Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7DZY	30921	2024-09-28	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.89	0.0	0.00	5.59	0.00	2.061	1.34	0.00	12.1	87.8	0.1	-3.07	2.19	0.71	0.71	—	18708	4677	9	0	0	0	0	logfile
✔	6YW7	10960	2024-09-23	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	8.08	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	0.98	0.0	0.02	6.48	0.00	2.560	9.51	0.00	11.3	88.6	0.2	-3.41	5.70	0.81	0.74	—	5426	1788	9	0	2	0	0	logfile
✔	8E2J	27838	2024-09-24	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.47	0.0	0.02	17.86	0.00	2.280	7.99	2.36	1.2	98.8	0.0	4.33	1.68	0.45	0.67	0.86	6012	346	4	0	114	0	2694	logfile
✔	6E9Y	9020	2024-09-24	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.002	0.48	0.0	0.03	11.00	0.00	2.184	5.82	0.00	0.6	99.4	0.0	2.82	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	6oFE	20043	2024-09-26	2019-03-29	3.61	3.70	—	3.6	0.006	0.63	0.0	0.04	10.07	0.01	2.325	1.57	0.00	5.3	94.7	0.0	-6.24	0.64	0.85	2.72	3.6	0.003	0.58	0.0	0.03	16.13	0.00	2.543	5.05	1.54	4.5	95.5	0.0	3.73	0.56	0.64	0.86	1.12	12220	1560	20	0	0	0	0	logfile
✔	6XMF	22257	2024-09-24	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	21.16	0.00	2.246	8.60	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.63	0.0	0.03	21.58	0.00	2.522	11.71	3.77	8.8	91.2	0.0	-0.50	0.45	0.72	0.77	2.83	7382	627	3	109	1	0	0	logfile
✔	6WL8	21817	2024-09-29	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.003	0.58	0.0	0.03	15.32	0.00	2.353	9.20	0.00	0.3	99.7	0.0	4.72	1.80	0.74	0.87	—	23850	3074	106	0	0	0	0	logfile
✔	3J89	6123	2024-09-24	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.004	0.54	0.0	0.03	20.35	0.01	2.195	6.54	4.51	1.0	99.0	0.0	2.98	1.37	0.81	0.79	0.60	9025	551	19	0	0	0	4598	logfile
✔	7PZD	13727	2024-09-29	2021-10-12	3.6	3.77	—	3.8	0.010	1.24	0.0	0.08	16.79	0.01	2.384	6.88	1.27	5.6	94.4	0.0	-3.73	0.68	0.81	1.20	3.8	0.003	0.68	0.0	0.03	18.61	0.01	2.405	6.29	1.13	4.2	95.8	0.0	0.83	1.68	0.67	0.82	0.60	13644	1656	18	0	0	0	0	logfile
✔	8iXK	35794	2024-09-26	2023-04-01	3.3	3.43	3.25	3.4	0.005	0.71	0.0	0.04	12.45	0.00	2.310	4.15	0.65	2.9	97.1	0.0	4.29	0.77	0.86	2.56	3.4	0.003	0.49	0.0	0.03	15.03	0.00	2.535	5.42	1.50	1.2	98.8	0.0	4.83	0.37	0.76	0.87	2.03	14790	1950	25	0	0	0	0	logfile
✔	7Q65	13852	2024-09-23	2021-11-05	3.32	2.96	3.26	3.3	0.016	1.56	0.0	0.10	10.10	0.01	2.159	3.45	8.33	10.5	89.5	0.0	-5.74	0.64	0.85	4.16	3.3	0.004	0.67	0.0	0.03	13.35	0.00	2.571	10.69	7.58	7.9	92.1	0.0	-5.24	0.68	0.57	0.84	4.51	6204	880	22	0	0	0	0	logfile
✔	8YBJ	39119	2024-09-26	2024-02-14	2.38	2.51	2.33	2.5	0.007	0.96	0.0	0.05	28.23	0.01	2.443	0.00	0.00	0.7	99.3	0.0	2.32	0.77	0.84	4.20	2.5	0.004	0.58	0.0	0.03	28.34	0.01	2.521	3.22	2.07	0.5	99.5	0.0	2.74	0.31	0.76	0.84	3.76	11953	758	10	290	0	0	0	logfile
✔	8JLA	36390	2024-09-26	2023-06-02	3.44	2.77	3.38	3.0	0.006	0.88	0.0	0.05	28.21	0.01	1.607	3.59	0.16	1.4	98.6	0.0	0.68	0.78	0.82	1.24	2.9	0.004	0.61	0.0	0.03	28.28	0.00	2.117	7.22	3.87	1.6	98.4	0.0	3.37	0.58	0.82	0.85	1.31	12314	748	10	312	0	0	0	logfile
✔	8BHW	16071	2024-09-29	2022-11-01	3.2	4.17	3.28	3.6	0.003	0.56	0.0	0.03	16.12	0.00	2.188	6.49	0.18	3.2	96.8	0.0	3.05	0.76	0.83	1.53	3.6	0.003	0.53	0.0	0.03	16.66	0.00	2.605	4.89	1.59	3.3	96.7	0.0	3.51	1.11	0.76	0.83	1.22	21240	2656	8	0	0	0	0	logfile
✔	8Soi	40658	2024-09-29	2023-04-28	4.2	3.78	—	3.6	0.003	0.60	0.0	0.04	15.47	0.00	2.090	9.52	0.09	3.2	96.7	0.1	1.61	0.66	0.64	—	3.6	0.003	0.55	0.0	0.03	14.27	0.00	2.250	7.10	0.00	3.5	96.4	0.2	1.88	0.53	0.66	0.62	—	20708	1276	4	0	0	0	10465	logfile
✔	8AXB	15698	2024-09-24	2022-08-31	2.87	3.44	2.88	3.1	0.004	0.62	0.0	0.03	23.87	0.01	2.036	18.05	0.53	5.9	94.1	0.0	-0.94	0.79	0.71	1.53	3.1	0.003	0.61	0.0	0.03	23.56	0.00	2.054	14.50	2.38	3.3	96.7	0.0	0.19	0.55	0.79	0.73	1.07	8383	430	3	230	0	2	0	logfile
✔	6oFG	20045	2024-09-25	2019-03-29	2.9	3.01	—	3.0	0.008	0.75	0.0	0.04	10.04	0.01	2.263	5.31	0.00	3.9	96.1	0.0	-6.09	0.65	0.85	4.64	3.0	0.003	0.56	0.0	0.03	14.09	0.00	2.506	5.08	2.99	3.4	96.6	0.0	4.65	0.50	0.66	0.87	2.96	10980	1404	18	0	0	0	0	logfile
✔	7RX5	24725	2024-09-24	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.33	0.0	0.03	12.76	0.00	2.676	2.72	0.00	0.0	100.0	0.0	5.55	0.19	0.70	0.87	2.91	9120	1160	40	0	0	0	0	logfile
✔	7SYM	25533	2024-09-30	2021-11-25	4.8	3.64	4.44	3.5	0.003	0.83	1.0	0.04	22.25	0.01	2.245	5.29	0.00	5.3	94.7	0.0	-2.78	0.63	0.68	—	3.5	0.002	0.57	0.0	0.03	22.01	0.00	2.156	8.53	0.05	4.2	95.8	0.0	-1.27	1.06	0.64	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7U0G	26258	2024-09-28	2022-02-18	2.6	3.10	—	2.9	0.006	0.78	2.0	0.04	25.56	0.00	2.154	14.81	0.87	3.8	96.1	0.1	0.26	0.84	0.87	2.78	3.0	0.004	0.55	0.0	0.03	26.20	0.00	2.208	21.04	2.29	5.1	94.9	0.0	1.86	1.13	0.82	0.87	2.78	18571	1510	15	266	0	0	1244	logfile

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