Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9iBZ	52819	2025-09-18	2025-02-14	3.08	3.31	—	3.6	0.003	0.50	0.0	0.04	12.86	0.00	2.216	6.59	0.68	2.3	97.7	0.0	0.44	0.77	0.78	2.69	3.6	0.003	0.57	0.0	0.04	15.92	0.00	2.345	7.19	1.71	2.3	97.7	0.0	0.91	1.31	0.77	0.78	2.48	14339	1680	6	41	3	0	0	logfile
✔	9iBX	52815	2025-09-18	2025-02-14	2.54	3.36	2.59	3.2	0.004	0.59	0.0	0.04	13.66	0.00	2.084	6.21	0.55	2.1	97.9	0.0	0.39	0.66	0.75	3.41	3.2	0.005	0.61	0.0	0.04	16.31	0.00	2.258	6.36	2.22	2.2	97.8	0.0	0.92	1.27	0.64	0.72	2.83	14129	1661	6	38	2	0	0	logfile
✔	9iC1	52824	2025-09-18	2025-02-14	2.73	3.54	2.82	3.4	0.003	0.56	0.0	0.04	12.84	0.00	2.160	5.86	0.62	1.9	98.1	0.0	1.02	0.73	0.77	2.61	3.4	0.003	0.61	0.0	0.04	16.17	0.01	2.291	7.65	1.79	1.8	98.2	0.0	0.64	1.93	0.67	0.73	1.43	14182	1682	6	38	2	0	0	logfile
✔	9NB6	49218	2025-09-19	2025-02-13	3.3	3.00	—	3.4	0.003	0.55	0.0	0.04	17.73	0.00	2.241	8.91	3.64	2.8	97.2	0.0	-0.36	0.82	0.80	1.40	3.4	0.004	0.61	0.0	0.04	17.94	0.00	2.228	7.47	6.30	3.4	96.6	0.0	-0.57	0.30	0.83	0.81	1.08	24003	3122	12	0	36	0	0	logfile
✔	9NB5	49213	2025-09-18	2025-02-13	3.0	2.51	—	3.1	0.003	0.54	0.0	0.04	16.23	0.00	2.210	5.61	3.25	2.9	97.1	0.0	-0.95	0.84	0.84	2.17	3.1	0.003	0.59	0.0	0.04	16.99	0.00	2.248	4.39	4.16	3.1	96.8	0.0	-1.05	0.32	0.84	0.85	2.10	19608	2573	6	0	29	0	0	logfile
✔	9LWA	63436	2025-09-19	2025-02-13	3.83	3.58	3.67	3.5	0.009	0.57	0.0	0.04	13.21	0.00	1.070	22.74	0.00	1.4	98.6	0.0	0.09	0.73	0.85	2.74	3.5	0.004	0.80	2.0	0.04	16.26	0.00	2.073	6.79	1.93	2.3	97.7	0.0	-0.30	1.50	0.74	0.86	2.58	24072	3126	18	0	0	0	0	logfile
✔	9NB8	49221	2025-09-19	2025-02-13	4.0	3.99	—	4.0	0.004	0.65	0.0	0.04	15.49	0.00	2.101	17.12	2.02	4.7	95.2	0.1	-0.65	0.84	0.78	—	4.0	0.005	0.70	0.0	0.04	16.68	0.00	2.182	14.52	3.92	6.1	93.9	0.0	-0.87	0.42	0.84	0.79	—	22171	2904	11	0	25	0	0	logfile
✔	9LVB	63418	2025-09-17	2025-02-12	3.97	4.20	4.01	4.1	0.003	0.59	0.0	0.04	16.71	0.00	2.055	11.48	2.51	5.8	94.2	0.0	-0.96	0.66	0.72	1.70	4.1	0.003	0.68	0.0	0.04	17.04	0.00	2.505	9.75	3.99	5.0	95.0	0.0	-0.43	1.65	0.68	0.73	1.06	8192	1060	4	0	0	0	0	logfile
✔	9LVA	63417	2025-09-17	2025-02-12	3.52	3.59	3.62	3.6	0.003	0.53	0.0	0.04	16.84	0.00	2.369	8.31	2.34	3.4	96.6	0.0	2.10	0.42	0.58	0.54	3.6	0.003	0.62	0.0	0.04	17.36	0.00	2.574	8.61	4.97	3.2	96.8	0.0	1.78	0.41	0.44	0.60	0.49	3323	415	2	0	1	0	0	logfile
✔	9iBH	52810	2025-09-18	2025-02-12	2.5	3.08	2.56	2.9	0.006	0.98	0.0	0.06	15.65	0.04	2.108	5.94	2.85	3.9	96.1	0.0	-0.85	0.82	0.88	2.86	2.9	0.003	0.56	0.0	0.04	16.21	0.00	2.593	5.24	0.88	2.0	98.0	0.0	2.42	0.77	0.77	0.87	3.93	12906	1691	7	0	0	47	0	logfile
✔	9NAB	49184	2025-09-17	2025-02-11	2.54	3.26	2.57	3.1	0.004	0.80	1.0	0.05	17.25	0.01	2.416	15.69	5.35	5.5	94.4	0.1	-1.72	0.72	0.68	1.63	3.1	0.004	0.74	0.0	0.05	17.83	0.00	2.409	17.79	3.85	5.8	94.2	0.0	-1.50	1.70	0.68	0.65	1.58	8498	1106	4	0	0	0	0	logfile
✔	9iAH	52781	2025-09-17	2025-02-10	3.17	3.15	2.12	3.2	0.008	0.78	0.0	0.05	11.66	0.00	2.501	1.54	0.00	0.0	100.0	0.0	-1.94	0.50	0.87	5.54	3.2	0.003	0.53	0.0	0.04	13.93	0.00	2.636	4.25	1.48	3.1	96.9	0.0	-2.41	0.33	0.44	0.83	5.29	1260	170	5	0	0	0	0	logfile
✔	9N93	49158	2025-09-17	2025-02-10	2.95	3.21	2.97	3.3	0.004	0.67	0.0	0.04	13.48	0.01	2.222	9.83	0.35	7.3	92.7	0.0	0.24	0.56	0.83	3.79	3.3	0.003	0.58	0.0	0.04	16.03	0.00	2.579	6.43	2.95	5.9	94.1	0.0	0.77	0.81	0.56	0.84	3.03	5275	650	1	0	0	0	0	logfile
✔	9N95	49160	2025-09-17	2025-02-10	3.65	3.88	3.56	3.9	0.004	0.77	0.0	0.04	16.88	0.00	2.201	15.12	0.41	7.9	91.6	0.5	0.00	0.56	0.75	0.75	3.9	0.003	0.65	0.0	0.04	17.39	0.00	2.550	9.83	2.68	8.8	90.9	0.4	0.65	0.84	0.51	0.74	0.99	4559	570	1	0	0	0	0	logfile
✔	9LUo	63400	2025-09-17	2025-02-09	3.07	3.26	3.09	3.2	0.010	1.05	0.0	0.03	17.37	0.00	2.201	8.86	0.00	4.0	96.0	0.0	1.57	0.58	0.71	0.93	3.2	0.003	0.62	0.0	0.04	17.52	0.00	2.618	8.27	1.81	4.6	95.4	0.0	1.56	0.83	0.56	0.71	1.30	2540	318	3	0	0	0	0	logfile
✔	9LUN	63399	2025-09-17	2025-02-09	2.8	3.04	2.87	3.1	0.004	0.62	0.0	0.04	18.04	0.01	2.130	8.90	2.85	3.5	96.5	0.0	-1.02	0.66	0.76	2.36	3.1	0.003	0.60	0.0	0.04	17.83	0.00	2.547	5.65	3.09	3.1	96.9	0.0	0.47	0.33	0.69	0.79	1.97	7744	976	5	0	1	0	0	logfile
✔	9LUP	63401	2025-09-17	2025-02-09	2.8	3.08	—	3.1	0.003	0.58	0.0	0.04	18.08	0.01	2.104	7.65	2.73	4.0	96.0	0.0	-0.14	0.67	0.77	2.43	3.1	0.004	0.56	0.0	0.04	17.92	0.00	2.526	5.85	3.41	4.3	95.7	0.0	0.71	0.29	0.66	0.77	2.27	8081	1020	5	0	1	0	0	logfile
✔	9LUM	63398	2025-09-17	2025-02-09	2.66	2.85	2.68	2.9	0.010	1.15	0.0	0.04	16.81	0.01	2.212	4.31	1.98	3.4	96.6	0.0	1.05	0.71	0.84	3.00	2.8	0.002	0.50	0.0	0.04	16.51	0.00	2.509	3.15	1.37	3.0	97.0	0.0	1.38	0.24	0.71	0.84	3.36	6321	772	5	0	1	246	0	logfile
✘	9LUC	63394	2025-09-17	2025-02-08	3.5	3.84	3.62	3.9	0.010	1.49	2.0	0.09	17.83	0.03	2.239	8.46	11.92	2.6	97.3	0.1	-1.36	0.67	0.89	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9584	1249	7	0	0	0	0	logfile
✔	9LUB	63393	2025-09-17	2025-02-08	3.3	3.69	3.45	3.7	0.009	1.41	3.0	0.09	17.48	0.03	2.121	9.42	10.75	2.1	97.9	0.0	-0.89	0.67	0.89	2.09	3.7	0.003	0.61	0.0	0.04	16.99	0.00	2.561	5.63	2.50	1.6	98.4	0.0	3.43	1.43	0.65	0.86	1.66	10113	1326	7	0	0	0	0	logfile

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