Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WX6	21951	2024-09-27	2020-05-09	2.0	2.11	2.08	2.1	0.006	0.69	0.0	0.04	14.94	0.00	2.277	0.00	0.00	1.2	98.8	0.0	1.60	0.77	0.88	7.70	2.1	0.003	0.50	0.0	0.03	16.37	0.00	2.359	1.96	0.69	1.2	98.8	0.0	4.93	0.59	0.79	0.90	7.23	68332	4128	56	0	8	2420	32664	logfile
✔	7N9Q	24259	2024-09-24	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	7QVF	14176	2024-09-24	2022-01-21	3.64	3.54	3.42	4.1	0.012	2.10	22.0	0.12	15.51	0.01	2.525	0.00	0.53	6.0	94.0	0.0	-2.41	0.43	0.77	3.90	3.6	0.005	0.88	0.0	0.06	16.75	0.00	2.575	14.75	4.10	7.1	92.9	0.0	-2.76	3.85	0.39	0.74	3.60	6516	810	6	0	0	0	0	logfile
✔	7JG6	22312	2024-09-28	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.004	0.91	0.0	0.00	6.00	0.00	2.539	0.24	0.00	11.6	88.4	0.0	-1.02	1.66	0.71	0.69	—	19320	4819	20	0	11	0	0	logfile
✘	7QL3	14062	2024-09-23	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3246	426	6	0	0	0	0	logfile
✔	7UXU	26862	2024-09-25	2022-05-06	2.74	3.09	2.80	3.1	0.007	1.01	0.0	0.06	17.35	0.01	2.519	0.00	0.00	1.9	98.1	0.0	-0.46	0.58	0.88	5.36	3.0	0.003	0.56	0.0	0.04	17.33	0.00	2.547	0.57	0.41	2.1	97.9	0.0	0.80	1.30	0.54	0.86	4.02	8776	536	8	0	4	0	4268	logfile
✔	7JG7	22313	2024-09-28	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	3.4	0.006	1.07	0.0	0.00	6.56	0.01	2.402	0.76	0.00	12.7	87.2	0.1	-1.22	1.63	0.73	0.71	—	19316	4818	20	0	11	0	0	logfile
✔	6CoZ	7545	2024-09-23	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.75	0.0	0.04	4.73	0.00	2.618	2.65	0.00	5.8	94.2	0.0	-0.93	1.54	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	7NCH	12266	2024-09-25	2021-01-28	3.84	3.76	3.69	3.8	0.013	1.61	2.0	0.10	14.68	0.00	2.485	0.00	0.19	9.4	90.6	0.0	-3.70	0.60	0.45	2.36	3.8	0.003	0.65	2.0	0.05	15.71	0.00	2.361	6.57	1.48	10.8	89.2	0.0	-3.88	1.64	0.63	0.51	2.62	11292	816	12	0	0	0	5796	logfile
✔	8SEH	40411	2024-09-23	2023-04-10	2.9	2.68	2.71	3.1	0.026	2.09	10.0	0.12	10.93	0.01	2.507	0.00	0.00	7.0	93.0	0.0	-2.29	0.52	0.80	4.20	3.0	0.005	0.75	0.0	0.05	17.15	0.00	2.585	7.39	4.38	6.8	93.2	0.0	-3.20	1.33	0.44	0.82	3.03	5570	730	10	0	0	0	0	logfile
✔	7QKW	14055	2024-09-23	2021-12-19	2.32	1.74	2.60	2.3	0.010	1.93	1.0	0.10	13.53	0.01	2.534	0.00	0.00	5.4	94.6	0.0	-2.79	0.41	0.81	7.02	2.3	0.002	0.53	0.0	0.05	16.41	0.00	2.586	1.91	1.81	5.1	94.9	0.0	-2.80	1.33	0.42	0.85	6.20	4707	306	6	0	0	0	2439	logfile
✔	9CHR	45599	2024-09-28	2024-07-01	3.5	3.52	3.44	3.6	0.013	1.70	0.0	0.09	11.42	0.02	2.557	0.00	0.00	2.2	97.8	0.0	-0.87	0.50	0.76	3.88	3.6	0.004	0.57	0.0	0.04	14.75	0.00	2.403	2.99	0.98	4.8	95.2	0.0	2.04	0.90	0.51	0.77	2.67	19104	1172	4	0	0	0	9596	logfile
✔	8Q8D	18251	2024-09-24	2023-08-18	3.04	2.88	2.87	3.0	0.011	1.85	2.0	0.08	13.26	0.01	2.504	0.00	0.00	2.9	97.1	0.0	-1.65	0.32	0.75	5.97	3.0	0.003	0.54	0.0	0.05	15.95	0.00	2.460	1.27	1.52	1.6	98.4	0.0	-1.25	1.52	0.40	0.87	5.74	7074	456	6	0	0	0	3606	logfile
✔	7QL0	14059	2024-09-24	2021-12-19	3.13	2.96	2.97	3.1	0.011	1.87	0.0	0.09	12.06	0.01	2.510	0.00	0.00	4.0	96.0	0.0	-2.04	0.39	0.77	6.02	3.1	0.002	0.57	0.0	0.05	14.49	0.00	2.497	3.45	1.39	1.0	99.0	0.0	-1.77	1.25	0.41	0.84	5.85	6390	414	6	0	0	0	3258	logfile
✔	7QKi	14043	2024-09-24	2021-12-17	3.13	3.29	3.04	3.2	0.011	1.99	3.0	0.10	9.18	0.01	2.508	0.00	0.00	10.1	89.9	0.0	-1.50	0.41	0.79	6.28	3.3	0.002	0.59	0.0	0.05	11.84	0.00	2.543	2.41	0.00	4.1	95.9	0.0	-1.94	0.73	0.39	0.80	5.14	7074	456	6	0	0	0	3606	logfile
✔	7QK3	14030	2024-09-23	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.75	0.0	0.05	16.56	0.00	2.540	2.19	1.28	2.8	97.2	0.0	-2.63	2.36	0.40	0.81	4.86	2742	183	3	0	0	0	1407	logfile
✔	8DG4	27407	2024-09-24	2022-06-23	3.12	3.38	3.17	3.4	0.013	1.93	24.0	0.10	13.65	0.01	2.537	0.00	0.15	3.9	96.0	0.1	-2.10	0.68	0.80	3.99	3.4	0.004	0.60	0.0	0.04	15.27	0.00	2.343	1.72	1.15	4.5	95.5	0.0	-1.41	0.44	0.65	0.79	2.91	52368	3488	8	0	0	0	25920	logfile
✔	7QK1	14028	2024-09-23	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.00	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.004	0.74	0.0	0.05	16.46	0.00	2.588	3.70	3.28	3.0	97.0	0.0	-1.65	2.23	0.42	0.84	4.21	3444	450	6	0	0	0	0	logfile
✔	7JSH	22454	2024-09-24	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.21	0.0	0.05	13.28	0.00	2.348	9.55	0.00	27.4	72.4	0.3	-5.22	6.13	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	8Q8C	18250	2024-09-24	2023-08-18	1.92	1.98	1.90	2.0	0.011	1.66	0.0	0.08	10.69	0.01	2.505	0.00	0.27	1.2	98.8	0.0	-1.44	0.21	0.65	7.52	1.9	0.002	0.52	0.0	0.05	15.47	0.00	2.540	0.60	0.54	1.7	98.3	0.0	-0.98	1.22	0.39	0.89	7.72	6618	429	6	0	0	0	3372	logfile

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