Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QFP	13946	2024-09-25	2021-12-06	3.7	4.43	3.74	4.1	0.007	1.11	4.0	0.08	15.77	0.01	2.167	19.15	4.14	12.5	86.9	0.6	-4.48	0.84	0.72	0.85	4.0	0.003	0.76	0.0	0.05	16.79	0.00	2.390	12.65	3.70	12.1	87.9	0.0	-2.86	0.74	0.85	0.76	0.33	9996	1233	1	0	0	0	0	logfile
✔	6Y1Z	10673	2024-09-27	2020-02-14	2.82	3.48	—	3.3	0.003	0.58	0.0	0.05	15.31	0.00	2.325	3.51	2.49	2.4	97.6	0.0	-1.37	0.66	0.79	2.66	3.3	0.003	0.58	0.0	0.04	13.76	0.00	2.532	4.17	1.99	2.5	97.5	0.0	1.22	0.51	0.59	0.73	2.47	16610	1930	25	0	35	0	0	logfile
✔	8HS2	34983	2024-09-23	2022-12-16	3.08	3.85	3.16	3.6	0.004	0.78	0.0	0.05	14.96	0.01	2.192	7.16	0.17	4.7	95.3	0.0	0.10	0.67	0.87	3.05	3.6	0.004	0.67	0.0	0.04	15.29	0.00	2.468	9.45	2.15	5.5	94.5	0.0	0.84	0.33	0.67	0.87	2.63	5456	716	3	0	0	0	0	logfile
✔	6B44	7048	2024-09-29	2017-09-25	2.9	3.00	—	3.0	0.006	0.99	0.0	0.06	16.39	0.01	2.237	5.38	0.43	11.4	88.6	0.0	-4.46	0.65	0.77	3.33	3.0	0.003	0.63	0.0	0.04	18.45	0.00	2.113	7.43	2.32	7.7	92.3	0.0	-1.68	0.99	0.66	0.79	2.55	22681	2879	12	114	0	0	0	logfile
✔	7CR1	30444	2024-09-24	2020-08-12	3.4	3.42	—	3.5	0.012	0.73	0.0	0.04	14.92	0.00	2.185	26.22	0.00	4.1	95.9	0.0	-2.00	0.59	0.82	3.14	3.5	0.003	0.60	0.0	0.04	16.56	0.00	2.655	6.71	2.75	2.1	97.9	0.0	2.75	1.15	0.60	0.82	1.40	8220	1000	8	0	4	0	0	logfile
✔	7XQG	33395	2024-09-25	2022-05-07	3.8	4.58	3.85	4.2	0.002	0.46	0.0	0.03	12.11	0.00	2.030	4.64	5.00	1.5	98.0	0.5	2.98	0.79	0.85	2.01	4.2	0.003	0.72	0.0	0.04	15.50	0.00	2.456	5.94	3.33	3.7	96.3	0.0	2.39	0.72	0.80	0.86	1.90	10206	1206	12	0	12	0	0	logfile
✔	8UR8	42487	2024-09-28	2023-10-25	2.97	3.69	3.09	3.5	0.006	0.64	0.0	0.05	13.53	0.00	2.241	4.99	0.00	2.7	97.3	0.0	-0.82	0.84	0.86	3.75	3.5	0.005	0.56	0.0	0.04	15.31	0.00	2.477	6.21	0.62	2.7	97.3	0.0	0.97	0.55	0.84	0.86	3.66	18752	2316	4	0	0	0	0	logfile
✔	7WYW	32896	2024-09-29	2022-02-16	3.8	3.91	—	3.8	0.011	1.45	0.0	0.07	20.11	0.01	1.861	10.73	10.30	8.7	90.7	0.6	-3.47	0.74	0.80	1.47	3.8	0.003	0.66	0.0	0.04	16.45	0.00	1.985	6.43	2.48	2.2	97.8	0.0	0.52	2.06	0.76	0.83	1.29	22606	2654	22	0	76	10	0	logfile
✔	3JAC	6343	2024-09-27	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.07	13.28	0.01	2.047	64.31	0.00	24.4	74.1	1.6	-5.24	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	8B1U	15805	2024-09-30	2022-09-12	3.8	3.92	3.70	3.8	0.002	0.51	0.0	0.04	12.36	0.00	2.172	5.81	1.51	1.1	98.9	0.0	-0.66	0.77	0.78	1.88	3.8	0.006	0.72	0.0	0.04	16.70	0.00	2.030	9.18	2.04	3.2	96.8	0.0	0.71	1.38	0.79	0.83	1.83	24127	2886	6	51	2	0	0	logfile
✔	6W6o	21560	2024-09-25	2020-03-17	3.2	3.40	—	3.4	0.011	1.34	0.0	0.06	24.62	0.00	2.078	53.37	16.39	15.2	83.3	1.6	-4.85	0.63	0.75	1.80	3.4	0.003	0.79	0.0	0.04	19.87	0.00	2.348	11.28	4.83	6.1	93.9	0.0	0.91	1.74	0.63	0.82	2.03	9180	1044	12	0	12	0	0	logfile
✔	8iXJ	35793	2024-09-26	2023-04-01	3.1	3.03	3.07	3.1	0.012	1.45	0.0	0.09	10.47	0.00	2.412	3.04	0.00	0.0	100.0	0.0	3.48	0.67	0.86	2.90	3.1	0.002	0.32	0.0	0.03	13.78	0.00	2.396	2.00	0.74	0.0	100.0	0.0	7.19	1.02	0.65	0.85	0.95	13760	1840	40	0	0	0	0	logfile
✔	7ZDV	14671	2024-09-24	2022-03-29	3.05	3.19	2.98	3.1	0.006	0.74	0.0	0.05	14.83	0.00	1.993	8.93	0.11	2.2	97.8	0.0	-2.81	0.73	0.88	2.95	3.1	0.003	0.59	0.0	0.04	15.34	0.00	2.029	6.36	1.53	1.6	98.4	0.0	1.54	0.92	0.69	0.88	1.93	8877	1141	3	0	2	0	0	logfile
✔	5K12	8194	2024-09-26	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.9	0.005	0.62	0.0	0.04	15.46	0.01	2.404	5.38	0.75	2.1	97.9	0.0	1.89	0.90	0.71	0.89	3.29	14856	1764	12	0	0	1086	0	logfile
✔	7W3X	32295	2024-09-24	2021-11-26	3.21	2.33	3.15	2.2	0.004	0.76	0.0	0.05	18.43	0.00	2.190	8.18	0.00	9.0	91.0	0.0	-2.95	0.77	0.79	3.38	2.1	0.003	0.74	1.0	0.05	16.06	0.00	2.453	10.35	1.49	8.7	91.3	0.0	-2.77	0.95	0.78	0.82	2.90	7429	893	7	0	31	0	0	logfile
✔	7CR0	30443	2024-09-24	2020-08-12	3.1	3.35	—	3.4	0.005	0.63	0.0	0.04	14.38	0.00	2.212	5.87	0.00	4.0	96.0	0.0	-4.99	0.58	0.82	3.75	3.4	0.003	0.61	0.0	0.04	15.68	0.00	2.490	6.12	3.33	3.2	96.8	0.0	2.56	0.50	0.58	0.82	2.84	8188	1004	4	0	0	0	0	logfile
✔	6VWX	21425	2024-09-24	2020-02-20	3.1	3.47	—	3.5	0.011	1.29	0.0	0.05	22.96	0.01	2.200	11.67	15.83	8.1	91.5	0.4	-4.41	0.63	0.83	1.16	3.5	0.004	0.71	0.0	0.04	19.31	0.00	2.433	7.76	7.16	6.4	93.6	0.0	0.74	0.59	0.65	0.85	2.09	7782	900	8	0	10	0	0	logfile
✔	6B48	7052	2024-09-29	2017-09-25	3.6	3.85	—	3.9	0.007	0.98	1.0	0.06	13.64	0.01	2.223	6.03	0.10	12.1	87.8	0.1	-4.93	0.73	0.79	2.55	3.9	0.005	0.83	2.0	0.04	15.93	0.00	2.061	10.19	1.86	6.9	93.1	0.0	-1.72	1.05	0.72	0.76	1.33	22333	2976	11	60	0	0	0	logfile
✔	6NPY	0476	2024-09-24	2019-01-18	3.8	4.03	—	3.8	0.006	1.16	0.0	0.06	16.44	0.01	2.244	8.58	0.84	14.6	85.3	0.1	-4.90	0.79	0.71	0.51	3.8	0.003	0.86	0.0	0.05	17.51	0.00	2.497	15.37	2.88	10.4	89.6	0.0	-2.36	1.11	0.78	0.70	0.27	7586	965	3	0	1	0	0	logfile
✔	6NBi	0412	2024-09-25	2018-12-07	4.0	4.43	—	4.3	0.005	0.88	0.0	0.05	8.93	0.00	2.337	2.35	0.31	2.8	97.2	0.0	-1.70	0.62	0.74	—	4.3	0.004	0.87	0.0	0.04	15.73	0.00	2.431	14.76	3.50	2.3	97.7	0.0	0.05	2.53	0.64	0.77	—	9195	1141	7	0	3	0	0	logfile

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