Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8oiD	16889	2024-09-27	2023-03-22	2.3	2.37	2.20	2.3	0.004	0.61	0.0	0.04	13.01	0.00	1.840	4.07	0.96	3.8	96.2	0.0	-0.64	0.73	0.87	5.49	2.3	0.003	0.62	0.0	0.04	15.98	0.00	1.923	4.56	1.41	1.0	99.0	0.0	2.11	1.08	0.74	0.89	4.91	15206	1850	15	0	10	616	0	logfile
✔	8P0G	17333	2024-09-25	2023-05-10	3.17	3.78	3.18	3.2	0.002	0.42	0.0	0.04	16.06	0.00	1.965	5.02	0.17	3.7	96.2	0.1	0.93	0.91	0.84	2.75	3.3	0.003	0.56	0.0	0.04	17.04	0.00	2.016	6.84	1.90	3.9	96.1	0.0	0.87	0.62	0.93	0.90	2.67	11331	1356	6	19	1	0	0	logfile
✔	8B4i	15849	2024-09-24	2022-09-20	3.32	3.85	3.38	3.7	0.004	0.62	0.0	0.04	16.41	0.00	2.205	3.85	0.24	1.5	98.5	0.0	0.59	0.62	0.85	3.66	3.6	0.003	0.68	0.0	0.04	13.92	0.00	2.516	5.87	1.58	1.9	98.1	0.0	1.51	1.02	0.60	0.82	2.88	8242	1026	14	0	9	0	0	logfile
✔	8JZZ	36755	2024-09-24	2023-07-06	3.31	3.67	3.40	3.7	0.002	0.54	0.0	0.04	13.17	0.00	2.205	9.02	0.24	4.4	95.6	0.0	-0.38	0.61	0.70	2.06	3.7	0.003	0.60	0.0	0.04	15.10	0.00	2.569	8.61	2.28	4.8	95.2	0.0	-0.14	0.98	0.59	0.71	2.03	8680	1198	6	0	0	0	0	logfile
✔	8P7W	17537	2024-09-26	2023-05-31	3.04	3.33	3.02	3.3	0.004	0.72	0.0	0.04	15.99	0.00	2.206	9.76	0.45	6.1	93.9	0.0	-1.44	0.65	0.86	2.29	3.4	0.004	0.67	1.0	0.04	16.52	0.00	2.274	8.19	3.18	6.0	94.0	0.0	-0.36	0.95	0.66	0.87	2.35	14380	1852	8	0	0	0	0	logfile
✔	8TJQ	41308	2024-09-25	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.009	0.77	0.0	0.04	24.60	0.01	1.823	21.49	0.00	0.0	0.0	0.0	—	0.18	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	8iEJ	35383	2024-09-27	2023-02-15	3.12	3.65	3.13	3.1	0.006	0.64	0.0	0.04	26.50	0.00	1.421	11.02	1.32	1.9	98.1	0.0	1.90	0.90	0.86	2.06	3.1	0.003	0.64	0.0	0.04	26.72	0.00	2.125	10.08	1.56	2.6	97.4	0.0	1.96	0.46	0.90	0.87	1.27	14086	1030	15	294	4	0	0	logfile
✔	8TXW	41707	2024-09-26	2023-08-24	3.6	3.90	3.54	3.7	0.004	0.54	0.0	0.03	26.88	0.00	1.328	7.51	0.14	2.0	98.0	0.0	2.65	0.85	0.87	0.96	3.7	0.005	0.60	0.0	0.03	27.47	0.00	2.102	6.39	1.66	2.4	97.4	0.2	2.32	0.34	0.88	0.89	0.57	12835	857	12	294	0	0	0	logfile
✔	8PD3	17599	2024-09-24	2023-06-11	3.3	2.29	3.23	2.1	0.003	0.56	0.0	0.04	13.67	0.00	2.227	4.23	0.00	1.3	98.7	0.0	0.70	0.61	0.78	2.84	2.1	0.004	0.56	0.0	0.04	15.70	0.00	2.543	4.41	2.15	1.7	98.3	0.0	2.30	0.96	0.67	0.81	2.04	8121	1028	1	0	0	0	0	logfile
✘	8iEN	35387	2024-09-24	2023-02-15	3.25	3.66	3.30	7.2	0.004	1.21	0.0	0.04	14.04	0.00	2.168	8.43	0.24	5.0	94.9	0.1	-2.18	0.18	0.00	-0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7678	991	2	0	4	0	0	logfile
✔	8GQ6	34199	2024-09-29	2022-08-29	3.96	3.05	3.96	3.1	0.002	0.53	0.0	0.04	13.63	0.00	2.109	11.15	0.32	6.9	93.0	0.1	-0.79	0.66	0.63	0.59	3.1	0.004	0.87	0.0	0.05	17.09	0.00	1.865	16.63	3.44	8.8	91.1	0.1	-1.28	0.88	0.67	0.66	0.63	22293	2742	8	0	6	0	0	logfile
✔	8BLC	16106	2024-09-25	2022-11-09	2.7	2.79	2.65	2.7	0.005	0.51	0.0	0.04	17.03	0.00	2.062	11.39	1.44	0.9	99.1	0.0	1.13	0.81	0.83	2.54	2.7	0.003	0.49	0.0	0.04	16.99	0.00	2.010	9.22	0.85	1.1	98.9	0.0	1.44	1.00	0.82	0.86	2.43	55646	7336	42	0	42	1298	0	logfile
✘	8BM0	16116	2024-09-26	2022-11-10	3.4	3.46	3.31	3.1	0.003	0.64	0.0	0.04	16.35	0.00	2.002	9.99	0.11	1.6	98.4	0.0	0.68	0.85	0.84	2.49	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59394	8008	35	0	42	0	0	logfile
✔	7YVB	34122	2024-09-26	2022-08-19	2.9	2.91	2.82	3.1	0.007	0.78	0.0	0.05	14.82	0.00	2.215	13.18	1.17	4.7	95.3	0.0	-0.41	0.72	0.84	3.06	3.1	0.003	0.68	0.0	0.04	15.86	0.00	2.493	8.08	1.25	3.6	96.4	0.0	0.33	0.39	0.68	0.83	2.70	11889	1425	21	0	30	0	0	logfile
✔	8Z0F	39703	2024-09-28	2024-04-09	3.27	3.50	3.29	3.5	0.007	1.07	0.0	0.04	19.33	0.00	1.980	12.96	0.51	10.9	89.1	0.0	-2.49	0.59	0.75	0.86	3.5	0.003	0.61	0.0	0.04	19.04	0.00	2.257	8.55	5.03	10.0	90.0	0.0	-2.22	0.30	0.61	0.76	0.72	18066	1098	3	0	2	0	9062	logfile
✔	8BL2	16100	2024-09-25	2022-11-09	2.3	2.29	2.26	2.2	0.005	0.59	0.0	0.04	16.84	0.00	1.872	11.53	1.01	1.2	98.8	0.0	0.70	0.76	0.75	3.19	2.2	0.004	0.61	0.0	0.04	16.61	0.00	1.920	11.80	1.54	1.2	98.8	0.0	1.06	1.05	0.83	0.86	4.00	57128	7336	42	0	42	2780	0	logfile
✔	8X82	38133	2024-09-26	2023-11-27	2.8	2.70	2.78	2.9	0.002	0.41	0.0	0.03	16.43	0.00	2.181	5.24	0.84	0.8	99.2	0.0	3.68	0.57	0.78	2.85	2.9	0.002	0.42	0.0	0.03	17.26	0.00	2.635	3.77	1.99	1.6	98.4	0.0	3.67	0.39	0.59	0.80	2.45	12004	1520	4	0	0	0	0	logfile
✔	8JPF	36478	2024-09-23	2023-06-11	3.02	3.21	3.41	3.3	0.008	0.81	0.0	0.04	18.98	0.00	2.214	5.45	0.46	2.7	97.3	0.0	2.25	0.48	0.75	2.58	3.3	0.003	0.69	0.0	0.04	17.63	0.00	2.460	6.81	3.21	3.0	97.0	0.0	1.74	0.94	0.45	0.78	2.35	2269	304	3	0	1	0	0	logfile
✔	8EEA	28049	2024-09-30	2022-09-06	2.6	2.80	—	2.9	0.003	0.52	0.0	0.04	15.18	0.00	1.983	1.97	0.00	3.7	96.3	0.0	0.61	0.64	0.79	3.14	2.9	0.002	0.51	0.0	0.04	17.55	0.00	2.486	2.48	1.40	3.2	96.8	0.0	1.00	1.17	0.68	0.83	2.74	24480	3017	12	0	4	0	0	logfile
✔	8oZC	17304	2024-09-24	2023-05-09	4.0	4.25	4.05	4.0	0.002	0.62	0.0	0.04	13.40	0.00	2.124	14.20	0.00	6.7	92.9	0.3	-1.97	0.70	0.62	—	4.1	0.003	0.77	0.0	0.04	16.05	0.00	2.400	15.94	3.18	7.8	92.0	0.2	-2.15	0.71	0.72	0.65	—	7478	913	2	0	0	0	0	logfile

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