Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QZP	18779	2024-09-30	2023-10-28	4.15	4.36	4.20	4.2	0.005	0.80	0.0	0.04	14.08	0.01	2.205	22.06	1.23	8.0	91.4	0.6	-1.51	0.78	0.75	—	4.2	0.004	0.75	0.0	0.04	13.81	0.01	2.371	16.68	0.00	7.7	92.2	0.1	-1.01	0.46	0.78	0.76	—	25393	3273	8	0	0	0	0	logfile
✔	8USP	42510	2024-09-24	2023-10-28	3.3	4.27	—	4.0	0.003	0.66	8.0	0.04	14.46	0.00	1.875	7.99	0.15	3.0	97.0	0.0	1.03	0.80	0.79	0.78	4.0	0.003	0.64	0.0	0.04	16.23	0.00	2.373	8.08	1.70	3.1	96.9	0.0	1.34	0.45	0.83	0.83	1.05	47406	5892	6	0	0	0	0	logfile
✔	8WXE	37904	2024-09-23	2023-10-28	4.0	4.62	3.94	4.5	0.004	0.86	0.0	0.04	18.18	0.01	2.178	19.10	2.04	6.0	94.0	0.0	-0.75	0.55	0.72	—	4.5	0.004	0.89	0.0	0.04	18.41	0.00	2.476	12.77	8.76	4.8	95.2	0.0	-0.30	0.94	0.56	0.74	—	4388	548	9	0	1	0	0	logfile
✔	8WX5	37901	2024-09-23	2023-10-27	3.91	4.09	3.85	4.0	0.004	0.87	0.0	0.04	14.58	0.00	2.184	14.86	0.50	6.6	93.0	0.4	-1.72	0.50	0.78	1.63	4.0	0.004	0.76	0.0	0.04	16.95	0.00	2.543	12.05	2.99	6.2	93.8	0.0	0.72	1.01	0.52	0.81	1.19	3857	504	2	0	0	0	0	logfile
✔	8WX3	37899	2024-09-24	2023-10-27	2.83	2.64	2.76	2.9	0.003	0.70	0.0	0.04	12.63	0.00	2.206	5.93	0.00	3.3	96.5	0.2	0.51	0.41	0.73	2.66	2.8	0.003	0.60	0.0	0.04	15.17	0.00	2.587	5.73	2.56	3.1	96.7	0.2	1.65	1.81	0.56	0.84	2.50	7498	974	2	0	0	0	0	logfile
✔	8WX0	37896	2024-09-26	2023-10-27	3.7	3.44	3.68	3.6	0.003	0.58	0.0	0.05	18.73	0.00	2.207	10.32	0.57	4.5	95.3	0.2	0.35	0.65	0.82	2.04	3.6	0.005	0.68	0.0	0.05	18.84	0.00	2.464	8.36	6.75	5.1	94.8	0.2	0.20	0.22	0.68	0.83	1.75	13672	1782	7	15	0	0	0	logfile
✔	8WX4	37900	2024-09-24	2023-10-27	3.12	3.35	3.11	3.4	0.004	0.71	0.0	0.04	14.16	0.00	1.335	4.66	1.53	3.5	96.5	0.0	-1.64	0.60	0.80	1.59	3.4	0.003	0.55	0.0	0.04	15.15	0.00	2.578	5.39	2.04	2.5	97.5	0.0	1.43	1.31	0.57	0.82	2.42	7512	976	6	0	0	0	0	logfile
✔	8WX2	37898	2024-09-24	2023-10-27	3.44	3.85	3.44	3.7	0.002	0.65	0.0	0.04	14.51	0.01	2.033	8.01	1.99	6.5	93.0	0.5	-2.25	0.56	0.68	0.73	3.7	0.004	0.85	0.0	0.05	16.35	0.01	2.531	11.43	2.99	7.6	92.4	0.0	0.95	0.63	0.59	0.74	0.53	6800	880	2	0	0	0	0	logfile
✘	8URU	42501	2024-09-24	2023-10-26	3.7	3.90	3.70	3.9	0.005	0.98	1.0	0.05	21.44	0.01	2.058	21.18	3.21	10.9	88.1	0.9	-2.97	0.70	0.74	1.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8895	1001	6	43	1	0	0	logfile
✔	8URQ	42497	2024-09-24	2023-10-26	3.3	3.57	3.32	3.6	0.017	1.25	1.0	0.06	21.28	0.01	1.769	18.16	4.61	10.8	88.9	0.3	-3.76	0.71	0.71	1.02	3.6	0.005	0.75	0.0	0.04	20.87	0.00	1.835	10.54	4.94	12.7	87.3	0.0	-3.06	0.52	0.72	0.74	0.97	8569	993	6	31	1	0	0	logfile
✔	8QZC	18774	2024-09-25	2023-10-26	3.29	3.49	3.36	3.5	0.004	0.81	0.0	0.05	13.36	0.01	2.246	3.27	0.00	4.4	95.6	0.0	-1.37	0.72	0.78	2.47	3.6	0.003	0.61	0.0	0.04	15.12	0.00	2.342	6.11	1.52	4.2	95.8	0.0	0.53	0.34	0.74	0.81	1.87	11468	1402	4	0	4	0	0	logfile
✔	8QYJ	18755	2024-09-28	2023-10-26	2.73	3.16	2.80	3.0	0.002	0.44	0.0	0.04	13.65	0.00	2.235	2.65	0.00	2.0	98.0	0.0	1.76	0.79	0.88	3.08	3.0	0.003	0.52	0.0	0.04	15.91	0.00	2.208	2.21	1.28	2.3	97.7	0.0	1.79	0.28	0.76	0.88	2.93	19402	2498	13	0	3	0	0	logfile
✔	8QYM	18758	2024-09-29	2023-10-26	2.73	3.22	2.84	3.1	0.002	0.47	0.0	0.04	13.61	0.01	2.215	2.77	0.04	2.4	97.6	0.0	1.18	0.81	0.89	3.16	3.1	0.004	0.81	1.0	0.04	15.73	0.00	1.693	3.06	0.88	2.6	97.4	0.0	1.21	0.90	0.80	0.90	2.80	22235	2848	14	0	18	0	0	logfile
✔	8QYS	18761	2024-09-25	2023-10-26	3.89	4.28	3.89	4.1	0.003	0.57	2.0	0.04	14.29	0.00	2.222	9.04	0.00	10.1	89.9	0.0	-1.10	0.85	0.85	1.27	4.1	0.003	0.62	0.0	0.04	16.08	0.00	2.427	7.24	2.15	8.5	91.5	0.0	-0.96	0.30	0.85	0.85	1.05	57862	7588	34	0	0	0	0	logfile
✔	8WWP	37895	2024-09-26	2023-10-26	3.12	3.73	3.38	3.6	0.003	0.51	0.0	0.04	17.17	0.00	2.262	9.97	0.07	4.3	95.5	0.2	0.23	0.74	0.72	0.91	3.6	0.004	0.65	0.0	0.05	17.73	0.00	2.470	10.88	7.25	5.0	95.0	0.0	0.28	0.95	0.68	0.69	1.10	13125	1749	3	0	0	0	0	logfile
✘	8QYo	18760	2024-09-23	2023-10-26	2.84	3.26	2.99	3.2	0.006	0.66	0.0	0.05	13.09	0.00	2.208	3.23	0.02	2.6	97.4	0.0	0.66	0.75	0.84	3.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	47940	6174	28	0	0	0	0	logfile
✔	8QZ8	18772	2024-09-29	2023-10-26	3.13	3.36	3.18	3.4	0.003	0.46	0.0	0.04	18.09	0.00	1.861	3.62	0.09	3.3	96.5	0.1	1.13	0.67	0.84	3.19	3.4	0.003	0.50	0.0	0.04	17.76	0.00	2.083	2.96	1.37	4.2	95.8	0.0	0.79	2.00	0.71	0.86	3.36	22629	1356	8	42	5	0	11077	logfile
✔	8QZ9	18773	2024-09-30	2023-10-26	2.95	3.51	3.11	3.3	0.003	0.48	0.0	0.04	13.37	0.00	2.202	3.64	0.00	4.1	95.9	0.0	0.82	0.79	0.87	3.07	3.3	0.003	0.57	0.0	0.04	15.61	0.00	2.481	2.95	1.46	4.3	95.7	0.0	0.95	0.90	0.76	0.85	2.60	24217	3213	16	0	21	0	0	logfile
✔	8QYL	18757	2024-09-29	2023-10-26	2.67	3.11	2.73	3.0	0.003	0.52	0.0	0.04	13.75	0.01	2.225	3.90	0.00	2.3	97.7	0.0	0.91	0.77	0.87	3.32	3.0	0.006	0.74	1.0	0.05	15.86	0.01	2.246	3.69	1.94	2.4	97.6	0.0	1.15	0.90	0.75	0.87	2.98	20997	2675	13	0	19	0	0	logfile
✔	8URE	42491	2024-09-24	2023-10-25	4.4	3.48	4.69	5.0	0.009	1.42	0.0	0.06	6.50	0.01	2.628	0.00	0.00	1.3	98.7	0.0	-0.01	0.78	0.79	—	4.8	0.004	0.53	0.0	0.03	4.26	0.00	2.616	0.83	0.00	3.0	97.0	0.0	0.95	0.65	0.81	0.82	—	8896	1792	8	0	0	0	0	logfile

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