Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HRK	34976	2024-09-24	2022-12-15	3.3	3.56	3.36	3.6	0.005	0.71	0.0	0.04	16.73	0.01	2.273	5.11	0.14	3.2	96.8	0.0	-1.80	0.67	0.74	1.69	3.6	0.002	0.56	0.0	0.04	17.45	0.00	2.571	2.80	2.31	3.2	96.8	0.0	-0.73	1.70	0.67	0.80	2.18	6412	791	2	0	0	0	0	logfile
✔	8CA1	16515	2024-09-25	2023-01-24	3.9	3.75	4.03	4.0	0.006	0.89	0.0	0.05	14.98	0.01	2.041	10.58	0.00	5.5	94.4	0.2	-1.92	0.78	0.81	2.21	4.0	0.002	0.64	0.0	0.04	15.91	0.00	2.494	8.43	1.49	2.0	98.0	0.0	2.40	1.98	0.77	0.80	1.93	9036	1178	4	0	2	0	0	logfile
✔	8R3Z	18878	2024-09-24	2023-11-10	3.4	4.16	3.41	3.9	0.004	0.65	0.0	0.05	17.44	0.00	1.932	14.50	0.29	3.5	96.5	0.0	-0.21	0.83	0.79	1.95	3.9	0.002	0.56	0.0	0.04	17.72	0.00	2.034	11.54	2.71	2.3	97.7	0.0	0.47	0.51	0.82	0.77	1.68	6389	755	3	6	1	0	0	logfile
✔	8iER	35391	2024-09-27	2023-02-15	4.87	5.08	4.32	4.9	0.002	0.53	0.0	0.04	12.91	0.00	1.978	6.35	0.00	7.4	92.3	0.3	-0.61	0.48	0.46	—	4.9	0.002	0.58	0.0	0.04	12.94	0.00	2.424	6.21	0.00	9.5	90.3	0.2	-0.89	1.27	0.52	0.55	—	15257	967	2	0	1	0	7758	logfile
✔	8HTi	35010	2024-09-24	2022-12-21	2.97	2.25	2.98	3.1	0.004	0.60	0.0	0.04	15.49	0.00	2.277	5.96	0.00	3.0	97.0	0.0	0.28	0.79	0.85	2.60	3.1	0.002	0.52	0.0	0.04	16.39	0.00	2.569	3.63	2.36	2.3	97.7	0.0	1.07	0.39	0.78	0.84	2.10	7390	962	6	0	1	0	0	logfile
✔	8UBG	42088	2024-09-29	2023-09-22	3.5	3.37	3.70	3.4	0.005	0.74	0.0	0.03	13.10	0.01	2.252	1.64	0.00	0.4	99.6	0.0	-2.55	0.48	0.72	1.79	3.4	0.002	0.47	0.0	0.03	16.13	0.00	2.179	4.67	0.89	1.5	98.5	0.0	5.86	0.86	0.49	0.72	1.19	72500	4520	20	0	0	0	37600	logfile
✔	7YFC	33785	2024-09-25	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	3.4	0.002	0.54	0.0	0.04	18.03	0.00	2.487	4.75	4.04	2.7	97.3	0.0	1.06	1.28	0.68	0.85	2.94	9882	1262	7	0	2	0	0	logfile
✔	8Qi7	18436	2024-09-27	2023-09-11	2.9	3.13	2.98	3.2	0.004	0.65	0.0	0.04	9.14	0.00	2.275	2.18	0.79	6.3	93.4	0.2	-3.83	0.69	0.88	5.75	3.2	0.002	0.60	0.0	0.04	13.56	0.00	2.613	2.28	0.33	2.1	97.9	0.0	0.74	0.95	0.70	0.87	3.88	14609	1848	8	0	0	117	0	logfile
✔	8oH2	16876	2024-09-23	2023-03-20	2.6	2.51	2.64	2.7	0.007	0.62	0.0	0.04	13.00	0.00	2.219	2.03	0.00	0.0	100.0	0.0	-3.19	0.48	0.86	6.37	2.6	0.002	0.53	0.0	0.05	17.80	0.00	2.248	1.22	2.31	0.0	100.0	0.0	-2.06	0.53	0.49	0.88	5.88	3702	468	102	0	72	30	0	logfile
✔	8SUB	40763	2024-09-26	2023-05-11	2.89	3.11	3.05	3.1	0.005	0.70	0.0	0.05	15.08	0.00	1.948	2.94	0.00	5.8	94.2	0.0	-1.48	0.71	0.84	3.31	3.2	0.002	0.55	0.0	0.04	17.01	0.00	1.989	2.83	1.20	3.8	96.2	0.0	-0.26	1.28	0.69	0.83	2.41	61226	7611	34	0	22	0	0	logfile
✔	8EKS	28212	2024-09-28	2022-09-21	3.1	3.47	3.18	3.5	0.003	0.62	0.0	0.04	13.55	0.00	2.215	3.64	0.00	1.9	98.1	0.0	-2.29	0.72	0.84	3.39	3.5	0.002	0.46	0.0	0.03	14.92	0.00	2.629	4.40	0.91	1.8	98.2	0.0	2.23	0.37	0.65	0.82	3.14	20484	2504	8	0	4	0	0	logfile
✔	8QCB	18328	2024-09-25	2023-08-25	2.8	2.99	2.84	3.0	0.002	0.45	0.0	0.04	12.78	0.00	2.288	3.19	0.00	2.5	97.5	0.0	1.02	0.61	0.76	3.54	3.0	0.002	0.50	0.0	0.04	15.52	0.00	2.484	3.42	1.97	2.2	97.8	0.0	1.23	0.90	0.75	0.88	2.83	11423	1506	5	0	0	0	0	logfile
✔	8F0o	28775	2024-09-30	2022-11-03	2.99	4.40	3.26	3.0	0.005	0.80	0.0	0.05	17.63	0.01	2.274	3.93	0.00	5.1	94.9	0.0	-2.73	0.81	0.83	1.70	3.0	0.002	0.71	0.0	0.04	15.86	0.00	2.410	8.41	0.74	4.3	95.7	0.0	0.29	0.52	0.81	0.84	1.48	24030	2968	16	0	38	0	0	logfile
✔	8C81	16468	2024-09-27	2023-01-18	3.3	3.77	3.41	3.7	0.004	0.61	0.0	0.05	16.33	0.00	2.225	3.97	0.00	3.7	96.3	0.0	0.64	0.67	0.82	2.60	3.7	0.002	0.53	0.0	0.04	15.49	0.00	2.467	3.11	0.94	3.6	96.4	0.0	1.01	0.28	0.74	0.87	1.84	15709	1938	8	0	6	0	0	logfile
✔	8TiB	41283	2024-09-23	2023-07-19	3.47	3.73	3.31	3.7	0.003	0.62	0.0	0.05	16.69	0.00	2.328	7.86	0.34	6.2	93.8	0.0	-1.60	0.32	0.87	1.51	3.7	0.002	0.50	0.0	0.04	16.81	0.00	2.482	6.03	4.42	4.9	94.8	0.3	-0.79	0.25	0.32	0.87	1.64	2667	393	3	0	0	0	0	logfile
✔	8W9V	37382	2024-09-24	2023-09-05	2.9	2.87	2.95	3.0	0.003	0.48	0.0	0.04	14.07	0.00	2.231	5.07	0.93	1.8	98.2	0.0	1.62	0.61	0.85	3.43	3.0	0.002	0.47	0.0	0.04	14.59	0.00	2.605	5.15	2.27	1.2	98.8	0.0	2.80	0.25	0.57	0.83	3.16	6574	852	4	0	6	0	0	logfile
✔	8RU0	19501	2024-09-26	2024-01-29	3.08	3.41	3.21	3.4	0.002	0.49	0.0	0.04	16.57	0.00	2.068	6.05	0.24	2.1	97.8	0.1	-0.20	0.64	0.83	2.63	3.4	0.002	0.55	0.0	0.04	16.27	0.00	2.026	4.89	2.41	2.6	97.3	0.1	0.61	1.31	0.64	0.83	2.24	11660	1476	8	0	11	0	0	logfile
✔	8FTK	29439	2024-09-24	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.002	0.54	0.0	0.04	4.64	0.00	2.329	1.93	0.00	8.3	91.7	0.0	0.47	1.25	0.86	0.82	—	7840	1584	1	0	0	0	0	logfile
✔	8UR3	42480	2024-09-25	2023-10-25	2.61	3.41	2.64	3.1	0.003	0.51	0.0	0.04	13.47	0.00	2.253	4.15	0.00	2.7	97.3	0.0	-0.63	0.86	0.85	3.65	3.1	0.002	0.49	0.0	0.04	15.10	0.00	2.499	5.77	0.87	2.8	97.2	0.0	1.07	0.54	0.87	0.86	3.24	9376	1158	2	0	0	0	0	logfile
✔	8K69	36919	2024-09-24	2023-07-25	2.33	2.41	2.31	2.4	0.007	0.94	0.0	0.06	17.64	0.01	2.040	9.84	5.85	2.9	96.9	0.2	0.30	0.57	0.77	5.61	2.4	0.002	0.55	0.0	0.04	15.82	0.00	2.289	3.96	1.78	2.9	97.1	0.0	2.61	1.12	0.74	0.89	5.36	7744	916	6	0	18	126	0	logfile

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