Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P6A	13223	2024-09-23	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.006	0.74	0.0	0.06	14.08	0.00	2.571	4.76	0.64	4.7	95.3	0.0	-2.53	0.83	0.54	0.90	7.92	4166	540	10	0	0	76	0	logfile
✔	9iKC	60655	2024-09-26	2024-06-27	1.9	2.03	1.95	2.0	0.002	0.47	0.0	0.05	15.82	0.00	2.221	3.12	0.50	2.3	97.7	0.0	0.18	0.75	0.89	6.25	2.0	0.006	0.74	0.0	0.05	15.95	0.01	2.523	2.99	1.00	2.8	97.2	0.0	-0.22	1.14	0.75	0.89	6.57	12555	1587	6	0	0	150	0	logfile
✔	6ZGL	11210	2024-09-27	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.59	0.0	0.04	15.67	0.00	2.561	3.81	1.12	1.4	98.6	0.0	3.29	0.72	0.75	0.83	7.15	15760	1848	24	0	0	964	0	logfile
✘	8P6X	17510	2024-09-23	2023-05-30	1.9	1.85	1.92	1.9	0.005	0.63	0.0	0.04	16.39	0.00	2.211	7.57	0.72	2.3	97.6	0.2	1.71	0.68	0.78	5.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5284	631	7	0	2	144	0	logfile
✔	8P6Y	17511	2024-09-23	2023-05-30	1.9	1.73	1.95	1.9	0.005	0.60	0.0	0.04	17.03	0.00	2.148	3.62	0.36	1.0	98.9	0.2	1.99	0.68	0.84	6.33	1.9	0.004	0.68	0.0	0.04	17.01	0.01	2.160	4.01	1.08	1.3	98.5	0.2	1.72	0.75	0.68	0.85	6.30	5266	630	7	0	3	158	0	logfile
✔	7QEQ	13937	2024-09-28	2021-12-03	1.9	2.38	1.89	2.1	0.005	0.87	0.0	0.04	12.39	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.61	0.0	0.04	14.23	0.00	2.555	3.49	1.04	2.3	97.7	0.0	4.22	1.00	0.82	0.92	4.08	19313	2268	36	0	60	305	0	logfile
✔	8P6V	17508	2024-09-23	2023-05-30	1.9	1.76	1.97	1.9	0.005	0.62	0.0	0.04	16.30	0.00	2.221	5.67	1.26	1.8	98.1	0.2	1.53	0.64	0.77	5.52	1.9	0.005	0.69	0.0	0.05	16.84	0.01	2.544	6.75	2.35	1.6	98.2	0.2	1.00	0.77	0.65	0.78	5.32	5243	630	7	0	2	138	0	logfile
✔	8Q9F	18279	2024-09-24	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.63	0.0	0.05	14.58	0.00	2.484	2.35	0.56	2.5	97.5	0.0	-2.15	1.18	0.43	0.85	7.32	6390	414	6	0	0	0	3258	logfile
✔	8Q8C	18250	2024-09-24	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.002	0.52	0.0	0.05	15.47	0.00	2.540	0.60	0.54	1.7	98.3	0.0	-0.98	1.22	0.39	0.89	7.72	6618	429	6	0	0	0	3372	logfile
✔	7QK5	14038	2024-09-25	2021-12-17	1.92	1.67	1.83	2.2	0.011	1.89	4.0	0.10	10.96	0.01	2.401	0.10	0.00	4.5	95.5	0.0	-1.58	0.32	0.78	6.85	2.2	0.003	0.60	0.0	0.05	18.13	0.00	2.571	2.20	3.59	4.2	95.8	0.0	-1.89	1.63	0.36	0.82	7.01	10485	666	18	0	36	0	5337	logfile
✔	8CAN	16531	2024-09-28	2023-01-24	1.93	1.75	1.93	1.9	0.002	0.40	0.0	0.04	9.00	0.00	2.041	2.66	0.16	0.9	99.1	0.0	1.63	0.70	0.81	6.33	1.9	0.003	0.56	0.0	0.04	14.12	0.00	1.920	1.06	0.95	1.5	98.5	0.0	1.22	1.90	0.74	0.86	6.50	71225	4104	21	0	27	3170	33930	logfile
✔	7MBX	23749	2024-09-24	2021-04-01	1.95	2.56	1.94	2.4	0.005	0.88	1.0	0.06	12.16	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.003	0.61	0.0	0.04	15.12	0.00	2.476	4.87	1.12	0.9	99.1	0.0	1.91	0.50	0.71	0.88	4.65	8433	1065	13	0	2	61	0	logfile
✔	8XoN	38535	2024-09-23	2024-01-01	1.96	2.51	3.08	2.2	0.003	0.57	0.0	0.04	14.06	0.00	2.025	7.97	0.00	4.1	95.7	0.2	0.94	0.79	0.81	2.16	2.2	0.004	0.68	0.0	0.04	17.00	0.00	1.961	6.75	2.10	4.8	95.1	0.1	1.20	0.67	0.88	0.88	2.36	47409	6044	27	0	43	0	0	logfile
✔	7TFC	25869	2024-09-24	2022-01-06	1.96	2.13	—	2.1	0.002	0.53	0.0	0.04	17.59	0.00	1.913	6.13	1.74	4.1	95.9	0.0	0.82	0.43	0.60	5.65	2.1	0.002	0.53	0.0	0.04	17.35	0.00	1.875	14.80	1.50	4.3	95.7	0.0	0.65	0.99	0.73	0.83	6.28	50456	6356	42	0	28	0	140	logfile
✔	7MiJ	23853	2024-09-29	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	20.53	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.003	0.67	0.0	0.04	19.22	0.00	2.445	4.28	1.54	3.9	96.1	0.0	0.83	0.61	0.77	0.82	5.17	23010	2556	12	0	38	328	0	logfile
✔	8G17	29664	2024-09-25	2023-02-01	1.98	1.88	1.96	2.0	0.004	0.64	0.0	0.05	15.70	0.00	2.172	5.82	0.76	3.3	96.7	0.0	0.61	0.51	0.71	6.43	2.0	0.003	0.67	0.0	0.05	15.97	0.01	2.415	1.20	1.14	3.0	97.0	0.0	0.45	1.21	0.72	0.87	6.83	10016	1336	4	0	0	0	0	logfile
✔	9C4o	45192	2024-09-25	2024-06-04	1.99	2.17	2.04	2.2	0.004	0.65	0.0	0.04	16.53	0.00	2.208	5.77	0.18	1.7	98.3	0.0	-0.01	0.61	0.81	6.59	2.2	0.004	0.63	0.0	0.04	16.65	0.01	2.144	4.77	0.92	2.0	98.0	0.0	-0.02	0.86	0.61	0.81	6.74	10166	661	2	0	2	111	4883	logfile
✔	8oT6	17171	2024-09-23	2023-04-20	2.0	2.14	1.94	2.0	0.007	1.17	0.0	0.07	11.96	0.01	2.631	0.51	1.52	2.7	97.3	0.0	-2.61	0.47	0.93	7.98	1.9	0.003	0.60	0.0	0.05	16.11	0.00	2.567	2.56	0.61	1.4	98.6	0.0	-1.65	2.61	0.46	0.93	7.45	2870	375	5	0	0	0	0	logfile
✔	7QEY	13944	2024-09-25	2021-12-03	2.0	2.46	—	2.2	0.005	0.85	0.0	0.03	10.53	0.00	2.199	3.57	2.35	1.7	98.3	0.0	1.74	0.77	0.90	5.27	2.2	0.003	0.68	0.0	0.04	13.40	0.00	2.548	3.51	2.04	2.1	97.9	0.0	3.40	0.99	0.78	0.92	3.80	9467	1092	18	0	30	281	0	logfile
✔	8PPo	17806	2024-09-23	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.55	0.0	0.06	13.87	0.00	2.638	0.29	1.04	0.0	100.0	0.0	1.16	0.37	0.50	0.88	5.79	1696	240	16	0	0	0	0	logfile

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