Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ooS	17027	2024-09-26	2023-04-05	3.29	1.76	3.20	3.1	0.007	1.29	0.0	0.05	24.79	0.01	1.879	4.57	0.00	3.2	96.8	0.0	-2.38	0.71	0.73	2.66	3.1	0.004	0.79	0.0	0.04	25.72	0.00	1.061	8.30	1.79	3.1	96.9	0.0	0.87	1.59	0.74	0.74	1.64	12307	966	10	217	3	0	0	logfile
✔	7To3	26028	2024-09-27	2022-01-22	2.74	3.49	2.83	3.3	0.002	0.54	0.0	0.04	12.12	0.00	2.062	3.20	0.00	1.9	98.1	0.0	0.85	0.83	0.85	3.77	3.3	0.003	0.59	0.0	0.04	14.25	0.00	1.083	3.34	0.58	2.1	97.9	0.0	1.10	1.33	0.82	0.85	3.75	14764	1850	6	0	10	0	0	logfile
✔	7TQD	26066	2024-09-25	2022-01-26	2.9	3.57	2.94	3.4	0.003	0.52	0.0	0.04	12.10	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.002	0.58	0.0	0.04	14.93	0.00	1.083	3.73	0.77	1.9	98.1	0.0	1.20	2.47	0.80	0.83	3.95	8690	1096	4	0	5	0	0	logfile
✔	7T76	25735	2024-09-27	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	12.89	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.004	0.75	0.0	0.05	11.88	0.00	1.085	11.16	0.00	5.2	94.8	0.0	-0.54	1.87	0.81	0.82	—	16587	1934	42	0	104	0	0	logfile
✔	7PT7	13620	2024-09-28	2021-09-26	3.8	3.34	—	3.4	0.007	0.74	4.0	0.05	14.97	0.00	1.865	11.56	0.64	3.3	96.7	0.0	0.56	0.76	0.80	1.56	3.4	0.003	0.57	0.0	0.04	16.00	0.00	1.085	8.29	1.33	2.8	97.2	0.0	0.84	0.31	0.77	0.82	1.32	67420	8451	29	0	50	0	0	logfile
✔	7N0C	24103	2024-09-24	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	16.67	0.01	2.180	6.79	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.006	1.00	0.0	0.04	17.18	0.00	1.087	10.53	3.07	5.0	95.0	0.0	-1.64	1.16	0.72	0.82	2.03	6088	644	6	49	7	1	0	logfile
✔	7BSS	30165	2024-09-25	2020-03-31	3.3	3.44	—	3.4	0.010	1.23	0.0	0.07	17.07	0.01	1.849	14.06	5.60	9.0	91.0	0.0	-5.79	0.62	0.86	3.74	3.4	0.003	0.66	0.0	0.04	16.80	0.00	1.089	7.60	3.44	5.2	94.8	0.0	-1.24	1.26	0.66	0.89	3.02	9289	1140	4	0	7	0	0	logfile
✔	7T22	25609	2024-09-30	2021-12-02	4.2	4.73	—	4.4	0.004	1.41	0.0	0.04	10.32	0.00	1.992	5.52	1.18	1.5	98.5	0.0	2.51	0.83	0.75	—	4.4	0.003	1.07	0.0	0.04	12.27	0.00	1.091	14.57	0.00	2.3	97.7	0.0	1.32	0.90	0.85	0.78	—	24536	3084	15	13	15	0	0	logfile
✔	7RPW	24624	2024-09-25	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.29	0.00	1.756	18.05	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.69	0.0	0.04	18.97	0.00	1.102	15.02	0.00	10.4	89.5	0.1	-2.97	3.75	0.77	0.68	—	10594	1179	10	62	5	0	0	logfile
✔	8TJV	41312	2024-09-25	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.008	0.70	0.0	0.04	23.56	0.01	1.106	11.00	0.00	0.0	0.0	0.0	—	0.91	0.92	0.92	—	8778	0	2	409	32	0	0	logfile
✔	7XT4	33439	2024-09-27	2022-05-16	3.08	2.22	2.99	2.0	0.006	0.91	1.0	0.06	19.00	0.01	2.244	4.64	3.70	5.0	94.8	0.2	-2.53	0.80	0.80	3.42	2.0	0.003	0.76	0.0	0.04	19.49	0.00	1.106	6.61	2.64	4.5	95.5	0.0	0.62	1.44	0.80	0.82	3.12	16850	1939	5	55	4	0	0	logfile
✔	6KPJ	0748	2024-09-27	2019-08-15	2.56	3.82	—	3.3	0.014	0.94	0.0	0.06	13.40	0.00	1.218	8.38	0.00	6.7	93.3	0.0	-4.33	0.85	0.86	3.83	3.3	0.005	0.77	1.0	0.13	14.45	0.00	1.108	3.53	1.09	4.5	95.5	0.0	0.49	0.67	0.85	0.87	3.49	62845	3936	24	0	48	0	31225	logfile
✔	8TZZ	41775	2024-09-26	2023-08-28	3.56	3.88	3.65	3.7	0.007	0.86	0.0	0.05	18.89	0.00	1.432	7.04	0.66	4.4	95.6	0.0	-0.59	0.81	0.85	2.60	3.7	0.003	0.55	0.0	0.04	18.92	0.00	1.110	7.15	0.66	3.9	96.1	0.0	0.52	0.42	0.81	0.84	1.88	14012	1336	11	144	5	5	0	logfile
✔	8HBH	34632	2024-09-24	2022-10-28	3.1	3.30	—	3.3	0.008	0.84	0.0	0.05	15.29	0.01	2.007	10.23	0.90	3.2	96.8	0.0	-0.10	0.68	0.78	2.79	3.3	0.003	0.60	0.0	0.04	15.66	0.00	1.115	7.45	2.81	2.1	97.9	0.0	0.94	0.30	0.72	0.81	2.53	8502	1099	4	0	5	0	0	logfile
✔	8EVU	28637	2024-09-26	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.10	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.004	0.57	0.0	0.04	13.49	0.00	1.117	3.62	0.72	2.2	97.8	0.0	1.36	0.42	0.76	0.91	3.95	11902	1540	9	0	5	0	0	logfile
✔	6B6H	7059	2024-09-29	2017-10-02	3.9	4.15	—	3.7	0.008	0.96	0.0	0.05	16.11	0.01	1.944	6.23	0.03	8.9	91.0	0.2	-4.47	0.71	0.48	1.58	3.8	0.004	0.67	0.0	0.04	17.45	0.00	1.124	8.45	0.86	9.0	90.9	0.0	-1.51	1.54	0.85	0.69	1.29	72070	4188	15	178	6	0	35400	logfile
✔	7N77	24222	2024-09-24	2021-06-09	3.2	4.05	3.31	3.7	0.006	1.31	0.0	0.06	13.19	0.01	1.692	9.63	0.14	3.5	96.5	0.0	-1.56	0.64	0.74	1.92	3.7	0.003	0.89	0.0	0.04	13.80	0.00	1.127	4.92	1.55	1.6	98.4	0.0	2.09	1.62	0.68	0.82	0.99	7470	1036	2	0	4	2	0	logfile
✔	6ZoJ	11320	2024-09-29	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	21.18	0.00	1.694	4.40	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.003	0.56	0.0	0.04	21.73	0.00	1.149	4.27	2.19	2.7	97.3	0.0	0.88	2.45	0.81	0.87	3.29	75783	4914	45	1704	169	0	0	logfile
✔	7ZC6	14622	2024-09-25	2022-03-25	4.27	4.35	4.17	4.3	0.014	1.95	12.0	2.55	19.30	0.01	2.098	12.11	10.79	6.1	93.1	0.8	-1.59	0.66	0.74	—	4.3	0.020	3.91	0.0	0.76	14.93	0.00	1.158	10.31	0.00	4.0	96.0	0.0	-0.92	0.72	0.68	0.77	—	11428	1513	11	0	12	0	0	logfile
✔	7LXT	23574	2024-09-24	2021-03-05	3.4	3.70	3.40	3.7	0.009	0.85	0.0	0.05	14.93	0.00	1.972	18.04	0.79	10.7	89.3	0.0	-2.90	0.75	0.82	2.36	3.7	0.005	0.69	0.0	0.05	16.77	0.00	1.168	10.99	2.99	8.1	91.9	0.0	-1.40	0.42	0.76	0.84	1.76	50536	6318	34	0	6	0	0	logfile

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