.07	1.76	4.3	95.7	0.0	0.60	0.67	0.75	0.88	3.19	19590	2358	33	0	87	0	0	logfile
✔	6JXR	9895	2024-09-24	2019-04-24	3.7	3.95	—	3.9	0.008	1.01	0.0	0.06	10.83	0.01	2.273	5.82	0.74	7.2	92.6	0.2	-3.45	0.69	0.78	2.74	3.9	0.004	0.73	0.0	0.04	15.79	0.00	2.491	9.95	4.25	6.4	93.6	0.0	-0.30	1.71	0.66	0.79	2.24	8437	1073	8	0	0	0	0	logfile
✔	8EPM	28530	2024-09-27	2022-10-06	3.1	3.22	3.12	3.2	0.004	0.55	0.0	0.04	18.04	0.00	2.203	7.74	0.55	5.8	94.1	0.1	-0.05	0.62	0.84	2.62	3.2	0.003	0.60	0.0	0.04	17.15	0.00	2.332	6.40	3.37	5.4	94.6	0.1	0.41	1.17	0.61	0.84	2.62	15458	1939	9	0	17	0	0	logfile
✔	7UHG	26514	2024-09-29	2022-03-26	3.0	3.13	—	3.1	0.004	0.58	0.0	0.05	16.29	0.00	2.167	7.48	0.09	4.4	95.5	0.1	-1.09	0.60	0.83	2.76	3.1	0.003	0.63	0.0	0.04	16.59	0.00	2.341	6.55	2.04	4.4	95.5	0.1	0.08	0.41	0.58	0.84	2.50	20414	2502	11	0	23	0	0	logfile
✔	7LTo	23517	2024-09-23	2021-02-19	3.2	3.37	—	3.3	0.003	0.71	0.0	0.05	15.41	0.00	2.232	11.24	3.25	9.1	90.9	0.0	-4.26	0.71	0.77	2.73	3.3	0.003	0.70	0.0	0.04	16.87	0.00	2.226	7.17	4.07	7.0	93.0	0.0	-0.61	1.16	0.71	0.79	2.23	4754	605	2	0	0	0	0	logfile
✔	6Q2o	20576	2024-09-27	2019-08-08	3.65	3.77	—	3.9	0.004	0.79	0.0	0.05	8.54	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.004	0.75	0.0	0.04	14.86	0.00	2.223	11.77	2.47	7.0	93.0	0.0	-1.66	2.07	0.68	0.65	0.67	15196	1900	8	0	20	0	0	logfile
✔	7V9U	31827	2024-09-25	2021-08-26	3.12	3.31	—	3.2	0.004	0.63	0.0	0.04	25.35	0.01	2.180	10.84	0.00	6.2	93.8	0.0	-1.53	0.75	0.78	3.58	3.2	0.003	0.59	0.0	0.04	25.30	0.00	2.503	8.10	1.99	4.7	95.3	0.0	-0.71	1.23	0.76	0.81	3.40	9354	618	8	209	0	0	0	logfile
✔	7M6N	23701	2024-09-27	2021-03-26	2.61	3.47	2.67	3.2	0.009	1.28	0.0	0.08	11.87	0.01	2.228	4.91	0.31	1.7	98.3	0.0	0.23	0.86	0.85	3.28	3.2	0.003	0.66	0.0	0.04	14.53	0.00	2.512	7.73	1.50	1.0	99.0	0.0	0.88	0.63	0.83	0.84	3.00	14700	1810	15	0	5	0	0	logfile
✔	7UB2	26434	2024-09-27	2022-03-14	3.4	3.54	3.54	3.5	0.003	0.56	0.0	0.04	21.08	0.00	2.134	4.67	0.60	0.5	99.5	0.0	0.65	0.59	0.85	1.32	3.5	0.003	0.56	0.0	0.04	21.07	0.00	2.473	3.33	3.65	2.6	97.4	0.0	0.62	0.39	0.67	0.89	1.09	17579	1910	12	98	0	0	0	logfile
✔	6MRT	9212	2024-09-24	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.002	0.46	0.0	0.03	15.40	0.00	2.540	2.66	1.26	0.4	99.6	0.0	5.65	3.07	0.72	0.86	1.72	26868	3420	12	0	0	0	0	logfile
✘	6PW6	20500	2024-09-27	2019-07-22	4.5	4.56	4.36	4.5	0.022	1.83	0.0	0.11	13.61	0.01	2.200	1.61	0.56	2.7	97.2	0.2	0.50	0.74	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15942	1842	45	0	108	0	0	logfile
✔	7LPN	23480	2024-09-28	2021-02-12	3.61	4.25	3.76	4.1	0.004	0.66	0.0	0.05	17.48	0.00	2.103	3.17	0.22	6.5	93.5	0.0	-0.80	0.81	0.82	2.63	4.1	0.004	0.64	0.0	0.04	13.36	0.00	2.475	5.74	2.31	6.7	93.3	0.0	-0.76	1.12	0.78	0.79	2.36	17787	2076	42	0	105	0	0	logfile

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