Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UTZ	26795	2024-09-30	2022-04-28	2.4	2.07	—	2.4	0.004	0.69	0.0	0.04	12.46	0.01	2.137	3.96	0.08	3.0	97.0	0.0	-0.05	0.66	0.68	3.51	1.6	0.004	0.60	0.0	0.04	15.19	0.00	2.306	6.36	1.79	3.6	96.4	0.0	-0.14	0.75	0.72	0.76	3.56	23679	1536	10	0	8	0	11632	logfile
✔	8T4S	41039	2024-09-29	2023-06-09	2.6	2.55	—	1.7	0.005	0.70	0.0	0.05	23.99	0.01	1.654	12.19	3.03	4.5	95.1	0.4	-0.03	0.89	0.87	3.39	1.6	0.007	0.72	1.0	0.05	23.44	0.01	1.792	7.26	2.89	4.4	95.3	0.3	0.11	1.11	0.89	0.87	3.30	74894	4895	42	1671	100	4	0	logfile
✔	7L1Q	23115	2024-09-30	2020-12-15	3.4	2.29	—	2.0	0.008	1.29	6.0	0.07	15.53	0.01	1.807	2.68	2.54	3.7	96.1	0.2	-0.80	0.72	0.67	1.56	1.6	0.005	0.84	0.0	0.05	18.34	0.01	1.777	13.62	5.43	5.3	94.7	0.0	-0.51	1.18	0.73	0.74	1.25	24204	3118	13	0	13	0	0	logfile
✔	8D33	27154	2024-09-27	2022-05-31	2.46	2.01	2.48	1.7	0.003	0.55	0.0	0.04	13.19	0.00	2.091	4.01	0.39	3.5	96.5	0.1	0.90	0.73	0.78	3.10	1.6	0.003	0.64	0.0	0.04	18.15	0.00	2.312	6.35	3.04	3.2	96.8	0.0	1.11	1.33	0.73	0.79	2.84	15272	1784	6	46	2	0	0	logfile
✔	8oMA	16972	2024-09-25	2023-03-31	3.29	2.61	3.29	3.2	0.008	1.30	1.0	0.09	19.92	0.01	1.878	28.14	2.97	7.9	92.1	0.0	-1.51	0.68	0.70	0.46	1.6	0.004	0.74	0.0	0.05	20.31	0.00	1.866	20.65	3.47	6.5	93.5	0.0	-0.35	1.95	0.64	0.60	0.54	11379	1337	6	34	3	0	0	logfile
✔	7FiJ	31599	2024-09-23	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.004	0.80	0.0	0.05	11.52	0.00	2.490	9.16	7.50	11.3	88.7	0.0	-1.47	0.69	0.61	0.55	2.86	3061	561	1	0	0	0	0	logfile
✔	7SiL	25143	2024-09-26	2021-10-14	2.7	1.97	—	1.5	0.004	0.70	0.0	0.05	13.55	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.62	0.0	0.04	15.44	0.00	2.382	6.81	1.47	1.9	98.1	0.0	0.57	0.93	0.77	0.78	2.97	12924	1564	10	0	34	0	0	logfile
✔	7USM	26739	2024-09-26	2022-04-25	2.7	2.25	—	1.5	0.003	0.63	0.0	0.04	12.83	0.01	2.109	6.35	0.00	3.9	96.1	0.0	-0.89	0.72	0.68	2.45	1.6	0.004	0.75	0.0	0.05	16.20	0.00	2.209	7.93	1.98	4.0	96.0	0.0	-0.64	0.48	0.74	0.72	2.40	11893	1521	5	0	15	0	0	logfile
✔	7UAF	26423	2024-09-28	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.80	13.0	0.10	14.57	0.02	1.783	1.19	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.005	0.67	0.0	0.05	16.08	0.00	1.875	5.67	2.53	3.4	96.6	0.0	-0.14	1.19	0.83	0.83	4.28	17864	2131	22	0	58	0	0	logfile
✔	8EMQ	28259	2024-09-27	2022-09-28	1.66	1.59	1.68	1.6	0.011	1.31	0.0	0.07	15.25	0.01	0.733	5.98	1.91	0.6	99.4	0.0	2.37	0.66	0.78	9.05	1.6	0.004	0.67	0.0	0.04	14.73	0.01	2.110	3.28	0.64	1.8	98.2	0.0	5.21	0.42	0.82	0.89	8.89	37805	4128	72	0	30	2975	0	logfile
✔	7SiM	25144	2024-09-26	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.38	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.57	0.0	0.04	15.28	0.00	2.372	7.24	0.74	2.0	98.0	0.0	0.50	0.94	0.75	0.76	3.18	12826	1564	10	0	28	0	0	logfile
✔	7XJG	33226	2024-09-26	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	24.50	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.60	0.0	0.04	23.93	0.00	2.482	5.56	3.55	3.7	96.3	0.0	0.51	0.89	0.79	0.80	2.56	13167	1066	12	216	2	0	0	logfile
✔	8GAV	29909	2024-09-28	2023-02-23	2.7	2.16	2.58	1.7	0.011	1.05	0.0	0.07	9.78	0.01	2.021	2.60	0.38	5.7	94.1	0.2	-3.07	0.81	0.82	5.61	1.6	0.004	0.71	0.0	0.05	14.14	0.00	2.528	3.16	2.65	4.7	95.3	0.0	-0.92	1.20	0.82	0.84	4.81	19088	2464	16	0	12	0	0	logfile
✔	8XZJ	38798	2024-09-24	2024-01-21	3.0	2.01	—	1.7	0.011	0.94	0.0	0.06	11.33	0.01	2.252	11.85	2.72	1.8	97.9	0.3	0.36	0.70	0.73	4.12	1.6	0.005	0.71	0.0	0.05	15.03	0.00	2.540	8.03	1.81	2.4	97.5	0.1	1.00	1.18	0.74	0.80	3.40	9106	1162	6	0	0	0	0	logfile
✔	6Z9F	11122	2024-09-29	2020-06-03	1.56	1.61	1.61	1.6	0.015	1.74	48.0	0.10	15.51	0.01	1.782	5.46	3.66	1.7	98.3	0.0	2.70	0.68	0.69	8.63	1.6	0.004	0.72	0.0	0.04	15.17	0.01	2.247	3.34	3.02	1.8	98.2	0.0	4.53	0.91	0.84	0.86	8.47	41020	4152	72	0	32	4172	0	logfile
✔	8R2H	18842	2024-09-25	2023-11-06	2.42	2.05	2.56	1.6	0.003	0.52	0.0	0.04	10.24	0.01	1.914	10.77	0.55	2.6	97.4	0.0	-0.09	0.76	0.72	3.71	1.6	0.005	0.62	0.0	0.05	14.01	0.00	1.901	10.55	1.81	2.4	97.6	0.0	-0.04	0.38	0.75	0.73	3.05	11484	1394	4	0	4	0	0	logfile
✔	7SEP	25074	2024-09-24	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	1.6	0.003	0.66	0.0	0.05	16.75	0.01	2.501	10.55	6.91	3.3	96.7	0.0	-0.23	1.29	0.72	0.71	2.18	7641	930	2	0	0	0	0	logfile
✔	8XZi	38797	2024-09-24	2024-01-21	2.7	1.98	—	1.7	0.021	1.72	2.0	0.09	9.40	0.01	1.226	1.67	0.20	2.2	97.6	0.2	1.22	0.73	0.82	4.38	1.6	0.003	0.65	0.0	0.04	14.94	0.00	2.484	6.25	1.73	3.4	96.6	0.0	1.16	1.09	0.75	0.85	3.24	9041	1149	6	0	1	0	0	logfile
✔	8AG4	15415	2024-09-25	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.6	0.003	0.53	0.0	0.04	15.63	0.00	2.552	4.31	0.95	3.6	96.4	0.0	0.78	0.31	0.81	0.83	3.74	11155	1384	4	0	0	0	0	logfile
✔	8BPA	16147	2024-09-25	2022-11-16	3.7	2.50	3.80	1.6	0.005	0.85	0.0	0.05	18.50	0.01	2.127	18.60	0.97	4.0	96.0	0.0	0.00	0.69	0.65	0.97	1.6	0.003	0.75	0.0	0.04	19.15	0.01	2.049	12.00	4.24	3.7	96.3	0.0	0.39	1.21	0.69	0.66	1.00	10393	1280	6	0	7	0	0	logfile

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