Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5M6S	3451	2024-09-23	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.63	0.0	0.03	17.89	0.00	2.491	5.65	0.00	6.2	93.8	0.0	2.23	2.29	0.02	0.07	—	1593	98	1	0	0	0	793	logfile
✔	5WVE	6690	2024-09-30	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.50	0.01	1.493	69.05	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.5	0.003	0.83	0.0	0.04	13.68	0.00	1.841	18.85	0.00	7.2	92.2	0.6	-1.71	2.03	0.79	0.59	—	78605	9766	39	0	21	0	0	logfile
✔	7DZY	30921	2024-09-28	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.89	0.0	0.00	5.59	0.00	2.061	1.34	0.00	12.1	87.8	0.1	-3.07	2.19	0.71	0.71	—	18708	4677	9	0	0	0	0	logfile
✔	7LVT	23542	2024-09-28	2021-02-26	4.6	4.32	—	4.0	0.008	1.36	3.0	0.09	13.04	0.01	2.057	6.40	0.96	6.4	93.3	0.3	-2.96	0.68	0.65	—	3.8	0.003	0.73	0.0	0.04	12.94	0.00	2.032	10.20	0.00	5.5	94.3	0.1	0.03	16.94	0.55	0.45	—	18944	2876	4	0	0	0	0	logfile
✔	7YG8	33811	2024-09-24	2022-07-11	2.97	3.59	3.04	3.0	0.002	0.48	0.0	0.03	24.52	0.00	2.042	13.48	0.00	0.0	0.0	0.0	—	0.89	0.82	—	3.0	0.007	0.69	0.0	0.04	24.59	0.00	1.821	17.34	0.00	0.0	0.0	0.0	—	0.40	0.91	0.90	—	8440	0	4	395	5	0	0	logfile
✔	6UM5	20817	2024-09-28	2019-10-09	4.2	4.70	—	4.3	0.010	1.57	27.0	0.12	17.84	0.02	2.022	7.30	4.06	6.0	92.8	1.2	-1.89	0.69	0.66	—	4.2	0.005	0.87	0.0	0.05	13.49	0.00	2.347	12.82	0.00	9.1	90.7	0.2	-1.91	0.94	0.81	0.83	—	20562	2487	36	0	96	0	0	logfile
✔	8CGG	16642	2024-09-23	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.002	0.67	0.0	0.04	16.97	0.00	2.666	1.75	0.00	3.1	96.9	0.0	-4.74	0.95	0.51	0.91	7.42	2710	400	5	0	0	0	0	logfile
✔	8FF3	29037	2024-09-23	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.002	0.51	0.0	0.06	11.60	0.00	2.568	4.58	0.00	0.7	99.3	0.0	-2.04	0.53	0.35	0.72	3.73	2190	150	6	0	0	0	1122	logfile
✔	7Z8L	14556	2024-09-27	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	9.68	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.004	0.63	0.0	0.04	6.87	0.00	1.809	2.27	0.00	5.1	94.9	0.0	1.52	0.68	0.81	0.84	—	16513	3311	3	0	5	0	0	logfile
✔	7TW1	26147	2024-09-29	2022-02-06	4.6	3.99	—	3.8	0.003	0.74	0.0	0.05	13.82	0.00	2.117	7.55	0.08	2.5	97.5	0.0	-0.20	0.75	0.78	—	3.7	0.003	0.63	0.0	0.04	14.06	0.00	2.347	8.77	0.00	3.4	96.6	0.0	0.04	1.17	0.75	0.79	—	23625	2993	4	0	0	0	0	logfile
✔	7B1B	11982	2024-09-26	2020-11-24	4.23	6.70	4.32	4.1	0.004	0.75	0.0	0.05	17.24	0.01	2.087	33.07	0.54	13.6	86.4	0.0	-2.84	0.88	0.83	—	4.2	0.005	0.80	0.0	0.05	12.51	0.00	2.423	23.68	0.00	11.5	88.5	0.1	-2.84	0.42	0.88	0.83	—	12870	1697	12	0	22	0	0	logfile
✔	7MLV	23911	2024-09-27	2021-04-29	4.1	4.82	—	3.9	0.005	1.02	0.0	0.06	15.50	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.004	0.81	0.0	0.05	12.36	0.00	2.518	17.06	0.00	8.6	91.4	0.0	-3.19	1.68	0.70	0.69	—	15055	1919	16	0	22	0	0	logfile
✔	7TW2	26148	2024-09-26	2022-02-06	4.8	4.73	—	3.9	0.003	0.75	0.0	0.04	13.67	0.01	2.177	9.73	0.07	2.2	97.8	0.0	-1.27	0.66	0.72	—	3.8	0.003	0.69	0.0	0.04	13.86	0.00	2.403	11.15	0.00	3.3	96.7	0.0	1.44	1.63	0.67	0.77	—	12838	1619	4	0	2	0	0	logfile
✔	7VHJ	31996	2024-09-30	2021-09-22	4.2	4.29	—	4.2	0.004	0.65	0.0	0.04	13.11	0.00	2.109	15.60	0.07	8.2	91.8	0.0	-3.85	0.76	0.79	—	4.2	0.004	0.66	0.0	0.04	13.44	0.00	2.394	11.52	0.00	6.6	93.4	0.0	-1.63	0.56	0.76	0.79	—	25353	3257	3	0	0	0	0	logfile
✔	6PWF	20507	2024-09-27	2019-07-22	4.07	4.13	—	4.1	0.009	1.01	0.0	0.06	26.98	0.01	2.066	6.15	0.11	9.8	90.2	0.0	-6.10	0.64	0.76	—	4.1	0.003	0.66	0.0	0.04	26.91	0.00	2.390	10.24	0.00	5.2	94.8	0.0	-2.55	1.15	0.64	0.75	—	15197	1208	11	292	0	0	0	logfile
✔	7L8G	23233	2024-09-27	2020-12-31	4.3	4.35	4.01	4.1	0.022	1.76	0.0	0.16	11.31	0.02	2.354	1.35	0.00	1.2	98.8	0.0	0.64	0.79	0.81	—	4.1	0.004	0.71	0.0	0.05	11.89	0.00	2.462	8.92	0.00	3.1	96.9	0.0	-0.09	1.71	0.79	0.82	—	15802	1695	39	0	307	0	0	logfile
✔	6UDA	20735	2024-09-29	2019-09-19	4.2	4.81	—	4.4	0.017	1.89	3.0	0.22	11.96	0.01	2.004	2.10	0.34	2.4	97.1	0.5	0.89	0.71	0.65	—	4.4	0.003	0.70	0.0	0.04	12.71	0.00	2.345	8.66	0.00	4.6	95.3	0.1	-0.30	0.82	0.85	0.83	—	23733	3024	18	0	18	0	0	logfile
✔	7Z8Q	14560	2024-09-29	2022-03-18	4.08	4.47	—	4.2	0.003	0.52	0.0	0.04	9.98	0.00	2.012	5.33	0.37	4.0	95.9	0.1	-0.46	0.78	0.70	—	4.2	0.006	0.79	0.0	0.05	12.71	0.01	1.973	12.25	0.00	5.5	94.5	0.0	-0.40	1.02	0.85	0.83	—	22485	2891	6	0	3	0	0	logfile
✔	6VQi	21351	2024-09-23	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.003	0.57	0.0	0.03	4.11	0.00	2.609	2.87	0.00	6.1	93.8	0.1	2.62	0.77	0.56	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	6DZV	8940	2024-09-24	2018-07-05	4.2	4.78	4.79	4.8	0.013	0.70	0.0	0.08	12.11	0.01	2.088	3.69	0.00	3.8	96.2	0.0	-4.08	0.49	0.64	—	4.8	0.003	0.72	0.0	0.04	12.53	0.00	2.531	10.91	0.00	4.7	95.3	0.0	-0.81	1.49	0.53	0.70	—	6121	765	5	0	4	0	0	logfile

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