Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ZSZ	60435	2024-09-23	2024-06-06	3.59	3.78	3.47	3.7	0.017	1.81	9.0	0.09	14.91	0.01	1.624	28.95	2.63	2.4	97.6	0.0	-0.01	0.59	0.75	1.47	3.8	0.003	0.68	0.0	0.04	16.54	0.00	1.956	14.47	2.42	3.1	96.9	0.0	1.63	0.74	0.59	0.75	1.20	4754	630	4	0	8	0	0	logfile
✔	8ZSB	60410	2024-09-23	2024-06-05	3.26	3.46	3.10	3.5	0.012	1.18	6.0	0.07	14.72	0.01	1.897	11.27	2.28	3.0	97.0	0.0	1.10	0.58	0.78	2.25	3.5	0.003	0.56	0.0	0.04	16.03	0.00	1.877	9.41	0.95	3.3	96.7	0.0	2.63	0.51	0.60	0.82	1.93	4798	614	4	0	2	0	0	logfile
✔	8ZSJ	60417	2024-09-24	2024-06-05	2.8	3.25	2.87	3.1	0.005	0.68	0.0	0.05	12.91	0.01	2.216	8.42	0.12	3.4	96.6	0.0	0.88	0.70	0.84	3.96	3.2	0.004	0.61	0.0	0.04	15.64	0.00	2.485	7.05	1.27	2.7	97.3	0.0	1.02	1.00	0.62	0.85	3.38	8118	1035	6	0	1	4	0	logfile
✔	8ZSP	60423	2024-09-24	2024-06-05	3.14	2.39	3.22	3.2	0.008	0.72	0.0	0.05	14.31	0.00	2.247	9.97	0.12	3.2	96.8	0.0	0.24	0.75	0.75	2.72	2.2	0.005	0.66	0.0	0.05	16.29	0.00	2.530	9.85	1.62	3.1	96.9	0.0	0.59	1.21	0.76	0.80	2.42	8076	1033	6	0	1	0	0	logfile
✔	9C4C	45181	2024-09-25	2024-06-04	3.09	3.22	3.10	3.2	0.004	0.71	0.0	0.04	22.35	0.00	1.733	4.00	0.00	0.7	99.3	0.0	-1.20	0.68	0.74	2.96	3.2	0.004	0.59	0.0	0.04	23.02	0.00	1.995	2.26	1.21	1.9	98.1	0.0	1.60	1.13	0.68	0.73	2.05	11490	542	10	77	8	0	5414	logfile
✔	9C4D	45182	2024-09-26	2024-06-04	4.17	4.62	4.15	4.3	0.002	0.48	0.0	0.03	22.14	0.00	2.085	9.43	2.34	0.7	99.3	0.0	4.02	0.82	0.73	—	4.3	0.003	0.59	0.0	0.04	22.97	0.00	1.390	10.74	0.00	1.4	98.6	0.0	2.57	1.89	0.83	0.77	—	12493	1120	18	154	16	0	0	logfile
✔	9C4o	45192	2024-09-25	2024-06-04	1.99	2.17	2.04	2.2	0.004	0.65	0.0	0.04	16.53	0.00	2.208	5.77	0.18	1.7	98.3	0.0	-0.01	0.61	0.81	6.59	2.2	0.004	0.63	0.0	0.04	16.65	0.01	2.144	4.77	0.92	2.0	98.0	0.0	-0.02	0.86	0.61	0.81	6.74	10166	661	2	0	2	111	4883	logfile
✔	9C47	45176	2024-09-24	2024-06-03	3.4	3.75	3.55	3.6	0.003	0.55	0.0	0.04	17.24	0.01	1.832	10.72	0.63	6.0	93.5	0.5	0.74	0.74	0.78	1.72	3.6	0.003	0.59	0.0	0.04	17.63	0.00	2.276	8.98	2.41	5.5	94.2	0.4	0.90	1.13	0.74	0.79	1.61	52167	3212	2	0	0	0	26380	logfile
✔	9C4B	45180	2024-09-23	2024-06-03	3.4	3.78	3.57	3.7	0.004	0.73	1.0	0.05	16.50	0.00	1.827	10.64	0.89	5.9	93.3	0.8	-0.46	0.62	0.72	1.52	3.7	0.003	0.55	0.0	0.04	16.89	0.00	2.314	7.04	2.07	7.0	92.8	0.3	-0.53	0.54	0.62	0.72	1.61	6110	393	1	0	0	0	3030	logfile
✔	8ZQE	60384	2024-09-24	2024-06-02	2.9	2.31	3.03	2.1	0.004	0.71	0.0	0.05	13.70	0.00	2.169	12.51	0.21	4.5	95.5	0.0	-0.15	0.74	0.75	2.45	2.2	0.003	0.69	0.0	0.04	17.17	0.00	2.407	10.84	2.64	3.9	96.1	0.0	0.08	1.34	0.77	0.80	2.25	8767	1131	6	0	0	0	0	logfile
✔	9FJU	50516	2024-09-27	2024-05-31	3.84	4.15	3.89	4.0	0.004	0.61	0.0	0.04	18.81	0.00	1.705	9.90	0.18	2.1	97.9	0.0	0.15	0.82	0.83	1.83	4.0	0.003	0.70	0.0	0.05	17.26	0.00	1.915	9.08	3.23	3.0	97.0	0.0	-0.03	0.43	0.83	0.83	1.61	15968	2010	22	0	24	0	0	logfile
✔	9FJo	50507	2024-09-25	2024-05-31	3.05	3.39	3.10	3.4	0.002	0.52	0.0	0.04	15.85	0.00	2.165	5.36	0.24	2.1	97.9	0.0	-0.37	0.68	0.84	2.73	3.4	0.003	0.59	0.0	0.04	16.66	0.00	2.444	5.62	2.37	2.9	97.1	0.0	0.50	0.29	0.68	0.84	2.35	11466	1452	8	0	8	0	0	logfile
✔	9FJM	50506	2024-09-26	2024-05-31	3.65	3.91	3.68	3.9	0.002	0.57	0.0	0.04	16.75	0.00	1.766	8.19	0.24	1.5	98.5	0.0	-0.30	0.74	0.82	2.24	3.9	0.005	0.70	0.0	0.05	17.27	0.00	1.975	8.53	4.11	3.1	96.9	0.0	0.01	0.95	0.75	0.83	2.02	11772	1487	16	0	16	0	0	logfile
✔	9FJY	50517	2024-09-27	2024-05-31	3.79	4.12	3.87	4.0	0.004	0.60	0.0	0.04	18.47	0.00	1.723	9.49	0.41	1.7	98.3	0.0	0.26	0.82	0.83	2.23	4.0	0.005	0.72	0.0	0.05	16.91	0.00	1.912	10.63	4.64	2.8	97.2	0.0	0.07	0.97	0.83	0.84	1.71	15968	2010	22	0	24	0	0	logfile
✔	8ZoY	60322	2024-09-25	2024-05-29	2.5	2.76	2.53	2.8	0.007	0.65	0.0	0.04	15.32	0.01	1.956	6.93	1.07	2.0	98.0	0.0	0.87	0.62	0.81	4.94	2.8	0.003	0.52	0.0	0.04	15.15	0.00	2.394	3.94	0.71	2.4	97.6	0.0	1.74	0.42	0.61	0.81	4.38	10701	666	4	0	3	70	5260	logfile
✔	8ZPB	60331	2024-09-25	2024-05-29	2.6	2.83	2.61	2.9	0.005	0.56	0.0	0.04	15.80	0.00	1.921	6.01	1.08	1.7	98.3	0.0	0.89	0.61	0.80	4.62	2.9	0.003	0.51	0.0	0.04	15.62	0.00	2.029	3.85	1.79	1.7	98.3	0.0	1.48	1.34	0.59	0.79	4.83	10676	667	4	0	5	54	5257	logfile
✔	8ZNG	60270	2024-09-23	2024-05-26	2.5	2.65	1.33	2.6	0.007	0.92	0.0	0.05	19.32	0.01	2.439	3.91	3.24	2.9	97.1	0.0	1.28	0.60	0.89	4.31	2.6	0.003	0.53	0.0	0.04	17.78	0.00	2.482	5.42	1.76	2.4	97.6	0.0	1.23	0.81	0.54	0.92	3.98	3347	416	2	0	2	16	0	logfile
✔	8ZNC	60267	2024-09-23	2024-05-26	2.41	2.55	1.33	2.5	0.007	0.97	0.0	0.05	19.34	0.01	2.408	6.47	1.76	2.4	97.6	0.0	0.66	0.53	0.90	3.96	2.5	0.004	0.60	0.0	0.05	19.13	0.00	2.439	5.12	1.76	1.9	98.1	0.0	0.99	0.95	0.50	0.91	3.93	3356	416	2	0	3	24	0	logfile
✔	8ZND	60268	2024-09-23	2024-05-26	2.53	2.67	1.34	2.6	0.007	0.93	0.0	0.05	15.60	0.01	2.392	3.48	0.88	1.7	98.3	0.0	0.95	0.58	0.90	4.78	2.6	0.006	0.60	0.0	0.05	16.77	0.01	2.433	3.48	1.47	2.4	97.6	0.0	1.15	0.84	0.53	0.92	4.48	3334	416	2	0	1	24	0	logfile
✔	8ZNE	60269	2024-09-23	2024-05-26	2.64	2.76	2.44	2.7	0.005	0.78	0.0	0.05	16.82	0.01	2.472	6.22	2.65	3.1	96.9	0.0	0.47	0.53	0.87	4.39	2.7	0.007	0.66	0.0	0.05	17.93	0.01	2.444	4.86	2.06	3.6	96.4	0.0	0.68	1.31	0.50	0.90	4.59	3312	417	2	0	1	9	0	logfile

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