Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RTT	24688	2024-09-24	2021-08-15	3.5	3.91	—	3.9	0.003	0.63	0.0	0.04	20.57	0.00	2.239	5.02	0.00	3.6	96.4	0.0	2.65	0.60	0.73	1.03	3.9	0.002	0.55	0.0	0.03	15.50	0.00	2.374	5.10	0.75	4.1	95.9	0.0	3.98	1.65	0.60	0.73	0.21	6268	791	8	0	14	0	0	logfile
✔	6CNB	7530	2024-09-23	2018-03-08	4.1	4.34	—	4.2	0.007	1.15	2.0	0.06	14.17	0.01	1.836	32.34	0.60	17.4	81.2	1.4	-5.08	0.73	0.68	—	4.2	0.006	0.92	0.0	0.05	15.42	0.01	1.993	17.67	0.00	12.6	86.3	1.0	-2.42	1.47	0.83	0.82	—	47837	5695	28	112	69	0	0	logfile
✔	8E3Q	27870	2024-09-26	2022-08-17	2.68	2.93	2.73	2.9	0.003	0.57	0.0	0.04	13.14	0.00	2.219	8.89	0.14	4.7	95.0	0.3	-0.58	0.74	0.84	4.68	2.9	0.002	0.58	0.0	0.04	16.23	0.00	2.583	7.39	1.36	4.7	95.2	0.1	-0.58	0.36	0.74	0.86	4.22	12739	1603	4	0	1	0	0	logfile
✔	6V4o	21043	2024-09-30	2019-11-28	2.8	3.15	—	3.1	0.011	0.81	0.0	0.08	15.49	0.00	1.602	7.76	2.95	9.9	90.1	0.0	-4.27	0.80	0.84	3.13	3.1	0.005	0.72	0.0	0.04	16.03	0.00	2.288	7.60	2.03	5.0	95.0	0.0	-1.53	0.59	0.79	0.86	3.69	24796	3204	20	0	16	0	0	logfile
✔	7QB9	13882	2024-09-23	2021-11-18	3.1	3.36	3.16	3.4	0.008	1.01	0.0	0.06	12.61	0.01	2.291	2.92	0.00	3.5	96.5	0.0	-2.92	0.56	0.81	2.83	3.4	0.003	0.56	0.0	0.04	12.47	0.00	2.574	3.81	2.33	2.2	97.8	0.0	2.25	0.34	0.55	0.83	2.38	5419	598	4	0	26	0	0	logfile
✔	7S62	24847	2024-09-25	2021-09-12	3.65	3.86	3.61	3.8	0.005	0.72	0.0	0.05	19.02	0.01	1.694	11.28	0.08	8.9	91.0	0.1	-1.38	0.66	0.78	1.97	3.8	0.003	0.68	0.0	0.05	16.82	0.01	2.353	8.85	3.46	7.9	91.9	0.2	-1.14	0.35	0.66	0.77	1.32	11013	1382	2	0	17	0	0	logfile
✔	5VA2	8651	2024-09-27	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.18	1.08	7.7	90.7	1.6	-3.86	0.64	0.74	-0.32	4.3	0.003	0.99	0.0	0.05	16.35	0.00	2.508	17.86	2.44	4.3	95.3	0.4	-1.38	1.93	0.67	0.83	0.16	17576	2232	4	0	0	0	0	logfile
✔	6M5U	30093	2024-09-25	2020-03-11	3.8	3.78	—	3.8	0.007	0.86	1.0	0.05	16.07	0.00	2.210	18.52	5.59	9.0	90.8	0.2	-3.03	0.62	0.81	1.90	3.8	0.003	0.68	0.0	0.04	16.93	0.00	2.092	8.64	4.03	8.4	91.6	0.0	-0.05	2.21	0.65	0.82	1.38	10549	1359	5	0	5	0	0	logfile
✔	6UVR	20914	2024-09-29	2019-11-04	4.0	3.50	—	3.4	0.011	1.12	0.0	0.06	8.48	0.01	2.021	10.49	0.00	10.4	89.6	0.0	-5.14	0.62	0.76	—	3.4	0.002	0.54	0.0	0.04	13.27	0.00	2.456	4.37	0.56	5.8	94.2	0.0	2.72	1.43	0.65	0.80	—	22692	1920	12	0	0	0	9696	logfile
✔	7JGF	22325	2024-09-23	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.49	0.0	0.04	13.16	0.00	2.344	47.75	0.41	5.2	94.8	0.0	0.89	0.65	0.41	0.45	—	4477	532	1	0	0	0	30	logfile
✔	6E2F	8961	2024-09-29	2018-07-11	3.9	4.57	—	4.3	0.010	1.36	0.0	0.06	11.83	0.01	2.264	4.30	1.40	10.6	89.0	0.4	-5.19	0.71	0.85	2.22	4.3	0.004	0.89	0.0	0.04	15.10	0.00	2.270	8.65	2.71	9.6	90.3	0.1	-0.21	1.74	0.70	0.82	1.39	21204	2640	7	0	6	0	0	logfile
✔	7YUY	34115	2024-09-26	2022-08-18	3.5	3.66	3.45	3.6	0.006	0.87	0.0	0.05	15.06	0.01	2.081	7.73	0.32	9.7	90.1	0.2	-2.51	0.69	0.85	3.04	3.6	0.003	0.63	0.0	0.04	15.91	0.00	2.556	3.95	1.81	8.0	91.8	0.2	-0.44	1.01	0.69	0.85	2.01	12391	1503	4	0	31	0	0	logfile
✔	8HBD	34619	2024-09-24	2022-10-28	2.99	2.40	2.80	3.0	0.003	0.71	0.0	0.04	16.47	0.00	1.912	13.34	1.85	3.8	96.0	0.2	0.26	0.74	0.76	1.67	2.2	0.003	0.68	0.0	0.04	17.33	0.00	2.496	12.19	4.47	3.3	96.7	0.0	0.22	1.19	0.77	0.79	1.85	8803	1158	6	0	0	0	0	logfile
✔	7RAV	24387	2024-09-24	2021-07-02	3.3	2.69	3.21	2.4	0.004	0.93	0.0	0.05	15.92	0.01	2.224	16.68	1.17	16.7	82.9	0.4	-3.36	0.72	0.71	2.18	2.2	0.004	0.80	0.0	0.05	17.73	0.00	2.400	12.55	2.93	15.4	84.4	0.1	-2.66	0.44	0.73	0.73	2.09	6215	773	2	0	1	0	0	logfile
✔	7YK6	33888	2024-09-24	2022-07-21	3.03	2.39	3.06	2.1	0.006	0.73	0.0	0.05	14.22	0.01	2.130	11.24	0.21	5.5	94.4	0.1	-0.18	0.73	0.74	2.51	2.1	0.004	0.64	0.0	0.04	16.22	0.00	2.490	8.18	2.24	4.6	95.4	0.0	0.29	1.12	0.74	0.75	1.78	8736	1118	6	0	1	0	0	logfile
✔	7WGZ	32493	2024-09-29	2021-12-29	4.5	5.31	—	4.5	0.007	0.71	0.0	0.05	15.46	0.00	1.262	7.93	0.04	5.2	94.7	0.1	-0.64	0.84	0.79	—	4.5	0.003	0.57	0.0	0.04	12.87	0.00	2.391	7.93	0.00	4.9	95.0	0.1	-0.20	0.48	0.86	0.84	—	21920	2879	11	0	25	0	0	logfile
✔	7Y67	33636	2024-09-25	2022-06-18	2.8	2.24	2.75	2.1	0.003	0.69	0.0	0.04	13.10	0.01	1.329	7.05	0.10	2.5	97.5	0.0	0.59	0.78	0.77	2.53	2.1	0.004	0.60	0.0	0.04	16.91	0.00	2.503	4.34	1.98	3.3	96.7	0.0	0.67	0.97	0.80	0.82	2.64	8889	1135	7	0	1	0	0	logfile
✔	5A6E	3062	2024-09-26	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.002	0.56	0.0	0.03	10.40	0.00	2.249	6.20	0.00	5.1	94.9	0.0	-0.28	1.44	0.38	0.66	—	11093	634	4	0	182	0	5102	logfile
✔	6XN4	22267	2024-09-28	2020-07-02	3.35	3.89	—	3.3	0.009	1.24	0.0	0.07	17.20	0.01	2.166	10.06	0.00	10.0	89.8	0.1	-3.52	0.87	0.78	1.71	3.3	0.005	0.75	0.0	0.04	17.95	0.00	2.486	14.28	1.91	9.7	90.2	0.1	-1.90	0.39	0.88	0.80	1.23	19273	2234	10	65	0	0	0	logfile
✔	6oY3	20221	2024-09-25	2019-05-14	4.0	4.14	—	4.1	0.009	1.10	0.0	0.06	15.73	0.01	2.285	9.49	0.40	6.9	92.9	0.2	-6.09	0.68	0.81	—	4.1	0.003	0.70	0.0	0.04	17.00	0.00	2.330	5.06	2.10	3.1	96.8	0.1	-1.58	0.50	0.68	0.80	—	9534	1188	4	0	4	0	0	logfile

• ← previous
• Page 2 of 538
• next →