Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8F7C	28902	2024-09-27	2022-11-18	3.92	4.16	3.93	4.2	0.002	0.52	0.0	0.04	13.95	0.00	1.675	4.95	0.00	3.2	96.8	0.0	0.02	0.64	0.82	2.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15925	2009	7	0	0	0	0	logfile
✔	8G3V	29710	2024-09-28	2023-02-08	2.2	2.84	2.21	2.7	0.014	1.61	4.0	0.09	14.34	0.01	2.257	0.54	0.00	3.9	95.8	0.3	-0.74	0.83	0.93	6.59	2.7	0.004	0.65	0.0	0.05	14.98	0.00	2.315	2.81	1.04	2.7	97.1	0.2	-0.04	0.94	0.76	0.90	6.14	20045	2500	28	0	61	0	0	logfile
✔	7XoL	33351	2024-09-25	2022-05-01	3.26	4.02	3.37	3.4	0.002	0.49	0.0	0.04	13.50	0.00	2.224	10.95	0.00	0.5	99.5	0.0	2.40	0.89	0.88	1.73	3.4	0.003	0.55	0.0	0.04	14.97	0.00	2.238	9.39	1.06	1.1	98.9	0.0	2.20	0.28	0.90	0.90	1.64	53970	7336	14	0	0	0	0	logfile
✔	7UH3	26504	2024-09-23	2022-03-25	2.99	3.63	2.98	3.5	0.003	0.61	0.0	0.04	10.05	0.00	1.909	4.09	0.00	2.0	98.0	0.0	0.91	0.48	0.84	2.83	3.5	0.003	0.73	0.0	0.04	13.63	0.00	2.275	7.87	1.86	2.0	98.0	0.0	2.32	1.33	0.49	0.86	0.84	3096	416	2	0	3	0	0	logfile
✔	8S92	40235	2024-09-26	2023-03-27	4.06	4.32	4.09	4.3	0.004	0.68	0.0	0.04	14.72	0.01	2.043	6.52	0.00	13.5	86.1	0.4	-2.24	0.74	0.80	—	4.3	0.004	0.67	0.0	0.05	14.91	0.01	2.408	6.20	0.14	14.9	84.7	0.5	-2.15	0.39	0.76	0.81	—	12714	1590	6	0	0	0	0	logfile
✔	7UGD	26487	2024-09-23	2022-03-24	2.95	3.61	2.95	3.5	0.002	0.45	0.0	0.04	11.38	0.00	2.005	2.21	0.00	0.7	99.3	0.0	0.34	0.49	0.84	3.05	3.5	0.003	0.55	0.0	0.04	14.56	0.00	2.236	3.96	1.25	0.0	100.0	0.0	3.02	0.47	0.50	0.85	1.70	3079	415	2	0	3	0	0	logfile
✔	8CKZ	16707	2024-09-26	2023-02-16	3.07	3.27	3.09	3.2	0.005	0.90	0.0	0.05	12.35	0.01	1.966	3.43	0.00	1.1	98.9	0.0	-1.16	0.50	0.80	4.33	3.2	0.003	0.56	0.0	0.04	15.95	0.00	2.407	5.96	1.95	0.7	99.3	0.0	1.68	1.44	0.50	0.82	4.01	13910	1800	15	0	0	0	0	logfile
✔	7XUM	33474	2024-09-23	2022-05-19	3.8	3.49	3.48	3.7	0.002	0.57	0.0	0.04	13.82	0.00	1.938	6.52	0.00	3.7	96.3	0.0	-0.15	0.56	0.76	1.43	3.7	0.002	0.63	0.0	0.04	16.04	0.00	2.535	7.32	1.63	3.7	96.3	0.0	0.31	0.38	0.56	0.75	0.83	6155	816	2	0	1	0	0	logfile
✔	7YG2	33805	2024-09-29	2022-07-09	3.32	3.64	3.42	3.6	0.003	0.61	0.0	0.05	15.08	0.01	2.196	6.69	0.00	3.5	96.5	0.0	-0.43	0.68	0.68	1.12	3.6	0.004	0.65	0.0	0.05	15.89	0.00	2.388	12.39	2.92	4.1	95.9	0.0	-0.40	0.66	0.72	0.77	1.44	20783	2630	23	0	12	0	0	logfile
✘	7RBU	24402	2024-09-23	2021-07-06	3.7	2.38	—	2.2	0.006	0.80	0.0	0.05	12.81	0.00	2.167	6.95	0.00	9.1	90.7	0.2	-2.50	0.74	0.77	4.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4107	510	6	0	7	0	0	logfile
✔	8FM9	29289	2024-09-30	2022-12-22	3.2	3.48	3.49	3.6	0.002	0.45	0.0	0.04	11.34	0.00	1.810	6.85	0.00	2.7	97.3	0.0	0.35	0.46	0.71	2.23	3.5	0.008	0.85	1.0	0.05	13.60	0.00	2.141	7.95	2.30	6.9	93.0	0.2	0.40	1.45	0.49	0.78	2.45	76764	7692	24	0	0	0	29916	logfile
✔	6BUZ	7293	2024-09-26	2017-12-11	3.92	4.51	—	4.2	0.008	0.88	0.0	0.05	27.46	0.01	2.308	8.08	0.00	5.6	94.4	0.0	-5.03	0.85	0.86	3.06	4.2	0.005	0.77	0.0	0.04	28.46	0.00	2.050	17.33	3.75	5.7	94.3	0.0	0.05	1.12	0.85	0.86	1.82	12509	878	11	290	0	0	0	logfile
✔	7XoK	33350	2024-09-25	2022-05-01	2.7	3.82	2.75	3.2	0.003	0.50	0.0	0.04	13.15	0.00	2.160	10.61	0.00	1.1	98.9	0.0	2.23	0.87	0.86	1.97	3.2	0.003	0.58	0.0	0.04	14.86	0.00	2.464	9.79	0.83	0.9	99.1	0.0	2.05	0.29	0.87	0.86	1.76	53970	7336	14	0	0	0	0	logfile
✔	8EJE	28179	2024-09-25	2022-09-16	3.69	3.95	3.70	3.9	0.023	2.14	0.0	0.16	15.07	0.01	2.317	2.39	0.00	6.0	94.0	0.0	-0.11	0.82	0.79	2.65	3.8	0.004	0.98	0.0	0.05	15.38	0.00	2.401	11.36	4.52	9.7	90.3	0.0	-0.65	1.02	0.81	0.78	2.02	9426	1068	33	0	66	0	0	logfile
✔	7UGV	26497	2024-09-23	2022-03-25	2.94	3.59	2.94	3.4	0.003	0.57	0.0	0.04	9.13	0.00	2.111	3.29	0.00	0.7	99.3	0.0	2.34	0.50	0.85	4.24	3.4	0.003	0.60	0.0	0.04	13.30	0.00	2.267	4.08	1.54	0.2	99.8	0.0	3.64	1.29	0.51	0.87	2.81	3107	418	2	0	3	0	0	logfile
✔	7XoJ	33349	2024-09-25	2022-05-01	2.8	3.84	2.82	3.2	0.003	0.48	0.0	0.04	13.28	0.00	2.189	10.04	0.00	0.9	99.1	0.0	2.28	0.88	0.87	2.08	3.2	0.005	0.61	0.0	0.04	14.92	0.00	2.466	9.92	0.92	1.4	98.6	0.0	1.99	0.28	0.88	0.88	1.96	53970	7336	14	0	0	0	0	logfile
✔	7ZGX	14714	2024-09-29	2022-04-04	2.88	3.61	2.97	3.4	0.005	0.77	0.0	0.05	12.23	0.00	2.159	9.14	0.00	11.3	88.3	0.4	-3.11	0.71	0.86	4.42	3.4	0.004	0.63	0.0	0.05	13.72	0.00	2.453	5.75	1.47	10.1	89.8	0.1	-2.14	0.34	0.69	0.85	4.12	21351	2847	3	0	0	0	0	logfile
✔	8CR2	16802	2024-09-24	2023-03-07	4.2	4.42	4.19	5.1	0.004	1.07	1.0	0.06	13.24	0.01	1.914	20.12	0.00	5.8	94.2	0.0	-3.18	0.41	0.29	—	4.4	0.004	0.86	0.0	0.05	14.17	0.00	2.358	13.31	0.00	3.5	96.5	0.0	0.33	1.44	0.64	0.68	—	6838	855	5	0	1	0	0	logfile
✔	8i0Q	35106	2024-09-24	2023-01-11	4.45	4.83	5.07	4.4	0.003	0.59	0.0	0.04	12.56	0.00	2.167	9.44	0.00	5.1	94.9	0.0	-1.41	0.82	0.81	—	4.4	0.002	0.61	0.0	0.04	13.41	0.00	2.585	5.71	0.00	3.5	96.5	0.0	-0.74	0.45	0.82	0.82	—	8842	1192	8	0	0	0	0	logfile
✔	8G94	29861	2024-09-25	2023-02-21	3.15	3.43	3.12	3.3	0.006	0.72	0.0	0.05	13.02	0.00	2.206	6.51	0.00	4.1	95.9	0.0	-2.32	0.70	0.87	3.37	3.3	0.003	0.61	0.0	0.04	15.16	0.00	2.560	7.38	1.80	3.3	96.7	0.0	0.66	0.96	0.71	0.89	2.73	9222	1187	7	0	0	0	0	logfile

• ← previous
• Page 2 of 539
• next →