Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8C91	16498	2024-09-26	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	22.46	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.005	0.68	0.0	0.04	23.84	0.01	1.984	23.33	0.00	9.2	90.7	0.1	-1.82	0.91	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile
✔	9EM7	19812	2024-09-25	2024-03-07	3.6	4.42	3.88	4.0	0.001	0.36	0.0	0.04	8.21	0.00	1.964	4.68	0.15	1.6	98.4	0.0	2.73	0.87	0.74	0.77	4.0	0.002	0.47	0.0	0.03	12.87	0.00	2.354	35.00	1.25	1.9	98.1	0.0	2.71	0.92	0.90	0.83	0.60	57048	6336	8	0	0	0	6176	logfile
✔	7TCP	25816	2024-09-27	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.005	0.56	0.0	0.04	13.07	0.00	2.214	4.68	2.73	4.0	96.0	0.0	2.25	0.27	0.71	0.83	2.45	14992	1912	12	0	12	0	0	logfile
✔	7R9E	24324	2024-09-24	2021-06-29	4.0	4.83	—	3.9	0.002	0.37	0.0	0.04	4.45	0.00	2.277	3.11	0.00	9.9	88.7	1.4	-3.58	0.87	0.80	—	3.9	0.003	0.63	0.0	0.04	9.41	0.00	2.404	7.64	0.00	6.0	94.0	0.0	-0.48	2.08	0.88	0.82	—	7726	505	1	0	0	0	3938	logfile
✔	8Ti9	41282	2024-09-26	2023-07-19	3.19	3.85	3.24	3.6	0.002	0.37	0.0	0.04	9.32	0.00	2.202	6.89	1.27	1.6	98.4	0.0	2.31	0.81	0.78	2.22	3.7	0.003	0.61	0.0	0.04	14.98	0.00	2.497	10.48	2.47	1.8	98.2	0.0	1.61	1.22	0.82	0.78	1.60	12492	1550	8	0	0	0	0	logfile
✔	7TJ2	25915	2024-09-27	2022-01-14	3.2	3.32	—	3.4	0.002	0.37	0.0	0.04	11.30	0.00	2.196	3.77	1.64	2.4	97.6	0.0	0.18	0.69	0.76	3.52	3.3	0.003	0.51	0.0	0.04	15.02	0.00	2.549	4.75	2.83	2.7	97.3	0.0	0.00	2.83	0.73	0.83	3.26	17083	2007	8	62	0	0	0	logfile
✔	8FPS	29369	2024-09-25	2023-01-05	2.38	1.99	2.31	2.3	0.002	0.37	0.0	0.03	16.27	0.00	2.215	3.41	1.01	1.2	98.8	0.0	4.11	0.61	0.84	3.13	2.3	0.002	0.43	0.0	0.03	16.45	0.00	2.548	3.22	0.55	0.9	99.1	0.0	4.15	0.26	0.61	0.85	3.68	10602	1338	20	0	4	152	0	logfile
✔	8FEJ	29029	2024-09-25	2022-12-06	4.64	5.33	4.68	4.6	0.001	0.37	0.0	0.04	13.97	0.00	2.030	6.27	4.30	2.9	96.9	0.2	0.48	0.88	0.69	—	4.6	0.002	0.56	0.0	0.04	12.58	0.00	2.425	7.92	0.00	6.2	93.6	0.2	-0.58	1.70	0.91	0.74	—	10464	1368	3	0	0	0	0	logfile
✔	6NEQ	9358	2024-09-27	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	17.57	0.00	1.949	3.29	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.005	0.74	0.0	0.04	19.82	0.00	2.015	11.28	2.57	6.4	93.6	0.0	-0.50	2.00	0.85	0.85	1.53	65776	5509	33	952	147	0	0	logfile
✔	8GKA	40181	2024-09-29	2023-03-17	2.55	2.76	2.62	2.8	0.001	0.38	0.0	0.03	13.14	0.00	2.291	7.21	0.54	3.2	96.8	0.0	0.61	0.63	0.78	3.74	2.8	0.003	0.62	0.0	0.04	17.39	0.00	2.337	7.91	1.71	5.0	95.0	0.0	1.08	1.60	0.64	0.82	3.40	21812	2500	8	0	34	0	0	logfile
✔	7R9o	24330	2024-09-24	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.61	0.0	0.04	11.30	0.00	2.416	6.47	0.74	2.8	97.2	0.0	-0.39	3.44	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	7Xo2	33334	2024-09-23	2022-04-30	3.0	2.83	2.60	2.9	0.001	0.38	0.0	0.05	18.12	0.00	2.586	6.10	0.00	5.0	95.0	0.0	-0.89	0.49	0.87	6.67	2.9	0.006	0.60	0.0	0.06	18.98	0.00	2.610	4.00	2.71	7.5	92.5	0.0	-1.67	1.11	0.51	0.89	6.36	2550	372	6	0	0	0	0	logfile
✔	9EM8	19813	2024-09-25	2024-03-07	4.1	4.53	4.13	4.3	0.002	0.38	0.0	0.03	9.41	0.00	1.973	6.95	0.44	1.8	98.2	0.0	1.61	0.80	0.62	—	4.3	0.002	0.48	0.0	0.03	12.38	0.00	2.165	44.49	0.00	3.4	96.6	0.0	1.90	3.24	0.86	0.75	—	57040	6336	8	0	0	0	6168	logfile
✔	8C92	16499	2024-09-24	2023-01-21	3.79	4.24	4.02	3.8	0.002	0.38	0.0	0.03	22.72	0.00	1.872	5.69	0.00	4.5	95.4	0.1	0.46	0.83	0.79	1.60	3.8	0.006	0.69	0.0	0.04	23.31	0.01	1.963	16.87	3.31	8.3	91.7	0.0	-1.28	0.58	0.85	0.84	1.86	53489	1700	17	1873	0	0	0	logfile
✔	7VF9	31948	2024-09-30	2021-09-10	4.04	4.13	—	4.1	0.001	0.38	0.0	0.04	9.65	0.00	2.176	3.71	0.05	1.5	98.5	0.0	-4.44	0.74	0.74	—	4.1	0.007	0.82	0.0	0.05	12.45	0.01	1.956	8.23	0.09	6.5	93.5	0.0	-1.41	2.38	0.78	0.79	—	24247	3425	7	0	3	0	0	logfile
✔	8VES	43173	2024-09-26	2023-12-20	3.22	3.49	3.36	3.5	0.003	0.38	0.0	0.03	13.07	0.00	2.158	4.47	0.00	1.4	98.6	0.0	2.34	0.76	0.85	1.92	3.5	0.003	0.50	0.0	0.03	16.32	0.00	2.552	5.28	1.01	1.5	98.5	0.0	3.20	1.60	0.73	0.83	1.37	14303	1714	9	19	0	2	0	logfile
✔	7R9M	24329	2024-09-24	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.17	0.00	2.482	4.79	0.25	2.2	97.8	0.0	-0.26	1.71	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	7TQV	26073	2024-09-28	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	10.87	0.00	2.162	5.00	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.003	0.57	0.0	0.04	14.67	0.00	2.131	6.95	2.29	3.4	96.6	0.0	-0.73	1.50	0.73	0.77	2.10	17792	2083	8	66	0	0	0	logfile
✔	7oNL	12997	2024-09-26	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	3.6	0.003	0.64	0.0	0.04	13.97	0.00	2.612	8.10	2.84	1.2	98.8	0.0	2.29	1.18	0.63	0.80	1.59	13923	1827	7	0	0	0	0	logfile
✔	8QHP	18415	2024-09-24	2023-09-08	2.8	3.49	2.82	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	3.3	0.003	0.50	0.0	0.04	14.96	0.00	2.377	5.65	1.12	1.1	98.9	0.0	2.41	0.85	0.74	0.84	3.48	6788	820	4	0	2	0	0	logfile

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