Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QPi	4614	2024-09-23	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.43	0.0	0.04	4.24	0.00	2.636	0.89	0.00	2.6	97.4	0.0	2.50	0.60	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	8X84	38135	2024-09-30	2023-11-27	3.1	2.99	3.18	3.2	0.004	0.53	0.0	0.03	14.45	0.00	1.976	4.19	0.30	0.8	99.2	0.0	3.21	0.57	0.78	3.16	3.2	0.002	0.44	0.0	0.03	15.25	0.00	2.485	3.62	0.91	1.1	98.9	0.0	3.63	0.47	0.59	0.80	2.83	24534	1524	12	0	6	4	12444	logfile
✔	7P13	13154	2024-09-26	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	2.1	0.002	0.44	0.0	0.03	17.09	0.00	2.472	15.03	1.44	2.3	97.7	0.0	5.41	0.51	0.83	0.87	3.25	13727	1743	7	0	0	0	154	logfile
✔	8J9Z	36120	2024-09-26	2023-05-05	3.13	3.40	3.17	3.4	0.002	0.41	0.0	0.04	16.68	0.00	2.177	4.52	0.15	2.2	97.8	0.0	1.31	0.68	0.81	3.00	3.4	0.002	0.44	0.0	0.04	17.13	0.00	2.513	3.87	1.83	2.0	98.0	0.0	1.30	0.27	0.72	0.85	3.02	12154	1494	2	0	0	0	0	logfile
✔	7TFB	25868	2024-09-24	2022-01-06	2.28	2.41	—	2.5	0.005	0.60	0.0	0.05	16.67	0.00	1.926	6.95	2.11	5.1	94.9	0.1	-0.03	0.48	0.67	4.05	2.5	0.002	0.44	0.0	0.04	16.68	0.00	1.937	18.84	2.20	4.3	95.7	0.0	1.13	0.99	0.71	0.85	3.86	49630	6328	42	0	28	0	140	logfile
✔	8VDZ	43157	2024-09-29	2023-12-18	2.7	2.80	2.60	2.8	0.003	0.46	0.0	0.04	11.96	0.00	2.056	4.30	0.00	0.2	99.8	0.0	3.43	0.72	0.84	4.07	2.8	0.003	0.45	0.0	0.04	16.64	0.00	2.577	4.66	1.37	0.4	99.6	0.0	3.15	0.33	0.73	0.87	3.41	23700	3087	24	0	0	0	0	logfile
✔	7STM	25433	2024-09-30	2021-11-14	3.02	3.45	—	3.3	0.008	0.93	0.0	0.05	11.88	0.00	2.229	1.33	0.31	2.4	97.6	0.0	2.06	0.68	0.82	3.32	3.2	0.003	0.45	0.0	0.04	13.47	0.00	1.927	1.80	0.62	3.1	96.6	0.3	2.16	3.61	0.66	0.85	2.81	25040	1602	4	0	12	0	12100	logfile
✔	7ooA	13008	2024-09-27	2021-05-27	2.7	2.63	2.63	2.6	0.005	0.66	0.0	0.05	21.92	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.002	0.45	0.0	0.04	15.57	0.00	2.593	5.87	1.35	0.3	99.7	0.0	2.67	1.12	0.70	0.88	3.46	15610	1834	14	0	35	0	0	logfile
✔	7Z4J	14499	2024-09-26	2022-03-03	2.99	3.74	3.13	3.4	0.005	0.48	0.0	0.04	16.16	0.00	1.860	7.21	2.15	2.2	97.8	0.0	0.96	0.85	0.87	2.76	3.4	0.002	0.45	0.0	0.03	17.06	0.00	1.983	5.78	0.83	2.1	97.9	0.0	1.45	1.05	0.85	0.86	2.68	13948	1345	10	142	4	8	0	logfile
✔	8GGU	40021	2024-09-23	2023-03-08	3.4	3.47	3.35	3.6	0.004	0.55	0.0	0.04	13.54	0.00	2.284	4.08	0.00	1.1	98.9	0.0	1.90	0.46	0.76	1.61	3.6	0.002	0.45	0.0	0.04	15.32	0.00	2.655	1.53	3.87	0.0	100.0	0.0	2.61	0.30	0.46	0.76	1.00	2053	281	2	0	1	0	0	logfile
✔	8GEF	29968	2024-09-23	2023-03-06	3.8	4.05	3.84	4.0	0.014	0.96	0.0	0.04	13.65	0.00	2.302	7.38	1.42	1.2	98.8	0.0	2.13	0.71	0.80	2.52	4.0	0.002	0.45	0.0	0.04	13.52	0.00	2.608	5.25	2.36	1.2	98.8	0.0	2.37	1.09	0.71	0.79	2.15	6216	941	5	0	1	0	0	logfile
✔	8FA2	28948	2024-09-23	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.45	0.0	0.03	14.36	0.00	2.635	6.17	0.67	0.0	100.0	0.0	5.77	0.33	0.76	0.79	0.61	2577	342	6	0	0	0	0	logfile
✔	8PKD	17735	2024-09-23	2023-06-26	2.33	2.42	2.31	2.4	0.003	0.44	0.0	0.04	15.00	0.00	2.246	3.95	0.00	2.7	97.3	0.0	1.55	0.65	0.81	4.56	2.4	0.002	0.45	0.0	0.04	17.94	0.00	2.664	3.42	0.82	1.0	99.0	0.0	2.07	1.03	0.80	0.91	4.18	4844	600	8	0	0	16	0	logfile
✔	8FPG	29363	2024-09-25	2023-01-04	2.32	1.99	2.29	2.2	0.003	0.49	0.0	0.04	16.03	0.00	2.165	4.95	1.84	3.9	96.1	0.0	3.31	0.60	0.83	4.63	2.3	0.002	0.45	0.0	0.04	16.23	0.00	2.605	3.94	2.21	3.5	96.5	0.0	4.48	0.29	0.58	0.83	4.00	10674	1348	20	0	4	187	0	logfile
✔	7Xo0	33332	2024-09-23	2022-04-30	3.0	2.48	1.85	3.1	0.001	0.39	0.0	0.05	16.62	0.00	2.280	4.76	0.00	5.0	95.0	0.0	-2.66	0.47	0.87	7.11	3.1	0.003	0.45	0.0	0.05	17.20	0.00	2.581	3.43	2.71	6.9	93.1	0.0	-2.65	0.30	0.46	0.87	6.85	2550	372	6	0	0	0	0	logfile
✔	8A01	15044	2024-09-23	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	3.2	0.002	0.46	0.0	0.05	16.79	0.00	2.594	2.87	1.59	2.4	97.6	0.0	-0.19	0.24	0.47	0.87	2.60	5511	717	3	0	0	0	0	logfile
✔	8Y9B	39072	2024-09-26	2024-02-06	3.2	3.27	3.08	3.3	0.004	0.54	0.0	0.05	13.74	0.00	2.077	5.44	0.00	3.3	96.7	0.0	0.47	0.71	0.82	3.00	3.3	0.002	0.46	0.0	0.04	15.62	0.00	2.135	3.70	0.99	2.7	97.2	0.1	1.40	0.38	0.72	0.85	2.57	13380	1672	3	0	1	0	0	logfile
✔	8iXL	35795	2024-09-25	2023-04-01	3.5	3.61	3.45	3.6	0.012	1.48	0.0	0.10	11.65	0.00	2.568	2.07	0.00	0.4	99.6	0.0	2.40	0.71	0.84	1.08	3.6	0.003	0.46	0.0	0.04	15.97	0.00	2.582	5.21	2.81	0.5	99.5	0.0	5.61	1.12	0.68	0.84	1.00	10970	1455	35	0	0	0	0	logfile
✔	7SQV	25396	2024-09-23	2021-11-06	2.3	2.95	2.29	2.8	0.001	0.38	0.0	0.04	16.08	0.00	2.314	1.47	0.63	0.7	99.3	0.0	1.86	0.76	0.88	3.59	2.8	0.003	0.46	0.0	0.04	16.27	0.00	2.607	0.79	1.46	1.1	98.9	0.0	1.77	1.99	0.77	0.90	3.57	4471	573	5	0	0	7	0	logfile
✔	7YNR	33969	2024-09-23	2022-07-31	2.9	2.79	1.55	3.2	0.003	0.46	0.0	0.05	10.05	0.00	2.424	7.49	0.00	1.7	98.3	0.0	-3.30	0.41	0.87	6.76	3.2	0.002	0.46	0.0	0.05	12.90	0.00	2.622	3.65	0.00	4.0	96.0	0.0	-1.89	0.22	0.42	0.88	5.75	2526	366	6	0	0	0	0	logfile

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