Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8TZS	41768	2024-09-23	2023-08-27	3.84	4.01	3.90	4.0	0.005	0.87	0.0	0.05	15.83	0.01	2.170	9.05	0.24	3.6	96.4	0.0	0.65	0.65	0.77	1.99	4.0	0.003	0.72	0.0	0.04	16.71	0.00	2.536	9.43	5.91	4.2	95.8	0.0	1.58	0.96	0.66	0.77	1.31	3914	480	1	0	0	0	0	logfile
✔	8SZ4	40901	2024-09-23	2023-05-26	2.86	3.08	2.87	3.2	0.003	0.57	0.0	0.04	9.74	0.00	2.230	2.07	0.00	2.0	98.0	0.0	-0.45	0.18	0.26	2.84	3.1	0.003	0.64	0.0	0.04	13.62	0.00	2.493	3.68	1.26	2.8	97.2	0.0	1.66	2.06	0.43	0.67	0.96	4346	259	1	0	0	0	2184	logfile
✔	8SG4	40451	2024-09-26	2023-04-11	3.11	3.67	3.27	3.6	0.004	0.66	0.0	0.04	12.03	0.01	2.302	0.80	0.00	1.9	98.1	0.0	0.44	0.61	0.78	2.80	3.6	0.003	0.53	0.0	0.04	14.17	0.00	2.395	4.18	0.70	2.3	97.7	0.0	2.05	1.59	0.64	0.81	2.22	11715	1469	1	0	0	0	0	logfile
✔	8PQV	17825	2024-09-30	2023-07-12	4.0	3.78	3.91	3.6	0.005	0.88	0.0	0.05	18.62	0.01	2.216	5.82	0.53	3.0	96.9	0.1	-1.33	0.83	0.80	—	3.6	0.003	0.58	0.0	0.04	18.57	0.00	2.508	8.53	2.63	2.8	97.1	0.1	1.81	1.11	0.83	0.80	—	24122	2996	1	0	0	0	0	logfile
✔	8U3F	41860	2024-09-23	2023-09-07	3.31	3.63	3.18	3.6	0.005	0.62	0.0	0.04	12.99	0.01	2.265	6.58	0.00	2.1	97.9	0.0	-1.54	0.57	0.87	2.88	3.6	0.004	0.59	0.0	0.04	14.61	0.00	2.565	6.72	2.49	2.6	97.4	0.0	1.86	0.35	0.56	0.87	2.35	3410	437	1	0	0	0	0	logfile
✔	8TX1	41674	2024-09-26	2023-08-22	3.62	4.05	3.79	3.4	0.006	0.92	0.0	0.04	15.94	0.01	2.136	12.74	0.20	6.6	93.2	0.2	0.18	0.34	0.51	0.26	3.3	0.004	0.77	0.0	0.04	16.17	0.01	2.257	13.41	3.16	8.9	90.8	0.3	-1.16	1.48	0.35	0.56	0.75	13687	1894	1	0	0	0	0	logfile
✔	8SC1	40334	2024-09-23	2023-04-04	2.92	3.14	2.89	3.2	0.003	0.68	0.0	0.04	10.47	0.01	2.266	1.15	0.00	2.5	97.5	0.0	-0.78	0.58	0.81	2.42	3.2	0.002	0.56	0.0	0.03	13.85	0.00	2.555	2.45	2.16	1.1	98.9	0.0	2.62	1.98	0.60	0.82	1.11	3447	446	1	0	0	0	0	logfile
✔	8JGC	36230	2024-09-23	2023-05-20	3.44	3.77	3.05	3.8	0.008	1.05	0.0	0.07	15.17	0.01	2.251	23.58	4.35	9.0	90.0	1.0	-3.45	0.55	0.78	2.82	3.8	0.003	0.61	0.0	0.05	15.99	0.00	2.609	5.17	2.48	4.5	95.5	0.0	-0.08	1.31	0.54	0.79	2.63	1516	202	1	0	0	0	0	logfile
✔	8Wi3	37556	2024-09-25	2023-09-24	3.38	3.85	3.53	3.8	0.004	0.68	0.0	0.04	17.11	0.00	2.187	6.04	0.38	6.6	93.3	0.1	1.08	0.63	0.76	0.50	3.8	0.003	0.57	0.0	0.04	17.57	0.00	2.525	4.22	2.40	6.5	93.3	0.2	1.56	0.36	0.64	0.74	0.58	9489	1208	1	0	0	0	0	logfile
✔	8W77	37336	2024-09-23	2023-08-30	3.61	4.00	3.49	3.9	0.004	0.71	0.0	0.05	10.06	0.01	2.463	0.72	0.00	0.8	99.2	0.0	2.45	0.51	0.74	3.54	3.9	0.002	0.54	0.0	0.04	10.99	0.00	2.642	2.15	3.33	1.2	98.8	0.0	3.92	0.88	0.57	0.78	2.79	1601	260	1	0	0	0	0	logfile
✔	8X5X	38074	2024-09-23	2023-11-20	3.5	3.67	4.06	3.8	0.004	0.77	0.0	0.04	14.15	0.00	2.094	14.97	0.43	5.3	94.7	0.0	1.03	0.42	0.53	1.42	3.8	0.003	0.78	0.0	0.04	17.52	0.00	2.610	12.40	4.74	4.5	95.5	0.0	0.94	1.34	0.44	0.57	0.65	2105	256	1	0	0	0	0	logfile
✔	8U3E	41859	2024-09-23	2023-09-07	3.19	3.64	3.08	3.6	0.009	0.69	0.0	0.05	13.04	0.00	2.280	5.97	0.00	6.4	93.6	0.0	-3.53	0.54	0.83	4.61	3.6	0.003	0.59	0.0	0.04	14.78	0.01	2.625	3.73	1.14	3.5	96.5	0.0	1.21	0.40	0.51	0.85	3.12	3338	427	1	0	0	0	0	logfile
✔	8ERC	28552	2024-09-23	2022-10-11	3.7	3.47	3.08	3.7	0.003	0.67	0.0	0.04	12.91	0.00	2.115	8.25	0.00	2.3	97.7	0.0	1.99	0.51	0.65	1.22	3.7	0.003	0.71	0.0	0.04	16.47	0.00	2.599	9.53	2.49	2.3	97.7	0.0	2.20	0.52	0.52	0.65	0.70	3510	441	1	0	0	0	0	logfile
✔	8JY4	36719	2024-09-29	2023-07-02	3.58	4.95	3.68	4.2	0.003	0.55	0.0	0.04	15.96	0.00	1.980	6.92	0.00	3.0	96.9	0.1	-0.52	0.62	0.78	0.68	4.2	0.003	0.65	0.0	0.04	16.20	0.00	2.242	10.02	2.20	3.4	96.5	0.1	0.91	0.84	0.62	0.80	0.53	22246	1383	1	0	0	0	11252	logfile
✔	8PD5	17601	2024-09-24	2023-06-11	3.4	2.30	3.32	2.1	0.003	0.53	0.0	0.04	13.12	0.00	2.148	2.18	0.00	2.2	97.8	0.0	1.83	0.61	0.77	2.43	2.1	0.003	0.51	0.0	0.04	15.85	0.00	2.597	4.06	2.28	1.7	98.3	0.0	2.40	0.97	0.68	0.81	2.22	8093	1024	1	0	0	0	0	logfile
✔	8EDN	28037	2024-09-23	2022-09-05	3.8	3.47	3.75	3.3	0.002	0.58	0.0	0.04	11.31	0.00	2.205	6.81	0.46	5.7	94.1	0.2	2.77	0.65	0.60	0.13	3.3	0.003	0.63	0.0	0.04	13.94	0.00	2.509	7.58	1.84	4.3	95.5	0.2	2.35	1.13	0.70	0.72	1.96	3683	579	1	0	0	0	0	logfile
✔	8EDL	28035	2024-09-23	2022-09-05	3.7	3.30	3.60	3.1	0.002	0.52	0.0	0.03	11.07	0.00	2.307	6.09	0.00	2.1	97.7	0.3	2.83	0.62	0.61	-0.09	3.2	0.002	0.58	0.0	0.03	13.54	0.00	2.509	5.85	2.31	2.6	97.4	0.0	3.49	1.13	0.68	0.73	2.23	2470	395	1	0	0	0	0	logfile
✔	8XW4	38730	2024-09-23	2024-01-15	3.84	4.08	3.72	4.0	0.006	0.87	0.0	0.05	14.64	0.00	1.751	14.90	0.00	10.8	89.2	0.0	-0.84	0.54	0.78	1.09	4.1	0.003	0.78	0.0	0.04	16.95	0.00	2.517	10.76	3.81	8.0	92.0	0.0	0.17	0.57	0.54	0.77	0.82	5027	619	1	0	0	0	0	logfile
✔	8P51	17436	2024-09-26	2023-05-23	3.55	4.39	3.63	4.0	0.006	0.83	0.0	0.05	13.50	0.01	2.113	4.21	0.00	4.4	95.6	0.0	-1.93	0.82	0.71	2.07	4.0	0.003	0.69	0.0	0.04	14.93	0.00	2.526	6.09	0.98	2.7	97.2	0.1	1.16	1.70	0.88	0.85	1.44	12389	1574	1	0	0	0	0	logfile
✔	8XiU	38390	2024-09-23	2023-12-20	4.0	4.13	4.19	4.1	0.002	0.55	0.0	0.04	10.64	0.00	2.357	6.37	1.08	1.5	98.5	0.0	2.65	0.48	0.70	—	4.1	0.003	0.79	0.0	0.04	15.54	0.01	2.534	12.17	6.45	2.4	97.6	0.0	1.63	0.52	0.50	0.71	—	2615	348	1	0	0	0	0	logfile

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