Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8RT8	19482	2024-09-25	2024-01-25	3.05	4.11	3.09	3.4	0.006	0.81	0.0	0.05	13.74	0.01	1.973	17.21	0.07	3.8	96.2	0.0	-0.89	0.79	0.86	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55802	7184	46	0	0	0	0	logfile
✔	8VT2	43516	2024-09-25	2024-01-25	3.14	3.48	3.27	3.5	0.014	0.96	0.0	0.06	15.92	0.01	2.144	7.00	0.00	7.7	92.3	0.0	-1.30	0.72	0.84	3.85	3.5	0.004	0.60	0.0	0.05	14.23	0.00	2.520	3.97	1.03	5.5	94.5	0.0	0.03	0.28	0.65	0.81	3.29	10674	1362	12	0	18	0	0	logfile
✔	8Y2C	38850	2024-09-23	2024-01-25	3.16	3.42	3.25	3.5	0.003	0.51	0.0	0.04	19.03	0.00	2.160	5.35	0.00	4.2	95.8	0.0	0.76	0.55	0.83	1.39	3.5	0.002	0.48	0.0	0.04	17.73	0.00	2.626	3.45	4.28	3.6	96.4	0.0	1.17	0.17	0.55	0.83	0.89	4207	529	2	0	2	0	0	logfile
✔	8VT3	43517	2024-09-25	2024-01-25	3.33	3.63	3.39	3.6	0.011	0.87	0.0	0.06	18.19	0.01	2.153	4.40	0.00	8.1	91.9	0.0	-3.58	0.79	0.87	3.85	3.6	0.003	0.59	0.0	0.04	14.61	0.00	2.505	2.97	1.03	4.4	95.6	0.0	-1.61	0.96	0.77	0.87	2.99	10758	1377	15	0	18	0	0	logfile
✘	8Y2E	38852	2024-09-23	2024-01-25	3.03	3.33	3.15	3.3	0.005	0.61	0.0	0.04	17.53	0.00	2.283	3.56	0.00	4.4	95.6	0.0	1.57	0.65	0.86	3.39	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4214	528	2	0	3	0	0	logfile
✔	8RT9	19483	2024-09-28	2024-01-25	2.97	3.65	2.97	3.4	0.007	0.79	1.0	0.05	12.66	0.00	2.370	9.90	0.00	2.4	97.6	0.0	2.55	0.74	0.84	3.34	3.4	0.004	0.69	0.0	0.04	16.54	0.00	2.363	9.76	1.93	1.7	98.3	0.0	2.96	0.71	0.69	0.87	2.61	17866	2395	10	0	0	0	0	logfile
✔	8RT7	19481	2024-09-25	2024-01-25	2.93	4.03	2.97	3.2	0.009	0.75	1.0	0.05	13.72	0.01	2.051	8.94	0.07	2.5	97.5	0.0	-0.67	0.72	0.75	3.20	3.3	0.005	0.83	0.0	0.05	14.93	0.00	2.363	10.51	1.08	2.5	97.5	0.0	0.15	1.25	0.79	0.89	2.45	55802	7184	46	0	0	0	0	logfile
✔	8RTB	19485	2024-09-26	2024-01-25	3.83	4.65	3.83	4.1	0.006	0.79	0.0	0.05	14.19	0.01	2.126	12.18	0.00	6.7	93.3	0.0	-1.38	0.63	0.65	1.25	4.1	0.006	0.88	0.0	0.05	16.06	0.01	2.396	18.43	2.33	5.1	94.9	0.0	-0.38	1.75	0.70	0.85	1.12	14132	1804	9	0	0	0	0	logfile
✔	8RT5	19479	2024-09-27	2024-01-25	2.69	3.93	2.72	3.3	0.007	0.79	0.0	0.05	12.35	0.01	1.988	9.86	0.00	1.5	98.5	0.0	0.37	0.80	0.74	3.88	3.3	0.006	1.00	0.0	0.06	16.09	0.00	2.462	14.19	1.21	0.4	99.6	0.0	0.15	3.13	0.89	0.89	2.91	17456	2144	32	0	0	0	0	logfile
✔	8VSP	43501	2024-09-25	2024-01-24	3.12	2.30	3.11	2.0	0.004	0.53	0.0	0.04	9.48	0.00	2.029	8.71	0.51	3.3	96.7	0.0	0.72	0.78	0.79	3.96	2.0	0.003	0.56	0.0	0.04	14.00	0.00	2.580	5.40	2.38	3.2	96.8	0.0	2.19	0.55	0.77	0.79	3.05	11388	1476	12	0	3	0	0	logfile
✔	8VSU	43506	2024-09-27	2024-01-24	2.86	3.11	2.98	3.2	0.013	1.76	0.0	0.09	12.49	0.01	2.529	0.13	0.12	1.8	98.2	0.0	-1.20	0.70	0.85	4.70	3.2	0.004	0.92	0.0	0.04	15.92	0.00	2.322	1.71	0.84	2.1	97.9	0.0	1.62	1.83	0.64	0.86	3.53	15240	941	4	0	1	0	7646	logfile
✔	8VSD	43494	2024-09-27	2024-01-23	3.2	3.33	—	3.3	0.005	0.72	0.0	0.05	13.63	0.00	1.833	7.10	0.00	4.8	95.2	0.0	-1.79	0.72	0.81	2.95	3.3	0.003	0.57	0.0	0.04	14.37	0.00	1.937	4.54	1.55	4.1	95.9	0.0	-1.15	0.34	0.73	0.83	2.36	16276	2109	12	0	23	0	0	logfile
✔	8Y16	38826	2024-09-24	2024-01-23	2.98	4.25	3.28	3.0	0.004	0.68	1.0	0.06	14.69	0.01	2.088	7.41	0.12	5.8	93.9	0.4	-0.19	0.71	0.47	1.89	3.0	0.003	0.67	0.0	0.04	14.69	0.00	2.026	6.58	0.78	5.1	94.8	0.1	-0.20	0.99	0.84	0.81	1.87	39510	4820	31	0	84	0	0	logfile
✔	8Y0Y	38823	2024-09-24	2024-01-23	2.86	3.14	2.89	3.1	0.002	0.45	0.0	0.04	12.37	0.00	2.292	3.05	0.18	3.3	96.7	0.0	0.04	0.65	0.74	2.94	3.1	0.003	0.68	0.0	0.05	15.31	0.00	2.444	3.87	4.44	6.2	93.8	0.0	-0.92	1.20	0.66	0.77	3.11	5027	652	4	0	1	0	0	logfile
✔	8RRR	19462	2024-09-23	2024-01-23	3.4	3.47	2.39	3.7	0.006	0.83	0.0	0.05	15.10	0.00	2.315	9.82	0.64	9.4	90.6	0.0	-4.20	0.43	0.79	5.28	3.7	0.006	0.80	0.0	0.06	15.66	0.00	2.531	8.72	4.04	9.6	90.4	0.0	-4.36	1.53	0.41	0.78	4.92	4925	735	10	0	0	0	0	logfile
✔	8VS6	43489	2024-09-26	2024-01-23	2.73	2.90	2.73	2.9	0.004	0.74	0.0	0.05	16.49	0.00	1.899	1.66	1.65	3.2	96.8	0.0	-0.31	0.72	0.79	3.25	2.9	0.003	0.59	0.0	0.05	15.99	0.00	1.850	3.72	2.70	4.0	96.0	0.0	-0.75	0.37	0.71	0.79	3.05	12453	800	10	0	23	0	6015	logfile
✔	8VSC	43493	2024-09-28	2024-01-23	3.0	3.24	3.00	3.2	0.004	0.73	0.0	0.04	14.82	0.01	2.169	4.09	0.42	2.9	97.1	0.0	-1.07	0.64	0.76	3.33	3.2	0.003	0.59	0.0	0.04	15.63	0.00	2.394	5.34	1.98	4.3	95.7	0.0	-1.14	0.94	0.64	0.78	2.69	17630	1139	3	0	0	0	8786	logfile
✔	8VSB	43492	2024-09-24	2024-01-23	2.93	3.23	2.99	3.2	0.009	0.95	0.0	0.05	12.83	0.01	2.198	5.48	0.00	7.7	92.3	0.0	-2.77	0.71	0.82	4.21	3.2	0.002	0.63	0.0	0.04	15.72	0.00	2.546	3.34	2.17	4.0	96.0	0.0	-1.61	0.78	0.65	0.81	3.23	7519	969	3	0	0	0	0	logfile
✔	8VRW	43488	2024-09-25	2024-01-22	3.03	2.28	3.04	2.1	0.004	0.60	0.0	0.05	10.40	0.02	2.030	18.92	0.52	4.3	95.7	0.0	-1.34	0.67	0.64	2.23	1.5	0.003	0.66	0.0	0.04	13.86	0.01	2.384	11.75	2.52	4.1	95.9	0.0	-0.83	1.14	0.67	0.67	2.26	10413	1272	9	0	0	0	0	logfile
✔	8XZG	38795	2024-09-24	2024-01-21	3.2	3.59	3.31	3.6	0.008	0.88	0.0	0.06	14.04	0.00	2.173	9.19	1.56	6.1	93.8	0.1	-2.72	0.62	0.77	2.19	3.6	0.003	0.57	0.0	0.04	15.96	0.00	2.428	4.14	2.85	2.9	97.1	0.0	0.14	0.43	0.57	0.76	1.51	7172	919	5	0	0	0	0	logfile

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