Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	4V19	2787	2024-09-28	2014-09-25	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	69409	4361	42	1583	171	204	0	logfile
✔	3J89	6123	2024-09-24	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.54	0.0	0.03	20.35	0.01	2.195	6.54	4.51	1.0	99.0	0.0	2.98	1.37	0.81	0.79	0.60	9025	551	19	0	0	0	4598	logfile
✔	3J8A	6124	2024-09-27	2014-10-08	3.7	3.90	—	3.8	0.006	1.27	0.0	0.05	14.88	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.004	0.81	0.0	0.05	16.73	0.00	1.913	12.28	5.95	6.1	93.4	0.6	-2.09	0.49	0.71	0.83	1.68	15800	1835	12	0	280	0	0	logfile
✔	3J8i	6179	2024-09-27	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.17	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.90	0.0	0.04	14.22	0.01	2.124	12.48	0.00	12.3	87.1	0.5	-2.02	1.41	0.65	0.71	—	14800	1875	10	0	10	0	0	logfile
✔	3J94	6204	2024-09-29	2014-12-05	4.2	2.69	—	3.1	0.009	1.97	0.0	0.07	17.14	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.003	0.80	0.0	0.04	14.91	0.01	1.999	14.79	0.05	5.0	94.5	0.6	0.47	2.63	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile
✔	3J9C	6224	2024-09-29	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	7.02	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.005	0.62	0.0	0.05	16.40	0.00	2.125	6.44	3.92	3.1	96.9	0.0	-0.06	1.43	0.76	0.87	3.17	23296	2961	14	0	14	0	0	logfile
✔	3J9D	6239	2024-09-23	2015-01-09	3.3	2.70	—	3.4	0.027	2.04	0.0	0.08	20.57	0.01	2.034	23.66	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.84	0.0	0.04	17.95	0.00	2.320	14.54	6.01	7.4	92.2	0.4	-1.66	2.35	0.75	0.84	2.63	6086	746	2	0	1	0	0	logfile
✔	3J9E	6240	2024-09-23	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.003	0.74	0.0	0.04	17.95	0.00	2.522	8.15	3.89	7.6	91.5	1.0	0.82	1.24	0.74	0.85	2.95	4098	520	1	0	0	0	0	logfile
✔	5AEY	2850	2024-09-26	2015-01-12	4.3	4.01	—	4.0	0.011	1.71	35.0	0.11	22.05	0.01	2.197	7.01	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.004	0.79	0.0	0.05	15.95	0.00	2.502	12.20	0.00	9.5	90.5	0.0	-1.02	2.58	0.63	0.77	—	12675	1590	10	0	5	0	0	logfile
✔	3J9J	5778	2024-09-28	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.67	0.0	0.04	15.63	0.00	2.232	10.68	1.65	6.9	92.8	0.3	2.16	2.47	0.59	0.76	2.07	21068	1260	4	0	0	0	10624	logfile
✔	3J9P	6267	2024-09-27	2015-02-14	4.24	2.59	—	4.1	0.009	1.85	4.0	0.07	17.68	0.01	2.113	26.35	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.1	0.004	1.00	0.0	0.05	13.90	0.00	2.355	16.44	0.00	8.6	90.7	0.7	-1.91	1.18	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✘	3J9S	6272	2024-09-25	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9813	1191	6	0	15	315	0	logfile
✘	5AJ3	2913	2024-09-27	2015-02-20	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	66363	4665	49	1102	1006	118	0	logfile
✔	3J9X	6310	2024-09-27	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	14.92	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.45	3.8	0.004	0.78	0.0	0.04	17.29	0.01	2.258	17.58	1.79	2.4	97.6	0.0	1.69	1.17	0.63	0.79	2.00	70702	7424	60	696	0	0	0	logfile
✔	4Ui9	2924	2024-09-27	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.003	0.81	0.0	0.04	17.43	0.00	2.213	11.88	3.23	5.4	94.2	0.4	0.76	2.86	0.89	0.83	1.12	66453	8472	25	0	5	0	0	logfile
✔	4UiS	2974	2024-09-25	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-1.97	0.50	0.56	—	4.4	0.004	0.84	0.0	0.04	12.18	0.00	2.476	12.80	0.00	9.5	89.1	1.3	-1.94	1.66	0.55	0.74	—	8518	791	10	0	458	0	0	logfile
✘	5A2Q	3019	2024-09-30	2015-05-21	3.9	4.01	—	3.9	0.008	1.23	0.0	0.05	24.76	0.01	1.830	13.38	12.93	4.3	95.5	0.2	-3.44	0.89	0.88	1.18	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80749	4931	45	1922	115	144	0	logfile
✔	3JAC	6343	2024-09-27	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.07	13.28	0.01	2.047	64.31	0.00	24.4	74.1	1.6	-5.24	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	3JAF	6346	2024-09-26	2015-06-08	3.8	2.26	—	3.8	0.006	1.34	0.0	0.06	18.83	0.01	2.134	18.84	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.004	0.90	0.0	0.04	13.62	0.00	2.367	15.73	1.62	3.0	97.0	0.0	0.51	1.37	0.72	0.81	1.40	13865	1710	15	0	15	0	0	logfile
✔	3JAE	6345	2024-09-26	2015-06-08	3.9	2.88	—	3.5	0.006	1.26	0.0	0.05	9.72	0.01	2.038	13.69	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.89	0.0	0.05	13.97	0.00	2.548	12.28	1.22	2.6	97.4	0.0	0.32	0.85	0.72	0.82	1.74	12825	1690	10	0	10	0	0	logfile

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