Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Z9F	11122	2024-09-29	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.004	0.72	0.0	0.04	15.17	0.01	2.247	3.34	3.02	1.8	98.2	0.0	4.53	0.91	0.84	0.86	8.47	41020	4152	72	0	32	4172	0	logfile
✔	8ACB	15345	2024-09-23	2022-07-05	2.6	2.88	1.65	2.9	0.004	0.71	0.0	0.08	15.24	0.00	2.257	7.47	0.00	7.8	92.2	0.0	-0.81	0.21	0.81	4.10	2.9	0.003	0.59	0.0	0.04	17.75	0.00	2.583	4.88	1.14	8.7	91.3	0.0	-0.52	1.22	0.20	0.84	3.54	1815	220	2	5	0	0	0	logfile
✔	7Xo3	33335	2024-09-23	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.6	0.003	0.55	0.0	0.05	16.00	0.00	2.641	1.32	1.52	10.4	89.6	0.0	-1.85	0.37	0.50	0.85	5.90	2598	378	6	0	0	0	0	logfile
✔	8EMQ	28259	2024-09-27	2022-09-28	1.66	1.59	1.68	1.6	0.011	1.31	0.0	0.07	15.25	0.01	0.733	5.98	1.91	0.6	99.4	0.0	2.37	0.66	0.78	9.05	1.6	0.004	0.67	0.0	0.04	14.73	0.01	2.110	3.28	0.64	1.8	98.2	0.0	5.21	0.42	0.82	0.89	8.89	37805	4128	72	0	30	2975	0	logfile
✔	7A5V	11657	2024-09-29	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.63	0.0	0.05	13.97	0.00	0.000	4.30	0.52	0.5	99.5	0.0	1.92	0.34	0.71	0.86	6.10	21155	2275	30	0	85	1015	0	logfile
✔	8H1T	34431	2024-09-27	2022-10-04	3.0	3.40	1.70	3.2	0.003	0.53	0.0	0.04	24.61	0.00	1.336	10.82	0.00	2.2	97.8	0.0	2.26	0.72	0.67	1.40	3.2	0.004	0.69	0.0	0.04	26.36	0.00	2.173	10.35	2.76	4.0	96.0	0.0	1.35	0.66	0.76	0.74	1.50	17365	1323	14	334	0	0	0	logfile
✔	8EN7	28269	2024-09-27	2022-09-28	1.68	1.48	1.71	1.6	0.012	1.29	0.0	0.07	15.67	0.01	0.731	8.76	1.27	1.2	98.8	0.0	2.40	0.61	0.75	8.54	1.6	0.003	0.62	0.0	0.04	15.47	0.00	2.591	3.15	1.24	1.2	98.8	0.0	4.88	0.39	0.75	0.85	7.98	37614	4128	54	0	6	2544	0	logfile
✔	6ZN2	11309	2024-09-25	2020-07-06	4.3	2.35	1.71	4.5	0.004	0.93	0.0	0.04	15.06	0.01	2.001	21.27	6.35	4.3	95.7	0.0	-1.42	0.74	0.77	—	4.5	0.004	0.86	0.0	0.05	14.60	0.01	2.061	17.43	0.00	4.9	95.1	0.0	-1.70	1.81	0.73	0.74	—	11320	1412	12	0	8	0	0	logfile
✔	6MST	9232	2024-09-23	2018-10-18	2.7	2.92	1.72	2.8	0.006	0.85	0.0	0.05	7.68	0.00	2.294	1.43	0.00	1.9	98.1	0.0	-4.58	0.73	0.90	7.42	2.9	0.005	0.56	0.0	0.04	15.81	0.00	2.613	5.21	2.19	2.9	97.1	0.0	-3.67	1.59	0.68	0.91	6.74	5172	648	12	0	0	0	0	logfile
✔	8GBR	29920	2024-09-23	2023-02-28	3.4	3.85	1.72	3.9	0.004	0.59	0.0	0.05	13.84	0.01	2.120	3.17	0.00	1.1	98.9	0.0	-2.35	0.56	0.83	4.22	4.0	0.005	0.78	0.0	0.05	14.29	0.00	2.537	6.34	4.30	7.9	92.1	0.0	-2.79	2.32	0.49	0.78	4.18	3630	465	5	0	0	0	0	logfile
✔	8P79	17522	2024-09-23	2023-05-30	1.7	1.76	1.73	1.8	0.014	1.73	0.0	0.08	14.30	0.01	2.251	3.34	0.90	2.1	97.7	0.2	-1.48	0.63	0.75	6.80	1.8	0.003	0.62	0.0	0.04	15.87	0.00	2.581	4.72	0.36	1.3	98.5	0.2	1.92	1.15	0.68	0.77	6.37	5256	630	6	0	1	180	0	logfile
✔	8oL3	16944	2024-09-23	2023-03-30	3.5	3.67	1.73	4.2	0.009	0.67	0.0	0.06	9.52	0.01	2.263	7.26	0.00	0.0	100.0	0.0	-0.18	0.42	0.77	3.49	4.2	0.002	0.46	0.0	0.06	16.12	0.00	2.592	10.69	2.00	7.7	92.3	0.0	-0.76	0.92	0.37	0.76	4.57	4970	330	10	0	0	0	2500	logfile
✔	7YK8	33890	2024-09-23	2022-07-22	2.8	2.62	1.74	2.8	0.005	0.66	0.0	0.06	11.56	0.00	2.465	18.20	0.00	8.5	91.5	0.0	-3.55	0.46	0.82	1.92	2.8	0.002	0.60	0.0	0.05	16.68	0.00	2.621	7.22	5.77	5.6	94.4	0.0	-2.79	1.14	0.43	0.81	2.65	3108	450	12	0	0	0	0	logfile
✔	7EFC	31083	2024-09-23	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.004	0.77	0.0	0.05	14.45	0.00	2.635	4.29	0.27	4.2	95.8	0.0	-0.32	0.47	0.80	0.85	6.72	4004	480	8	0	4	156	0	logfile
✔	7XJX	33236	2024-09-23	2022-04-18	2.7	2.78	1.76	2.9	0.008	0.81	0.0	0.06	12.77	0.00	2.438	12.63	0.00	16.4	83.6	0.0	-5.02	0.48	0.81	4.92	2.9	0.007	1.55	0.0	0.05	14.69	0.00	2.095	11.89	4.81	11.2	88.8	0.0	-3.39	1.15	0.45	0.81	4.85	2628	378	6	0	0	0	0	logfile
✔	8A4L	15148	2024-09-24	2022-06-12	2.68	2.73	1.77	2.8	0.004	0.65	0.0	0.05	13.43	0.00	2.385	10.11	0.00	0.0	100.0	0.0	-3.33	0.52	0.85	5.71	2.8	0.005	0.64	0.0	0.05	17.37	0.00	2.517	8.79	4.62	2.9	97.1	0.0	-3.64	1.16	0.53	0.87	5.67	7755	1125	15	0	0	0	0	logfile
✔	8Q98	18271	2024-09-24	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.51	0.0	0.05	13.42	0.00	2.608	1.42	0.51	1.1	98.9	0.0	-0.45	0.90	0.43	0.90	8.04	7032	450	6	0	0	0	3588	logfile
✔	6R4R	4727	2024-09-23	2019-03-23	3.4	3.01	1.77	3.8	0.008	1.43	0.0	0.08	10.87	0.01	2.308	6.73	0.00	12.0	88.0	0.0	-5.16	0.32	0.64	5.08	3.6	0.005	0.86	0.0	0.05	17.55	0.00	2.476	15.26	5.44	9.5	90.5	0.0	-4.50	1.41	0.32	0.67	3.85	4312	539	7	0	0	0	0	logfile
✔	8oVK	17218	2024-09-23	2023-04-26	2.88	3.04	1.81	3.2	0.012	1.80	0.0	0.11	14.99	0.01	2.386	4.35	12.90	5.3	94.7	0.0	-1.83	0.53	0.84	5.68	3.1	0.003	0.67	0.0	0.05	18.10	0.00	2.546	9.87	4.84	2.4	97.6	0.0	-3.00	0.65	0.53	0.85	5.87	3060	400	10	0	0	0	0	logfile
✔	8XBW	38231	2024-09-23	2023-12-07	2.89	5.59	1.82	5.3	0.006	1.06	0.0	0.05	23.74	0.01	1.155	13.10	0.00	0.8	99.2	0.0	-0.65	0.76	0.71	-0.50	5.3	0.005	1.27	0.0	0.06	23.55	0.00	2.473	27.75	2.48	3.4	96.6	0.0	-2.17	2.02	0.81	0.81	0.77	2671	242	5	36	0	0	0	logfile

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