Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BZW	30261	2024-09-25	2020-04-28	4.6	7.66	4.73	6.0	0.003	0.82	0.0	0.05	15.82	0.01	2.176	28.88	0.00	19.4	80.6	0.0	-5.59	0.85	0.67	—	6.5	0.004	0.92	0.0	0.06	14.76	0.01	2.615	16.98	0.00	14.1	85.9	0.0	-2.90	2.05	0.93	0.85	—	9756	1212	12	0	0	0	0	logfile
✔	7TTU	26124	2024-09-30	2022-02-01	3.0	2.90	—	3.1	0.002	0.46	0.0	0.03	22.58	0.00	2.175	4.25	0.00	3.6	96.4	0.0	-1.25	0.62	0.66	1.12	3.0	0.003	0.62	0.0	0.04	23.01	0.00	2.295	4.13	3.73	4.7	95.3	0.0	-1.75	0.85	0.75	0.87	2.53	80724	2661	27	2795	0	0	0	logfile
✔	7TTW	26125	2024-09-30	2022-02-02	2.9	2.35	2.83	2.8	0.003	0.54	0.0	0.03	22.87	0.00	2.065	3.74	0.04	4.3	95.7	0.0	-2.03	0.71	0.80	3.36	2.8	0.004	0.71	0.0	0.04	23.04	0.01	2.152	3.47	3.82	5.4	94.6	0.0	-2.01	0.25	0.73	0.86	3.00	80853	2661	27	2801	0	0	0	logfile
✔	6NPJ	0471	2024-09-23	2019-01-17	3.8	3.73	—	3.7	0.008	1.24	0.0	0.07	17.12	0.01	2.246	7.07	6.25	8.8	91.2	0.0	-5.64	0.62	0.77	2.47	3.7	0.003	0.68	0.0	0.04	17.55	0.00	2.572	7.79	2.98	6.6	93.4	0.0	-2.07	1.34	0.63	0.78	2.57	6186	768	2	0	0	0	0	logfile
✔	6T2U	10369	2024-09-29	2019-10-09	3.6	4.08	—	3.6	0.002	0.48	1.0	0.04	13.11	0.01	2.211	4.80	2.98	2.0	98.0	0.0	-3.59	0.85	0.71	0.66	3.6	0.004	0.68	0.0	0.04	15.88	0.00	2.511	10.24	2.61	4.4	95.6	0.0	0.66	3.51	0.87	0.77	0.85	23826	2847	4	54	0	0	0	logfile
✔	6R9B	4769	2024-09-30	2019-04-03	3.8	3.76	—	3.6	0.003	0.88	1.0	0.06	9.76	0.01	2.296	4.54	0.70	8.0	91.8	0.2	-4.57	0.63	0.51	0.46	3.6	0.003	0.85	0.0	0.05	15.34	0.00	2.260	12.03	1.87	8.1	91.8	0.1	-2.06	1.93	0.69	0.60	0.92	25880	3401	7	0	0	0	0	logfile
✔	7N9Y	24264	2024-09-24	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	6VQW	21359	2024-09-28	2020-02-06	3.42	4.18	—	4.0	0.010	0.94	0.0	0.06	16.44	0.01	2.245	7.87	0.57	13.1	86.9	0.0	-5.04	0.78	0.79	1.92	4.0	0.005	0.65	0.0	0.04	17.15	0.00	2.474	9.21	3.96	9.9	90.1	0.0	-2.45	0.40	0.77	0.78	1.50	20479	2648	11	40	0	0	0	logfile
✔	6oKR	20102	2024-09-28	2019-04-15	4.2	4.37	—	4.3	0.007	1.04	0.0	0.06	15.82	0.01	2.262	9.48	0.58	15.3	84.7	0.0	-5.16	0.69	0.83	—	4.4	0.004	0.78	0.0	0.05	14.55	0.00	2.343	11.54	0.19	13.6	86.4	0.0	-3.40	0.48	0.69	0.82	—	18613	2394	7	0	0	0	0	logfile
✔	6oF4	20042	2024-09-25	2019-03-28	3.2	2.71	—	3.6	0.010	1.19	0.0	0.06	15.12	0.01	2.091	11.76	2.54	19.6	76.8	3.5	-4.99	0.79	0.82	1.96	3.7	0.003	0.77	0.0	0.04	16.56	0.01	2.414	5.93	3.05	8.5	91.4	0.1	0.37	1.29	0.78	0.81	1.81	10998	1422	4	0	0	0	0	logfile
✔	7SWN	25476	2024-09-23	2021-11-20	4.3	3.77	—	3.5	0.007	1.06	0.0	0.06	14.58	0.01	2.203	41.73	0.00	21.9	78.1	0.0	-4.82	0.57	0.68	—	3.5	0.003	0.86	0.0	0.05	13.92	0.01	2.525	18.40	0.28	10.8	89.2	0.0	-3.22	2.76	0.57	0.68	—	3283	422	3	0	0	0	0	logfile
✔	6LR0	31583	2024-09-25	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.76	0.0	0.04	15.74	0.00	2.514	7.80	1.95	6.5	93.5	0.0	-3.66	0.83	0.64	0.75	1.10	9576	1230	1	0	0	0	0	logfile
✘	7F73	31484	2024-09-23	2021-06-27	4.0	4.29	3.95	4.3	0.007	1.07	0.0	0.06	15.26	0.00	2.247	11.96	4.10	3.1	96.9	0.0	0.17	0.57	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4934	586	2	0	0	0	0	logfile
✔	7oTi	13060	2024-09-24	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.81	0.0	0.04	14.41	0.00	2.422	13.39	0.00	6.3	93.3	0.4	-1.23	1.71	0.51	0.49	—	9171	1182	1	0	0	0	0	logfile
✔	7DGD	30671	2024-09-26	2020-11-11	3.96	4.40	—	4.2	0.015	2.08	10.0	0.12	15.16	0.01	1.930	4.79	3.87	9.2	89.9	0.9	-4.26	0.61	0.53	0.38	4.2	0.005	0.90	0.0	0.05	16.44	0.00	2.473	17.00	2.99	10.6	89.3	0.1	-2.11	1.89	0.68	0.66	0.49	12381	1572	2	0	0	0	0	logfile
✔	7X6o	33024	2024-09-29	2022-03-07	3.5	2.65	—	3.8	0.002	0.49	0.0	0.04	8.09	0.00	2.283	3.17	1.82	2.0	98.0	0.0	-3.07	0.60	0.53	0.73	2.1	0.005	0.82	0.0	0.05	12.65	0.00	2.375	17.10	2.24	4.9	95.1	0.0	-1.15	1.57	0.64	0.59	1.16	21609	2787	12	0	0	0	0	logfile
✔	7oS1	13045	2024-09-26	2021-06-07	3.3	3.92	—	3.6	0.005	0.60	0.0	0.04	12.08	0.00	2.229	10.23	0.96	2.8	97.2	0.0	0.53	0.90	0.86	2.53	3.6	0.003	0.63	0.0	0.04	14.65	0.00	2.489	8.39	1.41	2.8	97.2	0.0	0.87	1.33	0.89	0.86	2.35	14054	1746	2	0	0	0	0	logfile
✔	6QPi	4614	2024-09-23	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.43	0.0	0.04	4.24	0.00	2.636	0.89	0.00	2.6	97.4	0.0	2.50	0.60	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	8DWU	27760	2024-09-28	2022-08-02	3.4	4.26	3.39	3.3	0.005	1.26	5.0	0.06	14.46	0.01	2.223	5.38	0.14	7.2	92.3	0.5	-1.91	0.71	0.59	1.60	3.3	0.004	0.90	0.0	0.05	15.91	0.00	2.429	14.91	1.12	8.1	91.6	0.3	-1.30	1.55	0.88	0.86	1.65	19690	2506	13	0	0	8	0	logfile
✘	6XZD	10659	2024-09-27	2020-02-04	3.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-3.86	—	—	2.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63749	3919	7	20	0	0	31961	logfile

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