Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8QPE	18548	2024-09-25	2023-10-01	3.1	3.23	3.01	3.0	0.002	0.47	0.0	0.11	15.70	0.00	2.202	8.57	0.00	1.9	98.1	0.0	1.39	0.69	0.83	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54566	6251	21	236	1	0	0	logfile
✔	8KDE	37133	2024-09-29	2023-08-09	2.6	2.45	—	3.0	0.007	1.18	0.0	0.04	17.45	0.01	2.069	4.73	0.00	3.8	96.0	0.2	1.46	0.81	0.84	3.51	3.0	0.004	0.62	1.0	0.04	16.11	0.00	2.200	7.42	1.01	3.4	96.4	0.1	1.82	0.33	0.81	0.86	3.02	22087	2344	28	0	72	0	0	logfile
✔	8U53	41911	2024-09-25	2023-09-12	2.6	2.33	2.54	2.9	0.024	1.71	0.0	0.10	15.25	0.01	2.498	0.88	0.00	1.1	98.9	0.0	0.71	0.78	0.81	4.12	2.9	0.003	0.58	0.0	0.04	16.95	0.00	2.513	6.39	1.40	2.3	97.7	0.0	2.04	0.64	0.75	0.82	2.16	9562	1074	6	0	98	0	0	logfile
✔	8UTM	42542	2024-09-26	2023-10-31	4.32	3.34	4.34	2.2	0.009	1.55	9.0	0.09	7.59	0.01	2.603	0.05	0.00	2.7	97.3	0.0	-1.95	0.75	0.74	—	2.2	0.005	0.66	0.0	0.04	4.71	0.00	2.360	1.52	0.00	4.9	95.1	0.0	0.72	1.81	0.79	0.77	—	14176	2856	8	0	0	0	0	logfile
✔	8V0V	42871	2024-09-30	2023-11-17	3.1	3.36	3.20	3.4	0.005	0.81	0.0	0.06	14.52	0.01	2.286	3.19	0.00	5.1	94.8	0.1	-1.56	0.63	0.79	2.60	3.4	0.004	0.59	0.0	0.04	15.26	0.00	2.426	3.98	1.47	4.8	95.1	0.1	-0.26	0.31	0.65	0.81	2.45	25051	3132	12	0	41	0	0	logfile
✔	8RWK	19549	2024-09-27	2024-02-05	3.8	3.22	3.89	3.7	0.020	1.77	4.0	0.10	13.76	0.01	2.244	5.27	0.00	1.4	98.6	0.0	0.22	0.65	0.71	2.53	3.6	0.004	0.65	0.0	0.05	16.25	0.00	2.361	5.60	2.08	3.0	97.0	0.0	0.77	2.41	0.74	0.78	2.31	15416	1980	8	0	4	0	0	logfile
✔	8QRH	18614	2024-09-26	2023-10-07	3.6	3.69	3.47	3.7	0.003	0.72	0.0	0.05	12.21	0.01	2.255	2.66	0.00	3.6	96.4	0.0	-0.83	0.58	0.81	2.89	3.7	0.003	0.74	0.0	0.04	15.10	0.00	2.208	7.78	2.00	4.2	95.8	0.0	-0.33	0.74	0.59	0.82	2.24	12951	1689	9	0	3	0	0	logfile
✔	8YF1	39207	2024-09-25	2024-02-23	3.38	3.65	3.56	3.8	0.005	0.64	0.0	0.04	15.67	0.00	2.211	12.16	0.00	3.0	97.0	0.0	0.86	0.44	0.63	1.23	3.7	0.003	0.59	0.0	0.04	16.72	0.00	2.605	9.63	1.96	2.4	97.6	0.0	1.43	0.30	0.43	0.64	0.59	9187	1156	4	0	2	0	0	logfile
✔	8V3Q	42950	2024-09-23	2023-11-28	3.1	3.32	2.96	3.3	0.009	1.22	0.0	0.07	14.29	0.01	1.370	1.78	0.00	2.8	97.2	0.0	-1.29	0.66	0.76	4.11	3.3	0.003	0.58	0.0	0.04	15.28	0.00	1.885	4.21	1.64	1.4	98.6	0.0	0.83	0.53	0.77	0.85	3.46	4030	503	4	0	9	0	0	logfile
✔	8R23	18834	2024-09-26	2023-11-02	3.2	3.07	3.25	3.2	0.004	0.66	0.0	0.04	14.39	0.01	1.978	6.96	0.00	6.6	93.4	0.0	-5.33	0.80	0.83	2.57	3.2	0.003	0.60	0.0	0.04	16.24	0.00	2.071	5.05	1.58	4.4	95.6	0.0	-0.32	0.42	0.80	0.84	1.20	11979	1548	4	0	2	0	0	logfile
✔	8UK1	42342	2024-09-30	2023-10-11	3.0	3.18	3.02	3.2	0.004	0.75	0.0	0.05	13.80	0.01	2.297	2.34	0.00	3.9	96.1	0.0	-0.95	0.67	0.81	3.00	3.2	0.004	0.59	0.0	0.05	15.14	0.00	2.458	3.75	1.75	3.5	96.5	0.0	0.00	1.13	0.69	0.84	2.96	24806	3097	15	0	46	0	0	logfile
✔	9BXQ	45008	2024-09-24	2024-05-22	3.1	3.01	2.97	3.2	0.011	1.84	0.0	0.09	10.87	0.01	1.454	27.94	0.00	6.7	93.3	0.0	-2.37	0.30	0.68	3.66	3.1	0.003	0.59	0.0	0.05	13.20	0.00	2.502	3.35	0.00	5.3	94.7	0.0	-2.71	1.22	0.35	0.78	4.80	7182	462	6	0	0	0	3654	logfile
✔	8V5A	42981	2024-09-27	2023-11-30	3.0	2.17	3.05	2.0	0.009	1.05	0.0	0.06	13.03	0.01	2.024	6.89	0.00	3.7	96.3	0.0	-0.64	0.78	0.74	3.21	2.0	0.004	0.67	0.0	0.04	16.13	0.00	2.460	7.26	2.25	2.3	97.7	0.0	-0.03	0.95	0.77	0.80	2.57	13056	1701	6	0	0	0	0	logfile
✔	8UTF	42539	2024-09-25	2023-10-31	2.73	2.99	2.86	2.9	0.003	0.45	0.0	0.04	16.15	0.00	2.222	3.02	0.00	1.5	98.5	0.0	0.28	0.69	0.81	3.67	2.9	0.004	0.59	0.0	0.05	15.98	0.00	2.491	3.53	2.24	1.5	98.5	0.0	1.36	1.46	0.77	0.86	2.95	9827	1248	15	0	9	134	0	logfile
✔	8RT9	19483	2024-09-28	2024-01-25	2.97	3.65	2.97	3.4	0.007	0.79	1.0	0.05	12.66	0.00	2.370	9.90	0.00	2.4	97.6	0.0	2.55	0.74	0.84	3.34	3.4	0.004	0.69	0.0	0.04	16.54	0.00	2.363	9.76	1.93	1.7	98.3	0.0	2.96	0.71	0.69	0.87	2.61	17866	2395	10	0	0	0	0	logfile
✔	8R9X	19015	2024-09-23	2023-11-30	3.1	3.71	3.14	3.5	0.004	0.65	0.0	0.04	16.48	0.00	2.277	5.12	0.00	4.4	95.6	0.0	-0.47	0.72	0.88	3.81	3.5	0.003	0.66	0.0	0.04	14.63	0.00	2.481	5.12	1.75	3.7	96.3	0.0	0.06	0.54	0.65	0.86	3.87	3782	461	8	0	15	0	0	logfile
✔	8K7U	36943	2024-09-28	2023-07-27	3.37	3.47	3.36	3.5	0.006	0.74	0.0	0.05	14.05	0.00	2.046	7.47	0.00	6.9	93.1	0.0	-2.17	0.78	0.85	3.07	3.4	0.004	0.61	0.0	0.04	16.58	0.00	2.444	3.95	2.84	5.8	94.2	0.0	-1.28	0.43	0.79	0.87	2.18	20747	2555	4	0	0	0	0	logfile
✔	8ZWi	60528	2024-09-23	2024-06-13	3.0	2.75	2.12	3.2	0.011	0.86	0.0	0.06	11.26	0.00	2.261	8.83	0.00	6.8	93.2	0.0	-3.70	0.44	0.86	5.14	3.2	0.007	1.49	0.0	0.05	15.95	0.00	2.176	5.95	2.71	3.7	96.3	0.0	-2.07	0.90	0.43	0.87	5.55	2526	366	6	0	0	0	0	logfile
✔	8V0Q	42866	2024-09-30	2023-11-17	3.9	4.16	3.93	4.1	0.004	0.82	0.0	0.06	14.49	0.01	2.279	3.47	0.00	4.7	95.3	0.0	-1.79	0.78	0.79	1.36	4.1	0.005	0.68	0.0	0.05	15.34	0.00	2.483	7.53	1.60	6.0	93.9	0.0	-0.64	0.44	0.79	0.81	1.22	24795	3105	12	0	42	0	0	logfile
✔	8WTU	37842	2024-09-23	2023-10-19	2.7	2.73	2.63	2.8	0.003	0.68	0.0	0.04	15.11	0.01	2.301	2.07	0.00	3.7	96.3	0.0	0.10	0.58	0.80	2.70	2.7	0.003	0.60	0.0	0.04	15.09	0.01	2.556	2.19	1.97	4.1	95.9	0.0	1.41	1.28	0.70	0.88	3.02	4348	542	2	0	1	0	0	logfile

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