Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZKP	14764	2024-09-29	2022-04-13	3.2	3.49	3.33	3.5	0.004	0.73	1.0	0.04	15.30	0.00	2.119	11.26	0.09	4.3	95.5	0.2	0.98	0.63	0.71	1.48	3.5	0.004	0.62	0.0	0.04	16.73	0.00	2.401	7.60	2.67	4.4	95.4	0.1	1.73	0.92	0.68	0.83	1.57	19929	2451	19	0	6	0	0	logfile
✔	8G6o	29776	2024-09-26	2023-02-15	3.1	2.98	3.00	3.1	0.004	0.69	0.0	0.04	17.30	0.00	2.107	3.87	0.00	2.4	97.6	0.0	1.88	0.47	0.78	2.94	3.1	0.002	0.48	0.0	0.04	17.68	0.00	2.179	3.65	0.70	2.7	97.3	0.0	2.60	0.30	0.47	0.80	2.72	13132	845	5	0	0	0	6522	logfile
✔	8AVB	15677	2024-09-27	2022-08-26	4.43	5.51	4.88	4.3	0.005	0.81	1.0	0.05	11.64	0.01	2.142	17.52	0.00	4.4	95.4	0.2	-0.47	0.81	0.63	—	4.2	0.003	0.67	0.0	0.05	12.56	0.01	2.338	20.46	0.00	6.2	93.7	0.1	-1.09	1.63	0.81	0.67	—	10591	1326	3	0	0	0	0	logfile
✔	8F0A	28754	2024-09-28	2022-11-02	2.6	3.77	2.61	3.4	0.031	1.77	0.0	0.13	9.86	0.01	2.388	0.56	0.00	0.8	99.2	0.0	0.72	0.68	0.66	4.15	3.4	0.003	0.71	0.0	0.05	14.01	0.00	2.317	5.56	0.53	1.0	99.0	0.0	1.19	1.39	0.72	0.77	3.69	18060	1212	9	0	0	0	9189	logfile
✔	7TKM	25974	2024-09-28	2022-01-17	4.5	7.58	4.88	4.3	0.019	2.22	0.0	0.00	6.78	0.01	2.385	0.12	0.00	4.3	94.2	1.5	-0.44	0.59	0.59	—	4.3	0.003	0.78	0.0	0.00	5.11	0.00	2.272	2.00	0.00	7.9	91.8	0.3	0.14	1.51	0.82	0.82	—	20227	5056	27	0	0	0	0	logfile
✔	8G6M	29774	2024-09-29	2023-02-15	3.1	3.00	3.09	3.0	0.004	0.71	0.0	0.04	13.63	0.01	2.143	2.33	0.43	1.9	98.1	0.0	0.86	0.54	0.74	2.43	3.0	0.003	0.79	0.0	0.04	15.31	0.00	2.406	4.01	1.03	2.1	97.9	0.0	1.75	0.64	0.56	0.80	2.17	21438	1379	7	0	0	0	10657	logfile
✔	7SB2	24961	2024-09-23	2021-09-23	3.4	3.66	3.14	3.3	0.007	0.79	0.0	0.04	14.92	0.00	2.178	23.65	0.00	8.4	91.4	0.2	-0.29	0.83	0.84	1.22	3.3	0.003	0.73	0.0	0.04	16.60	0.00	2.400	13.33	0.99	4.9	95.1	0.0	0.77	0.50	0.82	0.85	0.58	4715	598	2	0	0	0	0	logfile
✔	6M49	30074	2024-09-23	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.05	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.84	0.0	0.04	16.48	0.00	2.595	7.15	4.26	2.0	98.0	0.0	2.12	3.42	0.47	0.72	1.33	3098	420	3	0	1	0	0	logfile
✔	6RWX	10045	2024-09-28	2019-06-06	3.55	3.70	3.34	3.6	0.009	0.89	0.0	0.06	9.10	0.01	2.033	3.33	0.00	8.3	91.7	0.0	-2.76	0.81	0.86	3.14	3.6	0.004	0.62	0.0	0.04	16.03	0.00	2.341	5.60	2.68	5.8	94.2	0.0	0.60	2.06	0.76	0.87	2.33	70968	8784	48	0	0	0	0	logfile
✔	8oHS	16884	2024-09-26	2023-03-21	4.1	4.12	3.94	4.0	0.009	1.09	0.0	0.08	14.89	0.00	0.697	2.69	0.41	4.5	95.5	0.0	-1.04	0.47	0.78	—	4.0	0.004	0.70	0.0	0.04	13.60	0.00	2.181	6.08	0.07	1.9	98.1	0.0	1.11	2.07	0.51	0.87	—	13335	1758	9	0	0	0	0	logfile
✔	7TK8	25960	2024-09-28	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.62	—	4.4	0.007	1.07	0.0	0.00	6.23	0.01	2.196	7.82	0.00	10.0	89.7	0.3	-0.44	1.54	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7X93	33065	2024-09-26	2022-03-15	3.3	4.15	3.28	3.9	0.003	0.54	0.0	0.07	15.00	0.00	1.890	6.39	0.00	5.6	94.3	0.1	-0.89	0.81	0.82	2.89	3.9	0.002	0.55	0.0	0.06	14.49	0.00	2.294	4.60	0.43	5.4	94.5	0.1	-0.95	0.36	0.80	0.82	3.23	12742	828	8	0	8	0	6162	logfile
✔	7YAJ	33714	2024-09-24	2022-06-28	3.16	3.97	3.22	3.6	0.005	0.95	0.0	0.05	18.80	0.01	2.150	9.01	1.66	2.6	97.4	0.0	-1.00	0.60	0.66	0.66	3.7	0.003	0.80	0.0	0.04	18.37	0.00	2.154	12.77	4.03	2.1	97.9	0.0	0.26	0.86	0.61	0.73	0.87	7649	997	3	0	2	0	0	logfile
✔	7DUR	30867	2024-09-25	2021-01-11	3.3	4.35	—	3.8	0.008	1.09	0.0	0.07	15.69	0.01	2.048	13.63	4.61	4.0	96.0	0.0	-2.47	0.63	0.67	0.58	3.8	0.003	0.80	0.0	0.05	16.70	0.00	2.564	15.48	3.69	3.8	96.2	0.0	0.26	1.46	0.64	0.74	0.76	9211	1126	6	0	7	0	0	logfile
✔	6XWR	10636	2024-09-25	2020-01-24	3.22	3.96	—	3.7	0.008	0.75	0.0	0.05	12.81	0.00	2.122	11.13	0.00	5.7	94.3	0.0	-2.71	0.74	0.85	2.44	3.7	0.004	0.99	1.0	0.05	14.04	0.00	1.867	11.94	0.70	2.7	97.3	0.0	1.12	1.14	0.70	0.83	1.33	9564	1278	3	0	0	0	0	logfile
✔	7RU6	24698	2024-09-23	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.003	0.53	0.0	0.03	12.87	0.00	2.486	7.00	0.00	1.3	98.7	0.0	3.51	0.77	0.74	0.71	—	5426	331	2	0	0	0	2725	logfile
✔	7ADZ	11734	2024-09-28	2020-09-17	2.5	2.56	—	2.5	0.015	1.54	0.0	0.09	11.19	0.01	1.343	4.44	0.08	2.0	98.0	0.0	-0.11	0.64	0.85	4.72	2.5	0.003	0.73	3.0	0.05	16.24	0.00	2.084	2.67	2.07	2.6	97.4	0.0	0.53	0.65	0.66	0.88	4.13	67794	8508	30	0	0	0	0	logfile
✔	7M4R	23665	2024-09-24	2021-03-22	3.65	4.49	—	4.2	0.007	0.83	0.0	0.05	14.71	0.01	2.259	9.04	0.00	14.2	85.6	0.2	-2.94	0.74	0.66	1.90	4.2	0.004	0.72	0.0	0.04	15.82	0.00	2.514	5.37	1.28	11.0	89.0	0.0	-1.37	0.57	0.87	0.85	1.44	5092	639	3	0	0	0	0	logfile
✔	6QZF	4685	2024-09-28	2019-03-11	3.8	4.25	—	4.1	0.010	1.06	0.0	0.06	10.18	0.01	2.143	10.27	0.16	9.8	90.1	0.0	-4.87	0.67	0.72	0.54	4.1	0.004	0.89	0.0	0.05	17.11	0.00	2.377	21.51	4.39	7.8	92.2	0.0	-1.84	1.71	0.66	0.72	-0.02	71628	8880	60	0	0	0	0	logfile
✔	8iZY	35877	2024-09-27	2023-04-09	2.5	2.54	2.78	2.6	0.006	0.65	0.0	0.03	18.00	0.00	1.956	7.21	0.71	3.2	96.8	0.0	2.64	0.48	0.78	2.29	2.6	0.003	0.52	0.0	0.03	18.00	0.00	2.423	4.41	1.78	2.9	97.1	0.0	2.77	1.49	0.51	0.80	2.16	16776	1004	8	0	8	0	8360	logfile

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