Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A46	11629	2024-09-26	2020-08-19	3.0	3.95	2.87	3.7	0.007	0.61	0.0	0.04	12.01	0.00	2.225	4.56	5.95	2.4	97.6	0.0	-1.57	0.58	0.79	3.53	3.8	0.004	0.77	0.0	0.04	15.81	0.00	2.369	7.94	2.98	2.6	97.4	0.0	2.41	1.24	0.55	0.77	3.32	11501	1449	7	0	112	0	0	logfile
✔	7MiK	23854	2024-09-29	2021-04-17	3.12	3.08	—	3.2	0.010	1.47	0.0	0.05	20.36	0.01	2.170	4.32	0.53	4.1	95.9	0.0	-6.20	0.68	0.82	4.22	3.2	0.002	0.58	0.0	0.04	17.13	0.00	2.185	4.85	0.79	4.0	96.0	0.0	0.41	1.06	0.72	0.86	2.35	22728	2560	8	0	40	0	0	logfile
✔	7ZH6	14725	2024-09-23	2022-04-05	3.67	4.10	0.95	4.2	0.006	0.90	0.0	0.06	15.91	0.01	1.607	26.36	1.26	6.4	93.6	0.0	0.99	0.54	0.73	1.36	4.1	0.004	0.76	0.0	0.04	16.92	0.00	2.532	13.96	5.29	6.2	93.8	0.0	1.12	1.13	0.54	0.74	0.77	3771	478	2	0	1	0	0	logfile
✔	8ioC	35615	2024-09-24	2023-03-10	2.86	3.83	2.92	3.6	0.007	0.73	0.0	0.05	14.04	0.00	2.197	9.59	0.11	5.7	94.3	0.0	-0.98	0.68	0.77	2.67	3.6	0.004	0.88	0.0	0.04	16.51	0.00	2.384	12.16	2.44	4.1	95.9	0.0	0.22	1.35	0.63	0.78	1.88	8223	1041	7	0	1	0	0	logfile
✔	7TYT	26194	2024-09-29	2022-02-14	3.6	3.74	—	3.7	0.004	0.57	0.0	0.04	17.87	0.00	2.202	8.38	1.67	3.6	96.4	0.0	0.83	0.58	0.78	1.34	3.7	0.005	0.66	0.0	0.05	17.94	0.00	2.443	9.65	5.45	5.6	94.4	0.0	0.26	0.37	0.58	0.79	1.48	20349	2759	11	0	22	0	0	logfile
✔	6C26	7336	2024-09-27	2018-01-06	3.5	3.64	—	3.6	0.011	1.41	0.0	0.07	18.34	0.01	1.833	6.82	2.07	9.8	90.2	0.0	-4.59	0.67	0.80	3.65	3.6	0.004	0.73	0.0	0.05	16.41	0.00	2.386	4.91	4.09	6.7	93.3	0.0	-1.03	1.28	0.73	0.85	2.37	17188	2077	16	0	19	0	0	logfile
✔	6TTU	10585	2024-09-26	2019-12-30	3.7	3.87	3.69	3.8	0.006	0.88	0.0	0.05	15.10	0.00	1.312	13.58	0.29	9.3	90.7	0.0	-2.77	0.82	0.80	1.42	3.8	0.003	0.69	0.0	0.04	17.05	0.00	2.239	8.92	3.20	6.5	93.5	0.0	-0.14	1.63	0.82	0.81	1.44	12746	1604	9	0	3	0	0	logfile
✔	6P9Y	20278	2024-09-24	2019-06-10	3.01	3.22	2.89	3.2	0.005	0.68	0.0	0.05	12.48	0.00	2.246	9.17	0.81	3.0	97.0	0.0	-4.06	0.68	0.83	3.78	3.2	0.003	0.60	0.0	0.04	15.18	0.00	2.462	5.69	2.32	2.4	97.6	0.0	0.01	0.96	0.67	0.84	2.88	7994	998	6	0	0	0	0	logfile
✔	6QX7	4662	2024-09-30	2019-03-07	3.8	3.98	—	3.9	0.006	1.16	0.0	0.06	11.55	0.01	0.726	11.76	1.75	14.3	84.1	1.6	-4.94	0.63	0.59	1.19	3.9	0.005	0.92	0.0	0.05	17.21	0.01	2.475	19.99	3.11	15.7	83.9	0.4	-1.88	1.54	0.67	0.60	0.73	25164	3072	12	0	0	0	0	logfile
✔	6ZD0	11172	2024-09-24	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.77	0.0	0.04	5.49	0.00	2.602	5.29	0.00	15.7	84.1	0.2	-4.88	2.52	0.59	0.57	—	7962	1611	6	0	0	0	0	logfile
✘	6K0A	30036	2024-09-29	2019-05-05	4.6	4.81	—	4.5	0.003	0.70	0.0	0.04	22.49	0.01	2.316	2.94	0.83	5.3	94.7	0.0	-4.65	0.80	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22276	1364	14	516	2	0	0	logfile
✔	7R8D	24316	2024-09-24	2021-06-26	3.2	3.37	—	3.4	0.002	0.65	0.0	0.05	14.26	0.00	2.202	6.45	1.93	4.5	95.5	0.0	-1.18	0.61	0.83	1.57	3.3	0.004	0.62	0.0	0.04	15.28	0.00	2.592	6.56	4.08	4.5	95.5	0.0	0.67	0.91	0.63	0.87	2.02	8762	1090	4	0	8	0	0	logfile
✔	6SWY	10333	2024-09-27	2019-09-24	3.2	3.32	3.04	3.3	0.004	0.62	0.0	0.04	14.00	0.00	2.202	6.33	0.06	6.0	94.0	0.0	0.07	0.78	0.86	2.96	3.3	0.004	0.57	0.0	0.04	15.64	0.00	2.418	4.26	1.58	5.3	94.7	0.0	1.02	1.13	0.78	0.88	2.44	16057	1876	7	0	154	0	0	logfile
✔	7N4X	24180	2024-09-24	2021-06-04	3.33	3.49	—	3.5	0.014	1.76	0.0	0.21	15.86	0.01	2.134	5.53	1.23	7.5	92.5	0.0	-3.15	0.52	0.76	2.75	3.5	0.003	0.58	0.0	0.04	14.99	0.00	2.542	4.55	1.97	3.7	96.3	0.0	0.62	0.39	0.70	0.87	2.19	7647	953	5	0	13	0	0	logfile
✔	5YW8	6848	2024-09-24	2017-11-29	4.4	4.51	4.37	4.4	0.005	0.80	4.0	0.05	13.79	0.01	2.030	19.10	8.11	4.4	95.1	0.4	-2.46	0.64	0.70	—	4.3	0.005	0.77	0.0	0.04	13.12	0.00	2.466	14.20	0.00	4.6	95.3	0.1	0.56	3.92	0.66	0.76	—	50524	6520	16	0	8	0	0	logfile
✔	8AYH	15713	2024-09-28	2022-09-02	3.35	3.45	3.40	3.4	0.007	0.91	0.0	0.06	14.46	0.01	2.114	5.00	0.65	6.5	93.4	0.1	-4.12	0.83	0.85	2.90	3.4	0.003	0.60	0.0	0.05	16.00	0.00	2.091	6.94	2.89	4.8	95.2	0.0	-1.10	0.52	0.83	0.86	2.78	19109	2414	5	0	2	0	0	logfile
✔	8G4D	29717	2024-09-26	2023-02-09	3.6	3.83	3.76	3.7	0.003	0.68	0.0	0.04	15.33	0.00	2.213	10.57	0.64	6.3	93.7	0.0	0.05	0.69	0.73	2.01	3.7	0.003	0.66	0.0	0.04	17.09	0.00	2.472	8.75	1.47	4.9	95.0	0.1	0.61	0.50	0.68	0.73	1.75	14402	1795	7	0	2	0	0	logfile
✔	7oiU	12933	2024-09-26	2021-05-12	3.7	4.05	3.71	3.8	0.004	0.68	0.0	0.04	12.59	0.00	2.059	10.44	0.00	4.8	95.2	0.0	-0.19	0.73	0.77	2.53	3.8	0.003	0.61	0.0	0.04	14.71	0.00	2.495	8.33	2.45	4.9	95.1	0.0	0.10	0.38	0.73	0.77	2.02	12744	1683	6	0	0	0	0	logfile
✔	6TLJ	10516	2024-09-29	2019-12-02	3.8	4.18	—	4.0	0.008	0.89	0.0	0.04	15.17	0.00	2.042	21.71	0.18	8.5	91.2	0.2	-3.19	0.86	0.78	0.60	4.0	0.006	0.84	0.0	0.04	17.06	0.01	2.357	17.61	2.28	7.5	92.5	0.0	-0.21	2.01	0.86	0.78	0.60	72305	9200	23	0	0	0	0	logfile
✔	6HQE	0252	2024-09-24	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.005	0.83	0.0	0.04	12.09	0.01	2.495	18.08	0.00	4.4	95.6	0.0	1.46	0.97	0.65	0.85	—	9360	1196	52	0	0	0	0	logfile

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