Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J94	6204	2024-09-29	2014-12-05	4.2	2.69	—	3.1	0.009	1.97	0.0	0.07	17.14	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.003	0.80	0.0	0.04	14.91	0.01	1.999	14.79	0.05	5.0	94.5	0.6	0.47	2.63	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✔	3J9C	6224	2024-09-29	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	7.02	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.005	0.62	0.0	0.05	16.40	0.00	2.125	6.44	3.92	3.1	96.9	0.0	-0.06	1.43	0.76	0.87	3.17	23296	2961	14	0	14	0	0	logfile
✔	3J9D	6239	2024-09-23	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.66	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.84	0.0	0.04	17.95	0.00	2.320	14.54	6.01	7.4	92.2	0.4	-1.66	2.35	0.75	0.84	2.63	6086	746	2	0	1	0	0	logfile
✔	3J9E	6240	2024-09-23	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.003	0.74	0.0	0.04	17.95	0.00	2.522	8.15	3.89	7.6	91.5	1.0	0.82	1.24	0.74	0.85	2.95	4098	520	1	0	0	0	0	logfile
✔	3J9J	5778	2024-09-28	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.67	0.0	0.04	15.63	0.00	2.232	10.68	1.65	6.9	92.8	0.3	2.16	2.47	0.59	0.76	2.07	21068	1260	4	0	0	0	10624	logfile
✔	3J9P	6267	2024-09-27	2015-02-14	4.24	2.59	—	4.1	0.009	1.85	4.0	0.07	17.68	0.01	2.113	26.35	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.1	0.004	1.00	0.0	0.05	13.90	0.00	2.355	16.44	0.00	8.6	90.7	0.7	-1.91	1.18	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✘	3J9S	6272	2024-09-25	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9813	1191	6	0	15	315	0	logfile
✔	3J9X	6310	2024-09-27	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	14.92	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.45	3.8	0.004	0.78	0.0	0.04	17.29	0.01	2.258	17.58	1.79	2.4	97.6	0.0	1.69	1.17	0.63	0.79	2.00	70702	7424	60	696	0	0	0	logfile
✔	3JAC	6343	2024-09-27	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.07	13.28	0.01	2.047	64.31	0.00	24.4	74.1	1.6	-5.24	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	3JAD	6344	2024-09-26	2015-06-08	3.9	2.16	—	3.8	0.008	1.33	0.0	0.06	10.08	0.00	2.250	16.87	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	3.0	0.003	0.78	0.0	0.04	12.57	0.00	2.472	12.79	2.16	3.8	96.2	0.0	0.82	0.71	0.70	0.77	0.16	12705	1685	15	0	15	0	0	logfile
✔	3JAE	6345	2024-09-26	2015-06-08	3.9	2.88	—	3.5	0.006	1.26	0.0	0.05	9.72	0.01	2.038	13.69	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.89	0.0	0.05	13.97	0.00	2.548	12.28	1.22	2.6	97.4	0.0	0.32	0.85	0.72	0.82	1.74	12825	1690	10	0	10	0	0	logfile
✔	3JAF	6346	2024-09-26	2015-06-08	3.8	2.26	—	3.8	0.006	1.34	0.0	0.06	18.83	0.01	2.134	18.84	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.004	0.90	0.0	0.04	13.62	0.00	2.367	15.73	1.62	3.0	97.0	0.0	0.51	1.37	0.72	0.81	1.40	13865	1710	15	0	15	0	0	logfile
✔	3JAM	3047	2024-09-29	2015-06-17	3.46	3.54	3.52	3.5	0.007	1.32	63.0	0.10	25.28	0.01	1.398	7.14	13.45	10.2	86.0	3.8	-1.98	0.64	0.83	1.53	3.5	0.003	0.71	0.0	0.04	23.82	0.01	1.880	9.59	5.49	8.9	90.1	1.0	-0.86	0.69	0.67	0.86	1.52	77850	5056	42	1780	83	0	0	logfile
✔	3JB6	6408	2024-09-26	2015-08-02	3.3	3.35	—	3.4	0.010	0.90	4.0	0.06	9.55	0.01	2.123	8.29	0.20	2.4	97.4	0.1	-3.72	0.63	0.90	5.02	3.4	0.002	0.59	0.0	0.04	15.13	0.00	2.422	4.67	1.93	2.1	97.9	0.0	0.73	1.18	0.62	0.88	3.66	13904	1731	6	0	2	0	0	logfile
✔	3JB7	6404	2024-09-27	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	11.60	0.00	0.793	10.58	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.67	0.0	0.04	15.90	0.00	2.468	8.41	3.05	2.9	97.0	0.1	0.46	0.82	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✔	3JBR	6475	2024-09-27	2015-09-29	4.2	4.39	—	4.2	0.009	1.31	0.0	0.06	11.09	0.00	1.419	19.19	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.003	0.73	0.0	0.04	10.65	0.00	2.292	9.54	0.09	10.0	88.3	1.8	-0.34	2.04	0.65	0.69	—	16467	2148	8	0	385	0	0	logfile
✔	3JBS	6478	2024-09-23	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.64	0.0	0.04	18.35	0.00	2.655	5.51	3.95	1.7	98.3	0.0	0.93	1.82	0.21	0.81	3.78	1401	175	1	0	0	0	0	logfile
✔	3JBT	6480	2024-09-28	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.73	0.01	1.894	70.66	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.004	0.85	0.0	0.04	17.35	0.00	1.839	14.24	2.84	7.6	91.8	0.6	-1.57	1.78	0.70	0.69	0.68	70252	8736	28	0	21	0	0	logfile
✔	3JC2	3245	2024-09-23	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.91	0.0	0.05	17.36	0.01	2.543	13.06	2.68	7.2	92.1	0.6	-1.72	2.35	0.24	0.54	1.76	3911	482	4	0	32	0	0	logfile
✔	3JC6	6534	2024-09-29	2015-11-24	3.7	4.01	—	3.9	0.009	1.54	0.0	0.06	12.91	0.01	1.203	39.73	0.87	9.8	89.0	1.1	-3.87	0.79	0.76	1.43	3.9	0.004	1.03	0.0	0.05	16.96	0.01	2.438	19.90	4.79	9.8	89.4	0.8	-1.64	1.54	0.82	0.78	1.22	23732	2953	12	0	1	0	0	logfile

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