Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EMQ	28259	2024-09-27	2022-09-28	1.66	1.59	1.68	1.6	0.011	1.31	0.0	0.07	15.25	0.01	0.733	5.98	1.91	0.6	99.4	0.0	2.37	0.66	0.78	9.05	1.6	0.004	0.67	0.0	0.04	14.73	0.01	2.110	3.28	0.64	1.8	98.2	0.0	5.21	0.42	0.82	0.89	8.89	37805	4128	72	0	30	2975	0	logfile
✔	8KFZ	37209	2024-09-24	2023-08-16	3.3	2.30	3.50	1.6	0.004	0.67	0.0	0.04	15.61	0.00	2.206	16.17	0.10	3.7	96.3	0.0	0.79	0.72	0.72	1.74	1.5	0.003	0.66	0.0	0.04	16.23	0.00	2.483	11.64	4.25	2.5	97.5	0.0	0.79	0.33	0.72	0.72	1.37	8966	1139	5	0	0	0	0	logfile
✔	7SEP	25074	2024-09-24	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	1.6	0.003	0.66	0.0	0.05	16.75	0.01	2.501	10.55	6.91	3.3	96.7	0.0	-0.23	1.29	0.72	0.71	2.18	7641	930	2	0	0	0	0	logfile
✔	8EN7	28269	2024-09-27	2022-09-28	1.68	1.48	1.71	1.6	0.012	1.29	0.0	0.07	15.67	0.01	0.731	8.76	1.27	1.2	98.8	0.0	2.40	0.61	0.75	8.54	1.6	0.003	0.62	0.0	0.04	15.47	0.00	2.591	3.15	1.24	1.2	98.8	0.0	4.88	0.39	0.75	0.85	7.98	37614	4128	54	0	6	2544	0	logfile
✔	7UAF	26423	2024-09-28	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.80	13.0	0.10	14.57	0.02	1.783	1.19	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.005	0.67	0.0	0.05	16.08	0.00	1.875	5.67	2.53	3.4	96.6	0.0	-0.14	1.19	0.83	0.83	4.28	17864	2131	22	0	58	0	0	logfile
✔	8XZH	38796	2024-09-24	2024-01-21	2.6	2.02	—	1.6	0.012	0.97	0.0	0.07	13.62	0.01	2.171	7.47	0.61	4.3	95.6	0.1	-1.34	0.77	0.83	5.30	1.8	0.003	0.58	0.0	0.04	16.37	0.00	2.457	5.52	2.24	2.5	97.5	0.0	1.14	0.48	0.77	0.85	4.08	9048	1159	6	0	0	0	0	logfile
✔	8J97	36090	2024-09-23	2023-05-02	3.2	2.37	3.18	1.6	0.007	0.92	1.0	0.05	13.20	0.01	2.266	9.42	0.28	5.8	94.2	0.0	-1.02	0.73	0.71	3.94	1.7	0.004	0.71	0.0	0.05	14.72	0.01	2.558	7.92	2.25	6.2	93.8	0.0	-0.44	0.43	0.73	0.71	2.78	3863	544	4	0	0	0	0	logfile
✔	8XPY	38563	2024-09-23	2024-01-04	3.63	3.53	3.62	1.6	0.004	0.79	0.0	0.05	29.42	0.00	2.217	10.44	4.39	10.1	89.9	0.0	-4.21	0.90	0.79	2.54	1.5	0.004	0.89	0.0	0.05	15.32	0.00	2.454	10.89	2.72	12.4	87.6	0.0	-2.28	2.13	0.91	0.83	2.01	4568	546	7	0	25	0	0	logfile
✔	7XJG	33226	2024-09-26	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	24.50	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.60	0.0	0.04	23.93	0.00	2.482	5.56	3.55	3.7	96.3	0.0	0.51	0.89	0.79	0.80	2.56	13167	1066	12	216	2	0	0	logfile
✔	8BPA	16147	2024-09-25	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.75	0.0	0.04	19.15	0.01	2.049	12.00	4.24	3.7	96.3	0.0	0.39	1.21	0.69	0.66	1.00	10393	1280	6	0	7	0	0	logfile
✔	7SiM	25144	2024-09-26	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.38	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.57	0.0	0.04	15.28	0.00	2.372	7.24	0.74	2.0	98.0	0.0	0.50	0.94	0.75	0.76	3.18	12826	1564	10	0	28	0	0	logfile
✔	7UWN	26837	2024-09-25	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.64	0.0	0.04	16.39	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.004	0.65	0.0	0.04	16.57	0.00	2.493	9.96	4.34	5.3	94.7	0.0	-1.03	0.31	0.66	0.63	0.78	10602	1325	12	0	11	0	0	logfile
✘	8RAS	19023	2024-09-25	2023-12-01	2.62	2.31	—	1.7	0.003	0.51	0.0	0.04	17.48	0.00	1.980	7.95	0.93	3.1	96.9	0.1	0.61	0.78	0.80	3.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	57315	6830	45	81	4	254	0	logfile
✔	8UDL	42150	2024-09-27	2023-09-28	2.37	1.99	2.45	1.7	0.003	0.74	0.0	0.05	15.49	0.01	2.257	2.17	0.39	3.8	96.1	0.1	-0.77	0.66	0.76	3.31	1.7	0.005	0.83	0.0	0.05	19.10	0.01	2.259	6.42	3.29	4.5	95.5	0.0	-0.04	2.69	0.67	0.78	2.46	15245	1783	5	46	0	0	0	logfile
✔	8SZF	40914	2024-09-26	2023-05-29	2.8	2.08	—	1.7	0.005	0.70	1.0	0.05	13.19	0.01	2.268	4.64	0.00	3.1	96.9	0.0	0.03	0.79	0.83	3.52	1.7	0.002	0.52	0.0	0.04	15.00	0.00	2.311	2.93	0.96	2.8	97.2	0.0	0.70	0.34	0.79	0.83	2.60	12813	1602	9	0	20	0	0	logfile
✔	8XZi	38797	2024-09-24	2024-01-21	2.7	1.98	—	1.7	0.021	1.72	2.0	0.09	9.40	0.01	1.226	1.67	0.20	2.2	97.6	0.2	1.22	0.73	0.82	4.38	1.6	0.003	0.65	0.0	0.04	14.94	0.00	2.484	6.25	1.73	3.4	96.6	0.0	1.16	1.09	0.75	0.85	3.24	9041	1149	6	0	1	0	0	logfile
✔	8AG4	15415	2024-09-25	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.6	0.003	0.53	0.0	0.04	15.63	0.00	2.552	4.31	0.95	3.6	96.4	0.0	0.78	0.31	0.81	0.83	3.74	11155	1384	4	0	0	0	0	logfile
✔	8FHK	29087	2024-09-28	2022-12-14	2.9	2.20	—	1.7	0.008	1.17	1.0	0.06	18.88	0.02	2.200	7.55	0.39	7.0	93.0	0.0	-1.60	0.73	0.68	1.79	1.7	0.003	0.63	0.0	0.04	18.05	0.01	1.801	10.59	1.64	7.9	92.1	0.0	-0.70	1.31	0.75	0.73	1.87	19947	1219	4	0	20	0	9827	logfile
✔	8GAV	29909	2024-09-28	2023-02-23	2.7	2.16	2.58	1.7	0.011	1.05	0.0	0.07	9.78	0.01	2.021	2.60	0.38	5.7	94.1	0.2	-3.07	0.81	0.82	5.61	1.6	0.004	0.71	0.0	0.05	14.14	0.00	2.528	3.16	2.65	4.7	95.3	0.0	-0.92	1.20	0.82	0.84	4.81	19088	2464	16	0	12	0	0	logfile
✔	8JRN	36599	2024-09-26	2023-06-17	2.6	2.12	2.69	1.7	0.004	0.51	0.0	0.04	17.31	0.00	1.840	9.52	0.26	1.7	98.3	0.0	0.37	0.80	0.80	2.85	1.7	0.003	0.57	0.0	0.04	18.06	0.00	2.489	6.83	2.09	1.6	98.4	0.0	1.27	0.50	0.80	0.81	2.95	13672	1660	6	0	4	0	0	logfile

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