Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MR1	23953	2024-09-28	2021-05-07	4.2	4.74	—	4.6	0.003	0.78	0.0	0.05	14.91	0.01	2.237	5.74	0.00	5.5	94.5	0.0	-1.78	0.85	0.84	—	4.6	0.004	0.66	0.0	0.04	14.93	0.00	2.489	9.31	0.00	7.2	92.7	0.0	-0.67	0.34	0.85	0.84	—	18473	2316	3	0	0	0	0	logfile
✔	6DZM	8936	2024-09-26	2018-07-05	4.29	4.66	—	4.3	0.008	0.96	0.0	0.05	12.55	0.01	2.007	8.59	0.00	13.6	86.4	0.0	-4.76	0.77	0.80	—	4.3	0.004	0.76	0.0	0.04	11.95	0.00	2.354	12.25	0.00	9.1	90.9	0.0	-1.78	0.95	0.79	0.84	—	13584	1695	24	0	27	0	0	logfile
✔	7S1M	24805	2024-09-25	2021-09-02	2.41	2.95	2.09	2.8	0.003	0.51	0.0	0.04	13.54	0.00	2.233	4.89	0.10	1.9	98.1	0.0	1.84	0.81	0.87	3.93	2.8	0.004	0.56	0.0	0.04	15.93	0.00	2.479	3.45	1.36	1.8	98.2	0.0	1.54	0.91	0.77	0.87	3.84	9160	1168	7	0	1	0	0	logfile
✔	7EJ2	31149	2024-09-29	2021-04-01	3.3	3.53	—	3.4	0.009	0.94	0.0	0.06	16.55	0.01	2.290	7.49	0.19	4.8	95.1	0.1	-5.99	0.81	0.85	3.23	3.4	0.003	0.68	0.0	0.04	16.03	0.00	2.502	5.94	2.72	2.6	97.4	0.0	-1.16	0.56	0.84	0.87	2.74	20968	2728	12	0	4	0	0	logfile
✔	6V8X	21111	2024-09-30	2019-12-12	3.0	3.33	—	3.2	0.017	1.48	9.0	0.08	15.17	0.01	2.180	4.31	0.23	8.5	90.6	0.9	-3.90	0.82	0.77	2.66	3.2	0.004	0.89	0.0	0.05	14.46	0.01	2.411	10.39	2.36	7.6	92.1	0.3	-2.20	1.76	0.84	0.82	2.57	24825	2997	54	0	105	0	0	logfile
✔	7KF7	22845	2024-09-27	2020-10-13	2.8	3.09	—	3.1	0.004	0.67	0.0	0.04	15.43	0.01	1.869	6.68	0.04	4.9	95.1	0.0	-2.38	0.62	0.75	2.14	3.1	0.005	0.77	1.0	0.04	17.30	0.00	2.204	5.78	2.61	5.8	94.2	0.0	0.06	0.74	0.55	0.79	2.46	47906	3065	4	0	1	0	24324	logfile
✘	5GW4	9540	2024-09-27	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	6D7S	7824	2024-09-28	2018-04-25	4.34	4.44	—	4.3	0.007	1.16	0.0	0.06	11.86	0.01	2.248	7.14	1.17	12.1	87.8	0.2	-5.61	0.77	0.79	—	4.3	0.003	0.81	0.0	0.04	13.69	0.00	2.467	11.73	0.00	9.7	90.3	0.0	-1.21	1.40	0.77	0.80	—	19018	2372	4	0	0	0	0	logfile
✔	6PPL	20442	2024-09-24	2019-07-08	3.02	3.14	—	3.1	0.010	0.99	0.0	0.25	16.58	0.01	1.917	3.20	0.23	2.7	97.3	0.0	-6.00	0.74	0.86	4.10	3.1	0.005	0.68	0.0	0.05	16.97	0.00	2.414	4.62	1.50	2.4	97.6	0.0	-0.25	1.28	0.74	0.87	3.34	8155	980	6	0	4	0	0	logfile
✔	6KS7	0759	2024-09-26	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.72	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.003	0.69	0.0	0.04	12.03	0.00	2.360	12.58	0.04	3.1	96.8	0.1	0.04	1.82	0.74	0.68	—	62022	8131	16	0	0	0	0	logfile
✘	6PZA	20530	2024-09-25	2019-07-31	3.74	3.92	—	3.9	0.008	1.06	0.0	0.06	11.13	0.01	2.252	3.22	0.00	8.0	92.0	0.0	-4.29	0.51	0.50	0.87	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9659	1441	3	0	2	0	0	logfile
✔	8EXQ	28659	2024-09-25	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.68	0.0	0.04	12.72	0.00	2.446	13.67	0.00	4.7	95.3	0.0	-0.46	2.50	0.57	0.62	—	9304	1108	4	0	2	0	0	logfile
✔	6VX6	21431	2024-09-27	2020-02-21	3.0	3.24	—	3.2	0.005	0.82	0.0	0.05	14.09	0.00	2.260	4.77	0.94	1.9	98.1	0.0	-5.69	0.76	0.87	3.72	3.2	0.003	0.64	0.0	0.04	16.41	0.00	2.300	7.15	1.32	1.3	98.7	0.0	0.88	0.98	0.77	0.89	3.26	15061	1830	10	0	6	0	0	logfile
✔	7XDD	33144	2024-09-24	2022-03-26	2.93	2.56	2.92	3.0	0.005	0.72	0.0	0.05	14.36	0.00	2.204	6.52	2.03	2.4	97.6	0.0	0.32	0.79	0.85	3.21	2.9	0.003	0.61	0.0	0.04	16.20	0.00	2.506	5.69	2.54	1.9	98.1	0.0	1.75	0.81	0.80	0.87	2.66	9021	1123	2	0	0	0	0	logfile
✔	6DVZ	8921	2024-09-29	2018-06-25	4.24	4.48	—	4.4	0.008	1.27	0.0	0.06	12.69	0.01	2.265	5.74	0.18	16.6	82.6	0.8	-5.86	0.70	0.80	—	4.4	0.003	0.84	0.0	0.04	13.85	0.01	1.758	10.18	0.13	14.4	85.4	0.2	-1.97	0.92	0.70	0.79	—	20976	2572	8	0	12	0	0	logfile
✔	7Si3	25137	2024-09-26	2021-10-12	3.19	3.21	—	3.2	0.003	1.19	0.0	0.04	13.00	0.00	2.038	2.15	0.00	1.5	98.5	0.0	3.72	0.48	0.77	1.74	3.1	0.003	0.86	0.0	0.04	14.73	0.00	1.950	2.82	0.69	1.9	98.1	0.0	2.73	0.95	0.50	0.81	2.16	13500	873	2	0	2	0	6901	logfile
✔	7KFB	22848	2024-09-26	2020-10-13	3.9	3.46	—	3.4	0.022	1.85	3.0	0.12	13.13	0.01	2.017	1.66	0.22	1.3	98.2	0.6	0.66	0.69	0.82	3.59	3.4	0.005	0.81	0.0	0.05	14.34	0.00	2.451	8.56	3.61	3.3	96.4	0.4	-0.74	1.32	0.67	0.76	2.70	13458	1665	24	0	42	0	0	logfile
✔	7DSH	30833	2024-09-26	2020-12-31	3.67	3.52	—	3.6	0.007	1.08	1.0	0.06	12.54	0.01	2.099	6.74	0.46	9.5	90.4	0.1	-6.04	0.67	0.76	3.10	3.6	0.003	0.69	0.0	0.04	14.57	0.00	2.192	10.78	2.92	8.0	92.0	0.0	-2.75	0.58	0.68	0.77	2.04	12071	1500	4	0	5	0	0	logfile
✔	7M8L	23719	2024-09-28	2021-03-30	3.9	3.46	—	3.4	0.021	1.84	3.0	0.12	12.53	0.01	2.378	1.84	0.15	1.7	97.7	0.7	0.75	0.83	0.83	3.62	3.3	0.004	0.92	1.0	0.05	15.12	0.01	2.188	9.65	3.05	3.6	96.2	0.2	-0.62	1.67	0.82	0.79	2.86	18753	2349	30	0	42	0	0	logfile
✔	6PVQ	20497	2024-09-28	2019-07-21	4.75	4.68	—	4.6	0.008	1.32	0.0	0.06	13.01	0.01	2.244	9.74	1.15	14.4	85.2	0.4	-5.23	0.66	0.75	—	4.5	0.005	0.83	0.0	0.05	13.72	0.01	2.392	13.25	0.00	13.6	86.3	0.1	-2.41	1.06	0.68	0.78	—	17640	2160	4	0	0	0	0	logfile

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