Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YAE	10747	2024-09-26	2020-03-12	3.9	4.10	4.00	4.1	0.009	0.82	0.0	0.05	14.19	0.00	2.093	17.68	0.13	9.3	90.5	0.2	-3.34	0.77	0.85	1.78	4.1	0.003	0.73	0.0	0.04	16.44	0.00	2.410	9.74	1.90	4.3	95.7	0.1	0.46	1.26	0.75	0.83	1.03	13707	1717	4	0	0	0	0	logfile
✔	6JXA	9892	2024-09-26	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.006	1.12	0.0	0.05	11.68	0.01	2.387	23.91	0.00	16.8	80.2	2.9	-2.98	0.96	0.65	0.60	—	14100	2244	1	0	0	0	0	logfile
✔	7YPQ	34011	2024-09-23	2022-08-04	3.1	3.22	2.15	3.2	0.005	0.63	0.0	0.05	17.79	0.00	2.261	7.93	0.00	2.2	97.8	0.0	-0.66	0.52	0.79	2.67	3.2	0.005	0.59	0.0	0.04	19.36	0.00	2.537	7.57	1.61	2.2	97.8	0.0	0.11	0.31	0.52	0.80	2.26	2915	327	2	11	0	0	0	logfile
✔	7SUN	25442	2024-09-25	2021-11-17	3.6	3.21	—	3.4	0.003	0.69	0.0	0.05	13.91	0.00	2.279	7.34	0.00	3.6	96.4	0.0	0.67	0.63	0.78	2.16	3.4	0.003	0.60	0.0	0.04	16.17	0.00	2.539	10.26	2.43	4.7	95.3	0.0	1.44	0.40	0.64	0.80	1.84	10454	1350	2	0	0	0	0	logfile
✔	7YoJ	33983	2024-09-25	2022-08-01	3.36	3.79	3.58	3.7	0.005	0.87	0.0	0.05	24.11	0.01	2.304	7.98	2.19	5.9	93.6	0.5	-2.03	0.77	0.77	1.75	3.6	0.003	0.63	0.0	0.03	23.71	0.00	2.334	10.28	2.46	4.2	95.8	0.0	0.32	1.01	0.78	0.81	1.84	11545	867	4	216	0	0	0	logfile
✔	7XEo	33157	2024-09-28	2022-03-31	2.89	3.27	3.13	3.3	0.003	0.70	4.0	0.05	12.94	0.00	2.214	13.56	0.74	4.3	94.7	1.0	0.03	0.75	0.82	2.38	3.2	0.003	0.65	0.0	0.04	15.71	0.00	2.472	7.90	2.53	5.3	94.4	0.3	1.22	0.46	0.75	0.84	2.38	19980	2456	4	0	0	0	0	logfile
✔	7WVZ	32863	2024-09-24	2022-02-12	3.38	3.15	3.39	3.4	0.012	1.77	5.0	0.09	12.99	0.02	2.526	0.04	1.38	4.3	95.5	0.1	-0.87	0.60	0.69	2.71	3.4	0.003	0.61	0.0	0.04	14.53	0.01	2.353	3.33	1.09	2.9	97.1	0.0	0.14	1.38	0.69	0.81	2.37	49889	3430	2	0	0	0	24824	logfile
✔	8DWV	27761	2024-09-27	2022-08-02	3.6	4.99	3.80	3.6	0.004	0.74	4.0	0.05	14.51	0.00	2.076	6.82	0.28	8.8	90.6	0.6	-1.14	0.69	0.46	1.16	3.7	0.006	0.89	0.0	0.05	16.20	0.00	2.498	24.31	1.16	10.7	88.9	0.4	-1.55	2.24	0.89	0.82	0.77	16480	2084	6	0	0	0	0	logfile
✔	6SE0	10151	2024-09-26	2019-07-29	3.8	4.73	—	4.6	0.009	1.01	0.0	0.06	28.08	0.01	2.248	4.43	0.00	0.9	99.1	0.0	-2.82	0.80	0.78	0.85	4.6	0.004	0.66	0.0	0.03	28.12	0.00	2.087	12.70	3.83	1.7	98.3	0.0	0.92	0.65	0.80	0.78	0.60	12002	765	10	290	0	0	0	logfile
✔	6oS9	20180	2024-09-25	2019-05-01	3.0	3.41	—	3.4	0.010	1.08	0.0	0.06	10.14	0.01	2.240	5.39	0.21	4.9	95.1	0.0	-2.70	0.67	0.82	3.39	3.4	0.003	0.73	0.0	0.04	15.38	0.00	2.427	9.36	2.17	2.8	97.2	0.0	0.49	0.76	0.64	0.81	2.57	8969	1152	6	0	0	0	0	logfile
✔	6M4H	30078	2024-09-25	2020-03-07	3.9	4.39	—	3.9	0.008	0.89	0.0	0.05	29.22	0.01	1.729	27.61	2.85	3.1	96.7	0.2	-6.02	0.82	0.76	1.36	4.0	0.006	0.81	0.0	0.04	29.78	0.00	2.051	16.58	2.31	3.1	96.9	0.0	0.78	1.74	0.87	0.84	0.92	9420	656	10	206	0	0	0	logfile
✔	6VXP	21447	2024-09-27	2020-02-22	3.39	4.13	—	3.9	0.008	1.13	14.0	0.07	11.36	0.01	2.226	6.82	0.00	4.1	95.9	0.0	-2.30	0.74	0.80	2.28	3.9	0.005	0.70	0.0	0.04	13.69	0.00	2.572	5.49	1.67	2.4	97.6	0.0	2.66	1.77	0.76	0.86	2.14	14819	1939	7	0	0	0	0	logfile
✔	6XSS	22305	2024-09-24	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.78	0.0	0.04	17.10	0.00	2.470	16.13	2.06	0.9	99.1	0.0	2.42	1.28	0.74	0.79	0.62	8048	1040	4	0	0	0	0	logfile
✔	6V6D	21071	2024-09-26	2019-12-05	3.77	3.87	—	3.8	0.005	0.95	0.0	0.06	13.31	0.01	2.030	6.03	0.00	2.0	98.0	0.0	-2.17	0.63	0.85	3.10	3.8	0.003	0.69	0.0	0.04	16.24	0.00	2.480	5.53	2.72	2.4	97.6	0.0	1.44	0.65	0.63	0.85	2.94	11739	1463	7	0	0	0	0	logfile
✔	7WJU	32548	2024-09-24	2022-01-07	2.69	2.82	—	2.8	0.007	0.99	0.0	0.07	21.91	0.01	2.325	3.53	0.00	5.3	94.5	0.2	-2.47	0.72	0.81	3.88	2.9	0.004	0.62	0.0	0.04	22.32	0.00	2.259	4.79	1.88	4.5	95.5	0.0	0.51	1.16	0.70	0.84	3.33	8322	607	5	158	0	0	0	logfile
✔	6PX1	20516	2024-09-25	2019-07-24	3.3	3.48	—	3.4	0.006	0.87	0.0	0.05	28.55	0.01	2.228	2.28	0.00	1.9	98.1	0.0	-2.98	0.79	0.83	3.70	3.4	0.003	0.58	0.0	0.03	28.18	0.00	2.453	7.25	1.11	1.5	98.5	0.0	2.60	1.13	0.80	0.84	2.48	11937	752	10	290	0	0	0	logfile
✔	7X13	32933	2024-09-29	2022-02-23	3.7	3.38	—	3.3	0.002	0.51	0.0	0.04	14.42	0.00	2.152	8.27	0.04	1.7	98.3	0.0	2.42	0.50	0.55	1.11	3.3	0.004	0.67	0.0	0.04	16.31	0.00	2.406	11.07	3.39	3.6	96.4	0.0	1.21	1.01	0.53	0.61	1.21	21248	2668	12	0	0	0	0	logfile
✔	7K78	22696	2024-09-26	2020-09-22	3.1	3.20	—	3.2	0.004	0.69	0.0	0.04	27.11	0.01	2.149	8.43	0.20	2.7	97.3	0.0	0.24	0.73	0.85	2.54	3.2	0.003	0.58	0.0	0.03	26.33	0.00	2.166	6.72	2.07	3.2	96.8	0.0	1.82	0.35	0.69	0.85	2.39	14125	1198	12	232	0	0	0	logfile
✔	7DLU	30713	2024-09-26	2020-11-30	2.5	2.99	2.55	2.9	0.004	0.72	0.0	0.05	15.05	0.01	1.627	10.53	6.73	6.6	92.6	0.8	-1.31	0.67	0.83	2.63	2.9	0.003	0.64	0.0	0.04	16.38	0.00	2.348	5.45	2.95	6.4	92.9	0.8	1.51	0.41	0.69	0.84	2.32	13727	1820	7	0	0	0	0	logfile
✔	7SYD	25522	2024-09-28	2021-11-24	3.1	3.98	—	3.4	0.007	0.79	2.0	0.05	14.22	0.00	2.068	8.34	1.99	10.4	89.4	0.2	-3.66	0.88	0.83	2.90	3.4	0.003	0.63	0.0	0.04	14.62	0.00	2.342	5.25	0.95	5.9	94.1	0.0	-1.00	2.47	0.91	0.88	2.53	10216	1322	4	0	0	0	0	logfile

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