Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oG3	20051	2024-09-23	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	8K0Q	36777	2024-09-29	2023-07-10	3.14	3.28	3.12	3.2	0.008	1.01	0.0	0.06	25.11	0.01	1.792	9.81	0.00	0.0	0.0	0.0	—	0.72	0.73	—	3.2	0.005	0.68	0.0	0.04	24.57	0.01	1.748	9.98	0.00	0.0	0.0	0.0	—	1.37	0.73	0.74	—	23586	0	6	1100	4	0	0	logfile
✔	7LYS	23600	2024-09-26	2021-03-08	3.05	2.55	3.08	3.1	0.003	0.54	0.0	0.04	20.02	0.00	1.976	5.82	0.17	0.0	100.0	0.0	-1.46	0.83	0.83	2.05	3.1	0.003	0.56	0.0	0.04	20.50	0.00	2.434	4.35	0.87	3.2	96.8	0.0	0.93	0.36	0.83	0.84	2.15	13573	669	4	89	0	0	6374	logfile
✔	7R6N	24283	2024-09-24	2021-06-22	4.1	3.51	—	3.7	0.006	0.96	0.0	0.04	25.04	0.01	2.036	3.68	0.00	0.0	0.0	0.0	—	0.56	0.75	—	3.7	0.007	0.83	0.0	0.04	24.91	0.01	1.762	15.26	0.00	0.0	0.0	0.0	—	1.26	0.58	0.76	—	7588	0	2	354	12	0	0	logfile
✔	7XSK	33425	2024-09-26	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	24.66	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.69	0.0	0.04	25.76	0.01	1.907	23.98	0.00	0.0	0.0	0.0	—	1.91	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7EZ0	31385	2024-09-24	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.004	0.61	0.0	0.03	23.75	0.00	1.904	6.34	0.00	0.0	0.0	0.0	—	2.04	0.77	0.86	—	8306	0	2	387	27	0	0	logfile
✔	8QPZ	18570	2024-09-23	2023-10-03	2.5	2.74	2.49	2.9	0.004	0.70	0.0	0.05	10.84	0.00	2.495	9.26	8.57	0.0	100.0	0.0	-1.32	0.50	0.78	4.05	2.9	0.007	0.69	0.0	0.05	12.95	0.00	2.520	4.15	8.33	6.1	93.9	0.0	-2.53	0.43	0.53	0.81	4.63	4116	612	12	0	0	0	0	logfile
✔	6U5o	20651	2024-09-30	2019-08-28	3.7	3.81	—	3.8	0.005	0.78	0.0	0.04	14.70	0.01	2.093	5.81	0.00	0.0	100.0	0.0	-4.22	0.65	0.75	1.93	3.8	0.005	0.86	1.0	0.04	16.95	0.00	2.138	8.17	1.85	8.3	91.7	0.0	-1.17	0.86	0.66	0.79	2.18	26316	1623	5	0	0	0	13339	logfile
✔	7R6L	24281	2024-09-24	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.74	0.0	0.04	24.57	0.01	1.906	6.18	0.00	0.0	0.0	0.0	—	0.10	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	8i7N	35223	2024-09-24	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.003	0.53	0.0	0.03	23.01	0.00	1.950	4.52	0.00	0.0	0.0	0.0	—	0.91	0.87	0.91	—	8979	0	2	418	29	0	0	logfile
✔	7PBW	13307	2024-09-25	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.005	0.83	0.0	0.04	14.43	0.01	2.204	6.90	0.15	0.0	100.0	0.0	4.47	0.28	0.77	0.90	7.33	9500	873	54	0	81	230	0	logfile
✔	5G2Y	3332	2024-09-26	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	22.50	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.03	0.0	0.05	28.69	0.01	2.040	55.40	0.00	0.0	0.0	0.0	—	4.00	0.88	0.78	—	13494	0	1	630	0	0	0	logfile
✔	7RZV	24779	2024-09-23	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.35	0.0	0.03	15.93	0.00	2.430	3.69	1.01	0.0	100.0	0.0	5.97	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	6LHW	0901	2024-09-26	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.28	0.0	0.04	6.20	0.00	2.244	9.56	0.00	0.0	0.0	0.0	—	2.92	0.85	0.76	—	7644	0	3	0	1541	0	0	logfile
✔	6UET	20756	2024-09-23	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	26.22	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.98	0.0	0.05	27.49	0.01	2.150	47.53	0.00	0.0	0.0	0.0	—	0.74	0.66	0.80	—	3869	0	2	119	1	0	1291	logfile
✔	7XSL	33426	2024-09-26	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	24.69	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.71	0.0	0.04	25.74	0.01	1.881	26.63	0.00	0.0	0.0	0.0	—	1.02	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7YCH	33739	2024-09-24	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.68	0.0	0.04	24.23	0.00	1.795	28.44	0.00	0.0	0.0	0.0	—	1.46	0.94	0.88	—	8661	0	3	404	4	0	0	logfile
✔	6LHV	0900	2024-09-27	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.33	0.0	0.04	6.42	0.00	2.267	12.16	0.00	0.0	0.0	0.0	—	3.57	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	8KF4	37198	2024-09-23	2023-08-15	3.0	3.12	2.82	3.2	0.010	0.77	0.0	0.07	12.82	0.00	2.605	1.00	0.00	0.0	100.0	0.0	-4.40	0.39	0.91	6.86	3.3	0.003	0.51	0.0	0.06	14.50	0.00	2.667	0.66	0.67	0.0	100.0	0.0	-1.07	1.20	0.39	0.91	7.60	1500	204	6	0	0	0	0	logfile
✔	7XD3	33134	2024-09-24	2022-03-26	4.05	4.16	—	3.8	0.003	0.62	0.0	0.04	24.05	0.00	1.960	1.21	0.00	0.0	0.0	0.0	—	0.85	0.74	—	3.9	0.007	0.77	0.0	0.04	24.20	0.01	1.697	13.89	0.00	0.0	0.0	0.0	—	1.82	0.87	0.82	—	9062	0	2	423	28	0	0	logfile

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