Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MN6	23917	2024-09-25	2021-04-30	3.09	3.68	3.18	3.5	0.013	1.51	0.0	0.08	11.93	0.01	2.392	0.37	0.00	3.5	96.4	0.2	-0.15	0.85	0.85	3.26	3.5	0.003	0.63	0.0	0.05	13.64	0.00	2.524	3.40	0.38	3.8	96.1	0.1	0.22	1.39	0.84	0.86	3.12	9649	1227	8	0	13	0	0	logfile
✔	7Wi0	32517	2024-09-24	2022-01-01	3.82	4.11	—	4.1	0.008	1.05	0.0	0.06	14.37	0.01	2.265	6.66	0.40	8.6	91.3	0.1	-4.32	0.72	0.81	2.23	4.1	0.004	0.76	0.0	0.04	16.32	0.00	2.422	8.30	3.49	8.1	91.9	0.0	-2.24	1.84	0.70	0.81	1.87	6823	886	8	0	1	0	0	logfile
✔	7WL7	32576	2024-09-25	2022-01-12	3.51	3.41	—	3.5	0.002	0.50	0.0	0.04	8.84	0.00	2.214	5.97	3.39	4.6	95.3	0.1	-3.63	0.79	0.77	2.09	3.5	0.004	0.82	0.0	0.04	14.02	0.00	2.455	14.83	4.01	6.3	93.7	0.0	-0.05	0.84	0.79	0.79	1.92	10198	1330	2	0	0	0	0	logfile
✔	7V24	31636	2024-09-23	2021-08-07	3.29	3.50	—	3.4	0.006	0.80	0.0	0.05	13.64	0.00	2.164	12.03	0.24	11.3	88.7	0.0	-1.86	0.67	0.83	3.60	3.4	0.003	0.66	0.0	0.04	15.36	0.00	2.519	7.75	2.38	9.2	90.8	0.0	-0.97	0.38	0.65	0.83	3.68	3814	487	3	0	0	0	0	logfile
✘	7N3N	24141	2024-09-26	2021-06-01	3.33	3.58	3.42	3.5	0.005	0.83	1.0	0.05	13.63	0.01	1.756	10.48	0.22	5.3	94.7	0.0	-0.92	0.63	0.73	2.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13026	1663	4	0	2	0	0	logfile
✔	8DH7	27431	2024-09-24	2022-06-25	2.99	3.24	3.02	3.3	0.003	0.59	0.0	0.05	12.96	0.01	2.117	6.55	0.55	2.8	97.1	0.1	0.73	0.76	0.86	4.31	3.3	0.003	0.56	0.0	0.05	15.73	0.00	2.467	4.97	1.66	2.2	97.7	0.1	0.81	0.39	0.75	0.88	3.34	8274	1052	2	0	0	0	0	logfile
✔	6VWG	21415	2024-09-26	2020-02-19	3.21	3.61	—	3.5	0.007	0.89	0.0	0.05	14.65	0.01	1.873	4.30	1.26	11.4	88.6	0.0	-2.78	0.71	0.72	2.81	3.5	0.003	0.68	0.0	0.04	16.32	0.00	2.392	4.53	2.11	8.4	91.6	0.0	-2.49	1.38	0.72	0.74	2.72	12751	800	5	0	4	0	6282	logfile
✔	7Aio	11800	2024-09-26	2020-09-28	3.31	4.02	3.39	3.9	0.006	0.79	0.0	0.11	13.63	0.01	2.205	9.35	0.83	2.9	97.0	0.1	-1.55	0.68	0.75	1.72	3.9	0.003	0.70	0.0	0.05	15.11	0.00	2.557	9.64	2.22	3.4	96.5	0.1	0.95	0.71	0.65	0.80	1.20	13915	1819	6	0	8	0	0	logfile
✔	7RA8	24347	2024-09-30	2021-06-30	3.1	3.60	3.34	3.5	0.014	1.51	0.0	0.10	10.53	0.01	2.367	0.87	0.60	1.8	97.9	0.3	-0.04	0.72	0.74	3.47	3.5	0.003	0.61	0.0	0.05	12.57	0.00	2.552	4.02	1.11	1.7	98.2	0.1	0.24	1.61	0.69	0.76	3.30	24036	3405	24	0	54	0	0	logfile
✔	7TF9	25866	2024-09-24	2022-01-06	2.61	2.92	—	3.0	0.005	0.68	0.0	0.05	15.76	0.00	1.872	9.56	3.66	4.1	95.9	0.0	0.50	0.45	0.67	3.27	2.9	0.003	0.52	0.0	0.04	16.67	0.00	1.931	15.77	1.63	4.7	95.3	0.0	0.70	0.52	0.70	0.87	4.04	49868	6286	42	0	28	0	140	logfile
✔	7WB5	32395	2024-09-23	2021-12-15	3.7	3.89	—	3.9	0.011	1.41	0.0	0.09	21.95	0.02	2.188	18.30	14.00	18.2	79.6	2.2	-4.90	0.61	0.78	2.04	3.9	0.004	0.83	0.0	0.05	16.86	0.01	2.340	16.40	6.29	9.7	90.0	0.2	-3.55	1.64	0.62	0.77	2.05	3256	408	4	0	3	0	0	logfile
✔	6SD3	10147	2024-09-26	2019-07-26	3.3	3.67	—	3.2	0.008	0.84	19.0	0.04	13.90	0.01	0.390	14.32	1.24	10.8	88.5	0.7	-5.37	0.79	0.84	2.93	3.2	0.004	0.68	0.0	0.04	15.18	0.00	2.501	8.20	2.09	5.5	94.5	0.0	-0.76	0.67	0.80	0.86	2.58	63144	8212	34	0	0	0	0	logfile
✔	7UL7	26594	2024-09-30	2022-04-04	3.59	2.55	3.60	2.2	0.005	0.68	0.0	0.05	13.88	0.01	2.165	13.30	0.00	6.1	93.9	0.0	-1.00	0.70	0.66	2.12	2.1	0.004	0.72	0.0	0.05	15.71	0.00	2.419	11.32	3.77	6.3	93.7	0.0	-0.94	0.37	0.72	0.68	1.39	17439	2178	22	0	30	0	0	logfile
✔	7CUN	30473	2024-09-25	2020-08-23	3.5	3.56	—	3.4	0.002	0.64	2.0	0.05	10.98	0.00	1.905	6.88	0.00	6.7	92.6	0.7	-2.80	0.79	0.73	1.40	3.4	0.004	0.85	2.0	0.04	14.16	0.00	1.554	10.83	2.38	8.6	91.2	0.2	-0.52	1.25	0.79	0.74	1.69	57642	7839	14	0	307	0	0	logfile
✔	7WLE	32583	2024-09-25	2022-01-13	3.62	3.17	—	3.3	0.003	0.50	0.0	0.04	9.91	0.00	2.240	9.09	5.25	6.1	93.9	0.0	-3.62	0.78	0.75	1.67	3.4	0.005	1.02	0.0	0.05	14.86	0.00	2.354	16.21	3.65	5.2	94.8	0.0	-0.81	0.93	0.80	0.78	1.38	10188	1324	2	0	0	0	0	logfile
✔	7MGW	23830	2024-09-24	2021-04-13	3.5	3.79	—	4.0	0.003	0.64	0.0	0.04	13.53	0.00	2.292	9.19	1.40	2.9	97.1	0.0	-2.49	0.39	0.53	1.34	4.0	0.004	0.65	0.0	0.04	15.15	0.00	2.532	11.19	3.74	5.9	94.1	0.0	-0.93	1.00	0.59	0.76	1.38	6223	765	5	0	18	0	0	logfile
✔	8BCZ	15971	2024-09-24	2022-10-17	2.9	3.19	2.92	3.2	0.003	0.49	0.0	0.04	9.57	0.00	2.204	6.10	1.18	2.8	97.2	0.0	0.33	0.65	0.83	4.65	3.2	0.003	0.52	0.0	0.04	13.46	0.00	2.400	5.38	3.22	2.5	97.5	0.0	0.73	0.43	0.62	0.83	3.82	8505	1100	9	0	0	0	0	logfile
✔	7Q62	13850	2024-09-27	2021-11-05	3.18	3.86	3.24	3.6	0.006	1.13	0.0	0.07	14.48	0.01	2.276	4.86	0.06	4.7	95.2	0.1	-1.75	0.80	0.78	2.10	3.6	0.003	0.68	0.0	0.05	15.51	0.00	2.507	9.75	1.79	5.2	94.7	0.0	-0.32	0.45	0.81	0.81	2.26	16186	2045	4	0	10	0	0	logfile
✔	7LQW	23490	2024-09-30	2021-02-15	4.47	7.28	4.96	4.6	0.003	0.79	1.0	0.05	13.53	0.00	0.911	5.63	0.12	4.6	95.4	0.1	-1.27	0.78	0.64	—	4.7	0.012	0.88	0.0	0.05	13.09	0.01	2.298	25.97	0.08	9.1	90.8	0.0	-1.97	1.03	0.88	0.84	—	25332	3374	8	0	26	0	0	logfile
✔	8SZF	40914	2024-09-26	2023-05-29	2.8	2.08	—	1.7	0.005	0.70	1.0	0.05	13.19	0.01	2.268	4.64	0.00	3.1	96.9	0.0	0.03	0.79	0.83	3.52	1.7	0.002	0.52	0.0	0.04	15.00	0.00	2.311	2.93	0.96	2.8	97.2	0.0	0.70	0.34	0.79	0.83	2.60	12813	1602	9	0	20	0	0	logfile

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