Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9CER	45516	2024-09-26	2024-06-27	4.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14598	612	2	142	0	0	6561	logfile
✘	9CEV	45520	2024-09-26	2024-06-27	3.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14047	600	6	131	3	3	6353	logfile
✘	9CEZ	45524	2024-09-26	2024-06-27	3.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13540	600	6	115	3	3	6178	logfile
✔	9CF2	45527	2024-09-28	2024-06-27	3.15	2.38	3.26	2.8	0.002	0.61	0.0	0.04	18.51	0.00	1.441	3.97	0.00	1.4	98.6	0.0	2.60	0.67	0.60	2.80	2.8	0.003	0.58	0.0	0.04	21.00	0.00	2.383	5.11	0.51	2.9	97.1	0.0	1.38	1.44	0.73	0.77	3.26	18387	888	7	121	0	0	8649	logfile
✘	9CEX	45522	2024-09-26	2024-06-27	3.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14679	600	8	151	3	3	6578	logfile
✔	9CF3	45528	2024-09-27	2024-06-27	3.2	3.49	3.29	3.5	0.002	0.72	0.0	0.05	18.41	0.00	1.968	5.72	0.00	2.2	97.8	0.0	2.31	0.66	0.61	3.23	3.5	0.004	0.59	0.0	0.04	20.49	0.00	2.210	5.21	1.52	3.4	96.6	0.0	1.28	2.77	0.74	0.80	3.10	17651	888	5	98	0	0	8383	logfile
✘	9CEY	45523	2024-09-26	2024-06-27	3.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13829	607	6	121	3	3	6298	logfile
✔	9CEP	45506	2024-09-28	2024-06-26	3.13	3.60	3.12	3.2	0.007	0.75	0.0	0.04	13.53	0.00	2.092	5.97	0.01	1.3	98.6	0.1	0.78	0.56	0.89	3.19	3.2	0.004	0.48	0.0	0.03	14.39	0.00	2.560	4.03	0.39	1.0	99.0	0.0	4.62	0.87	0.56	0.88	2.53	71669	10027	37	0	0	0	0	logfile
✔	9CEo	45505	2024-09-29	2024-06-26	2.76	3.07	2.80	3.0	0.003	0.65	0.0	0.04	12.76	0.00	2.121	8.18	0.03	1.7	98.2	0.1	0.09	0.58	0.85	2.90	3.0	0.003	0.58	0.0	0.03	15.17	0.00	2.118	5.02	1.27	0.7	99.3	0.0	4.92	0.40	0.58	0.87	2.44	73416	10260	38	0	0	0	0	logfile
✔	9CEJ	45503	2024-09-28	2024-06-26	2.53	2.84	2.56	2.8	0.003	0.60	0.0	0.04	12.85	0.00	2.060	7.19	0.04	1.7	98.2	0.1	0.38	0.56	0.84	3.63	2.8	0.003	0.48	0.0	0.03	15.14	0.00	2.370	4.41	1.51	0.7	99.3	0.0	4.44	1.23	0.55	0.85	3.31	69696	9720	36	0	0	0	0	logfile
✔	9CEM	45504	2024-09-28	2024-06-26	2.46	2.77	2.48	2.8	0.003	0.61	0.0	0.04	13.44	0.00	2.021	7.74	0.04	1.1	98.9	0.0	0.00	0.57	0.85	3.87	2.7	0.003	0.50	0.0	0.03	15.80	0.00	2.277	4.32	1.69	0.6	99.4	0.0	4.14	0.37	0.56	0.86	3.63	72372	9990	37	0	0	0	0	logfile
✔	9FTJ	50747	2024-09-26	2024-06-24	4.0	4.14	3.87	4.0	0.007	0.64	0.0	0.05	15.42	0.00	2.304	5.97	0.00	5.1	94.9	0.0	-0.50	0.75	0.88	—	4.0	0.004	0.59	0.0	0.04	16.05	0.00	2.565	5.08	5.00	3.7	96.3	0.0	0.46	0.92	0.74	0.87	—	12045	1570	5	0	0	0	0	logfile
✔	9FTi	50746	2024-09-28	2024-06-24	3.5	3.01	3.49	3.0	0.005	0.60	0.0	0.04	16.70	0.00	2.028	5.56	0.27	5.7	94.3	0.0	-1.77	0.70	0.80	2.93	3.0	0.005	0.81	1.0	0.05	17.38	0.00	2.388	4.88	4.72	3.5	96.5	0.0	-0.66	0.93	0.68	0.77	2.11	19935	2780	5	0	0	0	0	logfile
✔	9FTG	50744	2024-09-29	2024-06-24	3.1	3.38	3.05	3.3	0.003	0.48	0.0	0.04	15.40	0.00	2.032	4.17	0.00	6.2	93.8	0.0	-0.54	0.71	0.90	3.62	3.3	0.002	0.54	0.0	0.04	15.83	0.00	2.374	3.24	2.88	5.9	94.1	0.0	0.29	0.34	0.67	0.89	3.28	21205	2795	10	0	5	0	0	logfile
✔	9FTH	50745	2024-09-29	2024-06-24	2.9	3.12	2.93	3.1	0.002	0.46	0.0	0.04	15.69	0.00	2.029	3.58	0.00	2.4	97.6	0.0	0.58	0.77	0.88	3.17	3.1	0.004	0.79	0.0	0.04	16.27	0.00	2.386	4.30	2.20	5.1	94.9	0.0	0.31	0.96	0.78	0.89	3.48	22780	3010	5	0	0	0	0	logfile
✔	9iJE	60629	2024-09-25	2024-06-22	2.34	2.89	2.69	2.9	0.005	0.70	0.0	0.05	15.99	0.01	2.240	6.01	2.15	2.2	97.8	0.0	1.09	0.60	0.79	3.56	2.9	0.003	0.55	0.0	0.04	16.72	0.00	2.562	2.71	2.86	2.2	97.8	0.0	1.57	0.37	0.60	0.80	3.36	9340	1227	7	0	1	1	0	logfile
✔	9iJD	60628	2024-09-25	2024-06-22	2.76	3.23	2.98	3.2	0.006	0.78	1.0	0.05	16.98	0.01	2.181	14.24	1.73	3.1	96.8	0.2	0.20	0.55	0.73	2.81	3.2	0.002	0.58	0.0	0.04	17.63	0.00	2.473	6.31	3.05	2.8	97.2	0.0	0.82	1.15	0.56	0.74	2.12	9371	1227	7	0	1	0	0	logfile
✔	9CC0	45430	2024-09-30	2024-06-20	3.31	3.66	3.24	3.5	0.003	0.54	0.0	0.04	13.25	0.00	1.995	5.51	0.08	1.9	98.1	0.0	1.17	0.83	0.85	2.83	3.5	0.004	0.57	0.0	0.04	14.72	0.00	1.912	5.16	1.17	1.9	98.1	0.0	1.35	0.32	0.84	0.88	2.27	24603	3128	13	0	22	0	0	logfile
✔	8ZYN	60573	2024-09-24	2024-06-18	3.27	3.51	3.26	3.5	0.003	0.56	0.0	0.04	15.25	0.00	2.256	5.78	0.86	2.1	97.9	0.0	1.18	0.59	0.83	1.15	3.5	0.003	0.55	0.0	0.04	15.72	0.00	2.627	5.49	3.03	2.5	97.5	0.0	1.36	0.33	0.58	0.83	1.42	6640	840	4	0	0	0	0	logfile
✔	8ZYQ	60576	2024-09-24	2024-06-18	3.18	3.41	3.17	3.4	0.005	0.59	0.0	0.04	16.95	0.00	2.234	6.78	0.46	2.8	97.2	0.0	1.48	0.57	0.85	2.58	3.4	0.003	0.54	0.0	0.04	16.19	0.00	2.535	5.53	2.28	2.7	97.3	0.0	1.80	0.36	0.55	0.83	2.58	6329	796	5	0	1	0	0	logfile

• ← previous
• Page 3 of 541
• next →