Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9EME	19818	2024-09-23	2024-03-08	2.92	3.09	2.69	3.1	0.015	2.12	0.0	0.12	14.21	0.01	2.019	0.00	0.00	0.0	100.0	0.0	-4.40	0.34	0.61	5.02	3.1	0.003	0.62	0.0	0.04	15.90	0.00	2.560	3.61	1.35	6.2	93.8	0.0	-3.04	1.18	0.49	0.82	5.35	4140	552	6	0	0	0	0	logfile
✔	8oRE	17121	2024-09-23	2023-04-13	2.5	2.67	2.44	2.7	0.011	2.09	7.0	0.14	10.93	0.01	2.570	0.00	0.00	8.0	92.0	0.0	-2.10	0.32	0.74	5.29	2.7	0.003	0.65	0.0	0.05	17.80	0.00	2.515	1.38	1.49	6.7	93.3	0.0	-2.05	3.45	0.36	0.80	4.68	3615	231	3	0	0	0	1845	logfile
✔	8Ci8	16671	2024-09-23	2023-02-09	2.67	2.61	2.27	2.7	0.009	1.46	0.0	0.08	13.63	0.01	2.521	0.00	0.00	0.0	100.0	0.0	-4.96	0.64	0.83	3.28	2.7	0.004	0.63	0.0	0.04	16.74	0.00	2.608	9.06	6.93	1.1	98.9	0.0	-3.21	1.20	0.66	0.86	5.09	3430	485	25	0	0	0	0	logfile
✔	6WKT	21708	2024-09-23	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.002	0.53	0.0	0.03	15.20	0.00	2.587	7.85	0.00	3.8	96.2	0.0	4.44	1.35	0.63	0.74	3.44	3152	424	4	0	0	0	0	logfile
✔	8oT4	17168	2024-09-23	2023-04-20	2.97	3.23	2.90	3.5	0.012	2.30	0.0	0.13	15.19	0.01	2.527	0.00	0.00	0.0	100.0	0.0	-3.85	0.61	0.76	5.14	3.5	0.007	0.83	0.0	0.05	18.26	0.00	2.607	9.86	2.87	4.3	95.7	0.0	-2.73	1.34	0.61	0.80	4.38	3444	444	12	0	0	0	0	logfile
✔	8TTL	41610	2024-09-23	2023-08-14	2.6	2.56	2.61	2.8	0.013	2.14	8.0	0.13	13.17	0.01	2.584	0.00	1.35	7.1	92.0	0.9	-3.09	0.42	0.79	4.83	2.8	0.002	0.62	0.0	0.05	16.14	0.01	2.514	2.51	2.02	4.4	95.6	0.0	-2.30	1.51	0.37	0.87	5.35	5190	351	6	0	0	0	2607	logfile
✔	9CGZ	45589	2024-09-24	2024-07-01	2.69	2.42	2.56	2.8	0.011	1.91	0.0	0.09	12.93	0.01	2.545	0.00	0.26	6.8	92.0	1.2	-2.13	0.26	0.62	4.31	2.8	0.003	0.63	0.0	0.05	17.08	0.00	2.562	5.13	1.30	7.5	92.5	0.0	-2.35	0.95	0.38	0.79	5.07	6822	438	6	0	0	0	3480	logfile
✔	8UP1	42442	2024-09-24	2023-10-20	4.55	3.74	4.59	4.7	0.009	1.48	0.0	0.06	6.87	0.01	2.606	0.00	0.00	1.5	98.5	0.0	0.31	0.79	0.80	—	4.7	0.005	0.81	0.0	0.04	5.64	0.00	2.032	5.91	0.00	8.1	91.9	0.0	1.79	2.25	0.81	0.84	—	7088	1428	4	0	0	0	0	logfile
✔	9BBM	44422	2024-09-24	2024-04-06	3.2	3.01	3.08	3.2	0.012	2.05	4.0	0.11	13.73	0.01	2.513	0.00	0.51	12.7	82.4	4.9	-3.91	0.33	0.62	3.86	3.2	0.003	0.67	0.0	0.05	16.37	0.00	2.383	6.18	1.28	10.4	88.7	0.9	-3.22	1.30	0.35	0.73	4.15	6966	444	6	0	0	0	3558	logfile
✔	8YBK	39120	2024-09-25	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.59	0.0	0.03	27.89	0.00	2.536	4.53	1.55	1.6	98.4	0.0	2.73	1.11	0.79	0.84	2.83	10261	708	10	228	0	0	0	logfile
✔	8oT3	17167	2024-09-23	2023-04-20	2.73	3.21	2.60	3.2	0.014	2.33	0.0	0.13	16.88	0.01	2.559	0.00	0.00	0.0	100.0	0.0	-3.27	0.52	0.76	7.19	3.2	0.004	0.78	0.0	0.05	16.53	0.00	2.543	6.44	2.78	3.8	96.2	0.0	-3.36	1.85	0.42	0.79	7.31	2460	336	12	0	0	0	0	logfile
✔	8T18	40957	2024-09-30	2023-06-02	2.6	2.77	2.64	2.8	0.013	1.91	0.0	0.09	13.01	0.01	2.568	0.00	0.00	3.1	96.9	0.0	0.37	0.63	0.78	5.58	2.8	0.003	0.61	0.0	0.04	16.11	0.00	2.356	1.07	2.61	2.4	97.6	0.0	0.73	0.64	0.66	0.79	5.47	25356	1620	12	0	0	0	12420	logfile
✘	6UXB	20932	2024-09-25	2019-11-07	4.9	5.50	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.627	0.00	0.00	3.8	96.2	0.0	-2.56	0.74	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✔	9CHP	45597	2024-09-28	2024-07-01	3.3	3.33	3.28	3.4	0.013	1.75	0.0	0.09	11.61	0.02	2.568	0.00	0.00	1.8	98.2	0.0	-0.91	0.53	0.78	3.14	3.4	0.004	0.56	0.0	0.04	15.49	0.00	2.433	1.73	1.18	4.9	95.1	0.0	2.07	1.28	0.52	0.78	2.96	19104	1172	4	0	0	0	9596	logfile
✘	6UXA	20931	2024-09-25	2019-11-07	4.5	5.05	—	6.0	0.005	0.77	0.0	0.06	4.56	0.00	2.628	0.00	0.00	3.8	96.2	0.0	-2.56	0.71	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10344	2104	8	0	0	0	0	logfile
✔	9CHR	45599	2024-09-28	2024-07-01	3.5	3.52	3.44	3.6	0.013	1.70	0.0	0.09	11.42	0.02	2.557	0.00	0.00	2.2	97.8	0.0	-0.87	0.50	0.76	3.88	3.6	0.004	0.57	0.0	0.04	14.75	0.00	2.403	2.99	0.98	4.8	95.2	0.0	2.04	0.90	0.51	0.77	2.67	19104	1172	4	0	0	0	9596	logfile
✔	8URE	42491	2024-09-24	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.8	0.004	0.53	0.0	0.03	4.26	0.00	2.616	0.83	0.00	3.0	97.0	0.0	0.95	0.65	0.81	0.82	—	8896	1792	8	0	0	0	0	logfile
✔	9CHS	45600	2024-09-28	2024-07-01	3.4	3.17	3.29	3.3	0.013	1.70	0.0	0.09	11.67	0.02	2.560	0.00	0.00	1.9	98.1	0.0	-0.93	0.52	0.79	3.56	3.3	0.003	0.51	0.0	0.04	14.62	0.00	2.362	2.99	1.37	2.9	97.1	0.0	2.62	1.73	0.50	0.79	2.42	19104	1172	4	0	0	0	9596	logfile
✔	9CGX	45588	2024-09-24	2024-07-01	2.97	2.72	2.90	3.0	0.011	2.03	0.0	0.09	13.19	0.01	2.510	0.00	2.82	4.9	92.4	2.8	-2.56	0.26	0.63	4.86	3.1	0.003	0.62	0.0	0.05	16.17	0.00	2.536	3.45	1.03	8.1	91.7	0.2	-2.75	1.36	0.36	0.77	5.04	6960	444	6	0	0	0	3540	logfile
✔	8KB5	37070	2024-09-26	2023-08-03	2.26133	2.35	2.23	2.3	0.007	0.98	0.0	0.05	28.08	0.01	2.377	0.00	0.00	0.7	99.3	0.0	2.15	0.79	0.85	3.73	2.3	0.005	0.61	0.0	0.04	28.30	0.00	2.530	3.62	2.07	0.8	99.2	0.0	2.76	0.23	0.78	0.85	3.64	11953	758	10	290	0	0	0	logfile

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