Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TJQ	41308	2024-09-25	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.77	0.0	0.04	24.60	0.01	1.823	21.49	0.00	0.0	0.0	0.0	—	0.18	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	8EHG	28147	2024-09-25	2022-09-14	2.24	2.24	2.25	2.3	0.003	0.53	0.0	0.04	16.09	0.00	2.291	4.70	1.44	1.5	98.5	0.0	1.13	0.74	0.83	5.20	2.3	0.003	0.54	0.0	0.04	16.95	0.00	2.607	4.32	2.16	1.2	98.8	0.0	1.79	0.18	0.72	0.84	5.57	10472	1372	4	0	0	0	0	logfile
✔	8EPX	28534	2024-09-27	2022-10-06	3.15	3.30	3.06	3.2	0.004	0.58	0.0	0.04	24.05	0.00	1.297	7.63	4.99	5.1	94.9	0.0	-0.23	0.79	0.84	0.94	3.2	0.003	0.73	0.0	0.04	23.79	0.00	2.337	5.83	4.01	5.4	94.6	0.0	0.24	0.18	0.79	0.84	1.17	15457	1672	14	144	2	0	0	logfile
✔	8SMX	40605	2024-09-28	2023-04-26	3.2	3.37	3.21	3.3	0.003	0.57	0.0	0.04	26.38	0.00	1.330	4.49	0.00	1.9	98.1	0.0	1.43	0.74	0.85	2.99	3.3	0.004	0.58	0.0	0.04	26.66	0.00	2.150	4.02	0.93	2.2	97.8	0.0	1.50	0.18	0.73	0.87	2.81	13998	1000	13	294	2	0	0	logfile
✔	7UZU	26918	2024-09-24	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.003	0.50	0.0	0.04	17.61	0.00	2.409	2.73	0.78	3.8	96.2	0.0	2.45	0.19	0.59	0.87	5.46	7399	483	4	0	0	79	3655	logfile
✔	8Y86	39035	2024-09-24	2024-02-06	2.75	3.36	2.84	3.3	0.003	0.54	0.0	0.04	15.01	0.00	2.290	2.24	1.25	1.9	98.1	0.0	1.76	0.56	0.81	2.34	3.3	0.004	0.55	0.0	0.04	15.81	0.00	2.594	1.81	2.05	2.0	98.0	0.0	2.00	0.19	0.54	0.79	2.40	8060	1028	4	0	2	0	0	logfile
✔	7PX8	13691	2024-09-29	2021-10-08	3.27	3.27	—	3.2	0.002	0.52	0.0	0.04	12.52	0.01	2.236	3.53	0.05	2.2	97.8	0.0	-0.37	0.78	0.86	3.66	3.2	0.002	0.51	0.0	0.04	13.55	0.00	2.580	3.43	0.72	2.5	97.5	0.0	-0.01	0.19	0.80	0.88	3.34	21409	2798	4	0	0	0	0	logfile
✔	7RX5	24725	2024-09-24	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.33	0.0	0.03	12.76	0.00	2.676	2.72	0.00	0.0	100.0	0.0	5.55	0.19	0.70	0.87	2.91	9120	1160	40	0	0	0	0	logfile
✔	8G14	29661	2024-09-25	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.002	0.49	0.0	0.05	15.68	0.00	2.619	1.21	0.00	3.0	97.0	0.0	0.78	0.19	0.88	0.93	5.29	10020	1336	4	0	0	0	0	logfile
✔	8BXG	16318	2024-09-28	2022-12-08	3.16	3.34	3.18	3.3	0.003	0.54	0.0	0.03	19.91	0.00	2.245	4.29	0.12	7.4	92.6	0.0	1.42	0.66	0.81	1.88	3.3	0.003	0.55	0.0	0.03	19.08	0.00	2.226	3.55	1.61	7.1	92.9	0.0	1.26	0.19	0.66	0.81	1.98	17301	1093	4	0	6	0	8796	logfile
✔	8Ho9	34923	2024-09-26	2022-12-09	2.25	2.64	2.25	2.6	0.009	0.69	2.0	0.06	17.35	0.00	1.947	2.88	1.23	3.6	96.4	0.0	0.41	0.68	0.86	5.45	2.6	0.003	0.58	0.0	0.05	17.42	0.00	2.576	2.18	2.02	3.6	96.4	0.0	0.46	0.19	0.75	0.89	5.38	13463	1622	4	0	0	347	0	logfile
✔	8H2T	34443	2024-09-26	2022-10-07	2.59	3.14	2.68	3.0	0.003	0.59	0.0	0.04	16.32	0.00	2.043	5.51	1.52	3.0	96.9	0.1	0.43	0.76	0.86	4.68	3.0	0.003	0.58	0.0	0.04	16.56	0.00	2.067	4.27	0.86	3.7	96.1	0.2	0.79	0.19	0.75	0.85	4.12	14370	1776	9	0	9	0	0	logfile
✔	8QT9	18646	2024-09-23	2023-10-12	2.36	2.58	2.35	2.6	0.005	0.68	0.0	0.04	20.32	0.00	2.158	5.55	0.58	1.3	98.7	0.0	0.58	0.62	0.80	3.59	2.6	0.003	0.61	0.0	0.04	19.18	0.00	2.551	4.23	1.44	2.0	98.0	0.0	1.68	0.19	0.61	0.79	3.65	3511	399	2	0	4	64	0	logfile
✔	8iHQ	35452	2024-09-30	2023-02-23	2.71	2.92	2.80	3.0	0.004	0.59	0.0	0.05	16.58	0.01	2.095	4.22	0.62	1.6	98.4	0.0	-0.68	0.69	0.86	4.05	2.9	0.004	0.56	0.0	0.05	16.84	0.01	2.069	3.47	2.73	2.1	97.9	0.0	-0.12	0.20	0.73	0.88	3.98	24128	3192	16	0	16	0	0	logfile
✔	7T4N	25681	2024-09-24	2021-12-10	2.35	2.66	2.38	2.5	0.002	0.42	0.0	0.04	16.22	0.00	2.207	4.39	1.25	1.0	99.0	0.0	0.87	0.63	0.85	3.82	2.5	0.003	0.52	0.0	0.04	16.50	0.00	2.547	4.31	1.53	1.5	98.5	0.0	1.42	0.20	0.66	0.87	3.70	6476	803	2	0	0	0	0	logfile
✔	7ZQS	14874	2024-09-25	2022-05-02	2.54	3.28	2.59	3.0	0.004	0.57	0.0	0.04	18.00	0.00	2.257	5.71	0.00	2.4	97.6	0.0	1.32	0.88	0.91	5.01	3.0	0.004	0.54	0.0	0.04	18.36	0.00	2.152	5.21	0.00	2.0	98.0	0.0	1.78	0.20	0.86	0.90	4.17	11354	1278	12	60	14	0	0	logfile
✔	8SMZ	40607	2024-09-26	2023-04-26	3.2	3.42	3.24	3.4	0.004	0.57	0.0	0.04	26.57	0.00	1.330	5.43	0.00	2.8	97.2	0.0	1.15	0.73	0.84	3.11	3.4	0.004	0.56	0.0	0.04	26.73	0.00	2.180	4.41	0.58	2.4	97.6	0.0	1.64	0.20	0.70	0.84	2.64	13998	1000	13	294	2	0	0	logfile
✔	8iHR	35453	2024-09-30	2023-02-23	2.5	2.65	2.53	2.7	0.004	0.67	0.0	0.05	15.87	0.00	2.138	4.14	0.70	2.8	97.2	0.0	-0.52	0.74	0.89	4.49	2.7	0.003	0.60	0.0	0.05	16.25	0.00	2.020	3.69	1.77	2.2	97.8	0.0	-0.19	0.20	0.74	0.89	4.38	24224	3200	16	0	16	0	0	logfile
✔	8WTV	37843	2024-09-23	2023-10-19	2.7	2.75	2.65	2.8	0.004	0.54	0.0	0.04	15.81	0.01	2.297	1.86	0.22	2.3	97.7	0.0	1.82	0.66	0.88	2.95	2.8	0.003	0.50	0.0	0.04	16.06	0.00	2.282	1.05	1.77	2.4	97.6	0.0	1.97	0.20	0.71	0.90	2.81	4325	536	2	0	6	3	0	logfile
✔	7TYJ	26181	2024-09-24	2022-02-13	3.3	3.29	3.45	3.3	0.004	0.62	0.0	0.05	16.63	0.00	2.161	9.16	0.44	10.3	89.6	0.1	-1.90	0.67	0.83	3.05	3.3	0.003	0.60	0.0	0.04	17.00	0.00	2.576	5.81	2.76	8.9	91.0	0.1	-1.73	0.21	0.68	0.83	2.78	6338	808	2	0	0	0	0	logfile

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