Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i3U	35156	2024-09-23	2023-01-18	3.6	3.90	3.39	3.8	0.002	0.54	0.0	0.04	9.20	0.00	2.198	8.85	1.09	1.9	98.1	0.0	-0.52	0.64	0.75	3.16	3.8	0.003	0.64	0.0	0.04	15.09	0.01	2.548	10.95	1.36	3.5	96.5	0.0	-0.37	0.74	0.68	0.77	2.35	3408	437	4	0	1	0	0	logfile
✔	8iYD	35818	2024-09-24	2023-04-04	3.1	3.64	3.35	3.5	0.004	0.81	1.0	0.05	17.22	0.01	2.090	19.17	0.98	9.5	89.8	0.8	-2.30	0.73	0.77	2.04	3.5	0.004	0.69	0.0	0.05	17.33	0.01	2.390	11.16	5.75	6.8	92.8	0.4	-1.95	0.31	0.73	0.78	1.86	49344	6639	30	0	0	0	0	logfile
✔	7YFC	33785	2024-09-25	2022-07-08	3.0	3.40	3.05	3.4	0.005	0.66	0.0	0.04	18.01	0.00	2.198	5.98	0.09	2.5	97.5	0.0	1.05	0.65	0.82	3.01	3.4	0.002	0.54	0.0	0.04	18.03	0.00	2.487	4.75	4.04	2.7	97.3	0.0	1.06	1.28	0.68	0.85	2.94	9882	1262	7	0	2	0	0	logfile
✘	8G4o	29728	2024-09-28	2023-02-10	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17353	2094	20	0	39	0	0	logfile
✘	8T3Y	41016	2024-09-26	2023-06-08	3.47	3.65	3.22	3.4	0.004	0.64	0.0	0.04	26.54	0.00	2.284	6.78	1.74	2.8	97.2	0.0	-1.27	0.87	0.87	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13001	886	14	292	4	0	0	logfile
✔	8CAQ	16532	2024-09-23	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	2.7	0.008	0.72	0.0	0.05	14.17	0.00	2.529	2.05	0.30	2.5	97.5	0.0	-2.02	0.58	0.47	0.93	6.67	2870	375	5	0	0	0	0	logfile
✔	8SL1	40571	2024-09-24	2023-04-20	3.13	3.37	3.20	3.4	0.003	0.61	0.0	0.06	16.40	0.00	2.223	8.71	0.68	5.0	95.0	0.0	-0.41	0.64	0.73	2.11	3.4	0.003	0.59	0.0	0.04	16.74	0.00	2.273	7.85	2.59	4.9	95.1	0.0	0.07	0.36	0.63	0.73	2.20	6608	843	3	0	6	1	0	logfile
✘	8QHC	18407	2024-09-27	2023-09-07	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14829	1764	5	61	2	0	0	logfile
✔	8UV3	42604	2024-09-26	2023-11-02	2.72	2.82	2.64	2.8	0.010	1.06	0.0	0.06	14.69	0.01	1.851	5.72	0.39	8.0	91.8	0.2	-3.67	0.38	0.84	3.98	2.8	0.003	0.70	0.0	0.05	16.03	0.01	1.922	2.99	1.97	5.4	94.6	0.0	-1.62	0.36	0.37	0.77	3.22	12069	1534	9	0	3	276	0	logfile
✔	8CE4	16598	2024-09-26	2023-02-01	2.7	3.26	2.57	3.0	0.004	0.63	0.0	0.04	18.89	0.01	2.159	10.18	2.61	4.6	95.4	0.1	-0.84	0.89	0.90	4.88	3.0	0.003	0.68	0.0	0.04	17.91	0.00	2.492	9.19	1.76	5.7	94.3	0.0	-1.00	0.88	0.85	0.92	4.57	13435	1645	20	0	20	0	0	logfile
✔	8WY4	37915	2024-09-27	2023-10-30	2.81	2.99	2.90	3.0	0.006	1.06	0.0	0.06	15.32	0.01	2.368	2.51	0.00	4.3	95.7	0.0	-3.49	0.69	0.76	2.56	3.0	0.004	0.74	0.0	0.05	17.62	0.00	2.477	5.00	1.87	5.1	94.9	0.0	0.16	0.52	0.69	0.79	2.37	14864	1804	8	0	4	0	0	logfile
✔	8oVK	17218	2024-09-23	2023-04-26	2.88	3.04	1.81	3.2	0.012	1.80	0.0	0.11	14.99	0.01	2.386	4.35	12.90	5.3	94.7	0.0	-1.83	0.53	0.84	5.68	3.1	0.003	0.67	0.0	0.05	18.10	0.00	2.546	9.87	4.84	2.4	97.6	0.0	-3.00	0.65	0.53	0.85	5.87	3060	400	10	0	0	0	0	logfile
✔	8FHH	29085	2024-09-28	2022-12-14	3.09	3.34	3.16	3.3	0.006	0.83	0.0	0.05	12.51	0.01	2.292	4.45	0.19	1.8	98.2	0.0	-2.13	0.68	0.90	3.44	3.3	0.003	0.50	0.0	0.04	14.99	0.00	2.519	4.70	1.57	1.2	98.8	0.0	1.89	0.51	0.65	0.89	3.02	19824	2424	8	0	12	0	0	logfile
✔	8GUi	34274	2024-09-26	2022-09-12	2.81	3.24	2.87	3.1	0.004	0.58	0.0	0.04	27.52	0.00	2.109	9.47	0.13	2.6	97.4	0.0	1.95	0.86	0.86	3.13	3.1	0.005	0.64	0.0	0.04	28.29	0.00	2.144	9.96	2.48	3.8	96.2	0.0	2.08	0.35	0.87	0.88	2.52	13348	920	14	294	4	0	0	logfile
✔	8EKS	28212	2024-09-28	2022-09-21	3.1	3.47	3.18	3.5	0.003	0.62	0.0	0.04	13.55	0.00	2.215	3.64	0.00	1.9	98.1	0.0	-2.29	0.72	0.84	3.39	3.5	0.002	0.46	0.0	0.03	14.92	0.00	2.629	4.40	0.91	1.8	98.2	0.0	2.23	0.37	0.65	0.82	3.14	20484	2504	8	0	4	0	0	logfile
✔	8BLP	16112	2024-09-25	2022-11-10	2.6	2.86	2.66	2.9	0.010	1.37	0.0	0.05	19.49	0.01	2.208	7.09	0.35	4.8	95.2	0.0	-1.57	0.67	0.86	4.68	2.9	0.003	0.56	0.0	0.04	15.30	0.00	2.623	5.98	1.96	2.2	97.8	0.0	2.52	1.20	0.65	0.87	4.08	9378	1065	9	0	66	66	0	logfile
✔	8T05	40935	2024-09-23	2023-05-31	3.22	3.71	3.26	3.7	0.014	1.85	1.0	0.26	16.96	0.01	2.120	2.80	0.93	5.8	93.9	0.3	-2.10	0.45	0.74	3.17	3.6	0.004	0.63	0.0	0.04	16.40	0.01	2.036	6.28	1.68	4.5	95.5	0.0	1.16	1.55	0.58	0.84	2.54	5104	631	6	0	6	0	0	logfile
✔	8TCF	41153	2024-09-24	2023-06-30	2.9	3.25	2.96	3.2	0.014	1.40	0.0	0.09	12.16	0.01	1.804	0.72	0.41	3.7	96.2	0.1	0.27	0.75	0.76	3.61	3.1	0.003	0.66	0.0	0.05	14.98	0.00	1.939	6.06	2.03	3.4	96.4	0.1	0.30	0.76	0.73	0.80	3.13	7050	878	9	0	22	0	0	logfile
✘	8WJ0	37574	2024-09-26	2023-09-25	2.24	2.40	2.24	2.5	0.015	1.72	18.0	0.10	18.81	0.03	0.000	12.28	13.66	1.1	98.9	0.0	-1.94	0.57	0.71	3.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14370	1698	36	0	24	888	0	logfile
✔	8oFF	16859	2024-09-26	2023-03-15	3.4	3.63	3.35	3.7	0.007	0.63	0.0	0.04	27.07	0.01	2.106	5.35	6.72	8.7	91.3	0.0	-2.87	0.74	0.81	1.90	3.7	0.003	0.54	0.0	0.03	27.17	0.00	2.538	4.73	2.74	4.0	96.0	0.0	0.37	0.43	0.76	0.86	1.43	14424	1146	13	289	0	0	0	logfile

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