Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N9Q	24259	2024-09-24	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile
✔	6YW7	10960	2024-09-23	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	8.08	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.98	0.0	0.02	6.48	0.00	2.560	9.51	0.00	11.3	88.6	0.2	-3.41	5.70	0.81	0.74	—	5426	1788	9	0	2	0	0	logfile
✔	8E2J	27838	2024-09-24	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.47	0.0	0.02	17.86	0.00	2.280	7.99	2.36	1.2	98.8	0.0	4.33	1.68	0.45	0.67	0.86	6012	346	4	0	114	0	2694	logfile
✔	8WT8	37829	2024-09-27	2023-10-18	2.9	3.51	2.97	3.3	0.008	1.33	0.0	0.08	20.48	0.00	1.611	0.18	0.59	1.9	98.1	0.0	-2.17	0.89	0.88	2.68	3.3	0.003	0.55	0.0	0.03	21.13	0.00	1.971	4.09	0.79	1.2	98.8	0.0	2.50	0.47	0.87	0.89	1.86	14916	1246	11	239	1	0	0	logfile
✔	8V26	42899	2024-09-26	2023-11-21	3.33	3.60	3.33	3.4	0.004	0.60	0.0	0.04	27.21	0.00	2.255	7.19	0.28	1.9	98.1	0.0	2.29	0.89	0.89	1.12	3.4	0.004	0.55	0.0	0.03	27.37	0.00	2.437	5.29	1.96	2.2	97.8	0.0	2.94	0.27	0.89	0.89	1.28	12689	849	11	290	0	0	0	logfile
✔	9G2R	50981	2024-09-29	2024-07-11	3.88	4.71	3.95	3.8	0.010	1.24	0.0	0.09	13.90	0.02	2.353	8.96	0.58	1.7	98.3	0.0	0.17	0.81	0.73	0.27	3.9	0.003	0.62	1.0	0.03	15.88	0.00	2.515	9.38	1.24	0.6	99.4	0.0	5.33	1.55	0.85	0.82	0.14	22620	2824	12	0	0	0	0	logfile
✔	9CES	45517	2024-09-27	2024-06-27	3.28	3.52	3.31	3.5	0.013	1.96	0.0	0.10	23.23	0.03	2.515	1.01	0.91	4.1	95.9	0.0	-0.87	0.56	0.46	2.49	3.4	0.003	0.62	0.0	0.03	23.35	0.00	2.185	6.00	2.18	4.1	95.9	0.0	0.99	1.27	0.71	0.74	2.42	15839	612	4	181	0	0	7001	logfile
✔	8J92	36085	2024-09-25	2023-05-02	2.9	2.59	2.97	3.0	0.004	0.58	0.0	0.04	28.06	0.00	2.259	7.78	0.00	1.2	98.8	0.0	2.70	0.72	0.77	2.86	2.9	0.004	0.57	0.0	0.03	28.70	0.00	2.553	6.62	3.05	1.4	98.6	0.0	2.59	1.63	0.77	0.84	3.15	12003	749	10	298	0	0	0	logfile
✔	9CEJ	45503	2024-09-28	2024-06-26	2.53	2.84	2.56	2.8	0.003	0.60	0.0	0.04	12.85	0.00	2.060	7.19	0.04	1.7	98.2	0.1	0.38	0.56	0.84	3.63	2.8	0.003	0.48	0.0	0.03	15.14	0.00	2.370	4.41	1.51	0.7	99.3	0.0	4.44	1.23	0.55	0.85	3.31	69696	9720	36	0	0	0	0	logfile
✔	9CEo	45505	2024-09-29	2024-06-26	2.76	3.07	2.80	3.0	0.003	0.65	0.0	0.04	12.76	0.00	2.121	8.18	0.03	1.7	98.2	0.1	0.09	0.58	0.85	2.90	3.0	0.003	0.58	0.0	0.03	15.17	0.00	2.118	5.02	1.27	0.7	99.3	0.0	4.92	0.40	0.58	0.87	2.44	73416	10260	38	0	0	0	0	logfile
✔	8X7J	38100	2024-09-26	2023-11-24	3.39	4.10	3.41	2.9	0.003	0.52	0.0	0.03	25.85	0.00	1.882	10.74	1.73	2.1	97.9	0.0	2.58	0.90	0.81	2.21	2.9	0.003	0.61	0.0	0.03	26.60	0.00	2.048	10.41	1.24	2.7	97.3	0.0	2.13	1.25	0.91	0.84	1.43	13739	1018	14	288	2	0	0	logfile
✔	8V28	42901	2024-09-26	2023-11-22	3.36	3.62	3.37	3.4	0.004	0.58	0.0	0.04	27.27	0.00	2.295	5.26	0.56	2.7	97.3	0.0	2.83	0.89	0.88	1.19	3.4	0.003	0.53	0.0	0.03	27.37	0.00	2.480	5.43	1.27	2.8	97.2	0.0	3.17	1.41	0.89	0.89	1.32	12659	845	11	290	0	0	0	logfile
✔	8YBK	39120	2024-09-25	2024-02-14	2.69	2.95	2.58	2.9	0.007	0.99	0.0	0.05	27.85	0.01	2.369	0.00	0.00	1.7	98.3	0.0	1.55	0.81	0.84	3.15	2.9	0.004	0.59	0.0	0.03	27.89	0.00	2.536	4.53	1.55	1.6	98.4	0.0	2.73	1.11	0.79	0.84	2.83	10261	708	10	228	0	0	0	logfile
✔	8JBX	36148	2024-09-25	2023-05-09	3.35	4.24	3.64	3.8	0.004	0.58	0.0	0.03	28.65	0.00	2.242	10.38	0.48	3.1	96.9	0.0	1.72	0.90	0.87	1.03	3.9	0.004	0.65	0.0	0.03	28.66	0.00	2.339	11.08	2.08	4.1	95.9	0.0	2.07	1.18	0.89	0.86	1.10	11881	750	10	290	0	0	0	logfile
✔	8HWZ	35069	2024-09-26	2023-01-03	3.56	3.98	3.90	4.1	0.003	0.62	0.0	0.04	14.52	0.01	2.103	12.00	0.00	0.9	99.1	0.0	4.47	0.78	0.84	1.82	4.1	0.003	0.57	0.0	0.03	17.04	0.00	2.492	9.00	3.58	1.9	98.1	0.0	4.17	1.03	0.76	0.84	1.78	13625	1751	12	0	0	0	0	logfile
✔	8U2B	41844	2024-09-25	2023-09-05	0.86	3.74	2.85	3.4	0.011	1.83	0.0	0.08	9.63	0.01	2.506	0.50	0.00	2.4	97.6	0.0	0.09	0.80	0.85	5.79	3.4	0.003	0.58	0.0	0.03	13.70	0.00	2.598	10.04	2.79	2.0	98.0	0.0	4.66	1.04	0.83	0.93	3.07	11396	1665	37	0	0	0	0	logfile
✔	8W35	43762	2024-09-23	2024-02-21	2.61	2.59	2.60	2.7	0.005	0.91	0.0	0.04	19.54	0.01	2.350	0.62	1.00	1.3	98.7	0.0	-1.65	0.47	0.62	3.21	2.7	0.003	0.54	0.0	0.03	20.35	0.00	2.570	2.90	3.00	2.6	97.4	0.0	1.23	0.36	0.65	0.76	2.96	2611	234	3	34	0	0	0	logfile
✔	9ENC	19831	2024-09-23	2024-03-12	3.36	4.12	3.44	3.9	0.002	0.51	0.0	0.04	21.40	0.00	2.232	3.79	0.20	5.3	94.7	0.0	-0.18	0.88	0.87	2.37	3.9	0.002	0.50	0.0	0.03	21.61	0.00	2.485	3.18	1.40	4.7	95.3	0.0	0.28	1.30	0.87	0.86	1.67	6249	566	3	75	0	0	0	logfile
✔	8WH5	37529	2024-09-26	2023-09-22	3.58	3.82	3.52	3.5	0.012	1.35	0.0	0.07	25.45	0.01	2.219	14.70	0.91	7.4	91.8	0.8	-3.46	0.85	0.80	1.13	3.5	0.004	0.64	0.0	0.03	25.85	0.00	2.506	7.99	2.24	4.4	95.3	0.3	1.27	1.01	0.88	0.85	1.05	14663	1156	11	266	0	0	0	logfile
✔	8UBY	42109	2024-09-24	2023-09-25	2.67	3.13	2.68	3.0	0.002	0.47	0.0	0.03	14.53	0.01	2.118	4.08	0.56	1.7	98.3	0.0	3.72	0.67	0.88	4.26	3.0	0.003	0.49	0.0	0.03	14.83	0.00	2.573	3.64	1.13	1.9	98.1	0.0	3.96	0.89	0.60	0.86	3.25	6756	419	2	0	4	46	3345	logfile

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