Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9LYP	63514	2025-09-17	2025-02-20	3.6	3.97	3.62	3.7	0.004	0.88	0.0	0.05	11.36	0.01	2.150	8.36	0.00	8.1	91.9	0.0	-0.89	0.82	0.76	2.48	3.7	0.004	0.76	0.0	0.04	14.22	0.00	2.401	8.56	2.21	6.4	93.6	0.0	-0.13	1.03	0.85	0.81	2.92	4882	635	4	0	2	0	0	logfile
✔	9NF0	49341	2025-09-18	2025-02-20	3.06	2.45	—	1.4	0.005	0.77	0.0	0.04	13.40	0.00	2.054	5.78	2.97	2.7	97.3	0.0	-0.33	0.92	0.87	4.13	1.4	0.003	0.74	0.0	0.04	14.97	0.00	2.083	7.03	1.69	2.5	97.5	0.0	0.22	0.44	0.93	0.90	3.50	21344	2611	16	0	24	0	0	logfile
✔	9NEU	49336	2025-09-17	2025-02-20	2.98	3.17	2.56	3.1	0.003	0.63	0.0	0.04	14.23	0.01	2.307	7.57	0.00	7.2	92.8	0.0	-0.60	0.69	0.82	3.72	3.1	0.005	0.77	0.0	0.05	16.70	0.01	2.540	8.83	3.79	9.6	90.4	0.0	-1.35	0.91	0.68	0.84	3.76	3648	432	4	0	0	0	0	logfile
✔	9NES	49333	2025-09-17	2025-02-20	2.67	2.96	2.61	3.0	0.011	1.03	0.0	0.05	16.43	0.01	2.241	6.08	0.00	1.6	98.4	0.0	-0.70	0.65	0.87	4.74	3.0	0.003	0.57	0.0	0.04	14.75	0.01	2.504	4.84	0.88	1.6	98.4	0.0	3.11	0.31	0.60	0.86	3.34	6651	800	12	0	34	9	0	logfile
✔	9NE6	49299	2025-09-18	2025-02-19	3.11	3.37	3.20	3.4	0.004	0.89	0.0	0.06	17.44	0.01	2.433	6.19	0.00	3.5	96.5	0.0	-1.18	0.64	0.66	2.08	3.4	0.003	0.67	0.0	0.04	19.05	0.00	2.381	10.76	1.89	3.2	96.8	0.0	-0.20	0.96	0.69	0.75	1.49	16349	1923	7	51	1	0	0	logfile
✘	9NE9	49302	2025-09-18	2025-02-19	3.88	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16735	1935	7	65	3	0	0	logfile
✔	9NE7	49300	2025-09-18	2025-02-19	3.53	3.75	3.58	4.0	0.004	0.83	0.0	0.05	16.93	0.01	2.600	6.76	0.00	4.7	95.3	0.0	-1.45	0.71	0.71	1.61	3.9	0.003	0.69	0.0	0.04	18.48	0.00	2.437	10.93	1.59	3.5	96.5	0.0	-0.22	0.50	0.71	0.73	1.09	16138	1921	7	41	1	0	0	logfile
✔	9NE8	49301	2025-09-18	2025-02-19	3.6	3.85	3.72	4.0	0.005	0.92	0.0	0.06	17.12	0.01	2.484	8.88	0.18	3.8	96.2	0.0	-1.96	0.70	0.64	0.74	3.9	0.003	0.77	0.0	0.04	18.79	0.00	2.462	14.29	2.60	3.1	96.9	0.0	-0.99	0.49	0.71	0.67	0.54	16242	1921	7	46	1	0	0	logfile
✔	9LYC	63523	2025-09-17	2025-02-19	3.06	2.38	3.19	2.1	0.004	0.68	0.0	0.04	15.52	0.01	2.034	12.59	0.75	3.8	96.2	0.0	0.99	0.73	0.74	1.64	2.1	0.004	0.70	0.0	0.04	16.95	0.00	2.495	9.80	3.28	4.3	95.7	0.0	1.00	0.67	0.76	0.78	1.84	10056	1312	6	0	0	0	0	logfile
✔	9NEG	49308	2025-09-17	2025-02-19	3.17	3.80	3.19	3.6	0.008	0.88	0.0	0.04	15.89	0.00	2.202	9.12	0.00	4.9	95.1	0.0	1.47	0.64	0.84	2.82	3.6	0.003	0.63	0.0	0.04	15.50	0.00	2.433	7.63	2.27	4.2	95.8	0.0	1.88	0.49	0.61	0.84	2.61	10596	1276	11	0	36	1	0	logfile
✔	9NEi	49311	2025-09-17	2025-02-19	2.97	3.76	3.05	3.5	0.009	1.03	0.0	0.04	15.98	0.01	2.229	7.56	0.00	2.1	97.9	0.0	-1.01	0.61	0.86	3.61	3.5	0.003	0.70	0.0	0.04	15.36	0.00	2.463	7.07	1.80	0.9	99.1	0.0	3.20	0.94	0.58	0.83	3.05	7056	855	9	0	34	1	0	logfile
✔	9NEC	49305	2025-09-17	2025-02-19	3.2	3.79	3.23	3.6	0.008	0.89	0.0	0.04	15.95	0.00	2.208	8.08	0.00	3.7	96.3	0.0	1.57	0.66	0.83	3.04	3.6	0.003	0.62	0.0	0.04	15.25	0.00	2.451	6.70	1.00	3.3	96.6	0.1	1.64	0.39	0.66	0.84	3.11	10239	1287	11	0	35	1	0	logfile
✘	9NEA	49303	2025-09-18	2025-02-19	3.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16578	1936	7	57	2	0	0	logfile
✔	9LYB	63525	2025-09-17	2025-02-19	3.16	2.28	3.00	2.2	0.003	0.60	0.0	0.04	12.56	0.00	2.109	9.11	0.00	2.8	97.2	0.0	0.50	0.72	0.72	1.95	2.0	0.003	0.60	0.0	0.04	15.91	0.00	2.498	6.47	2.35	2.4	97.5	0.1	1.24	1.26	0.79	0.80	2.20	8003	1037	5	0	0	0	0	logfile
✔	9LYD	63522	2025-09-17	2025-02-19	3.66	2.79	3.59	2.8	0.004	0.81	0.0	0.04	16.60	0.01	2.188	12.83	0.17	4.0	96.0	0.0	1.24	0.72	0.74	0.54	2.8	0.003	0.79	0.0	0.04	17.29	0.00	2.526	10.57	3.63	4.6	95.2	0.1	1.41	0.41	0.72	0.73	0.46	5636	746	2	0	0	0	0	logfile
✔	9LWU	63459	2025-09-18	2025-02-17	3.5	3.70	3.50	3.8	0.006	1.10	0.0	0.06	19.56	0.01	2.176	9.77	1.93	4.3	95.1	0.6	-2.83	0.56	0.64	0.92	3.7	0.004	0.87	0.0	0.05	18.28	0.00	2.462	10.54	4.16	3.7	96.1	0.2	0.38	1.40	0.59	0.67	1.07	14120	1820	12	0	20	0	0	logfile
✔	9LX5	63466	2025-09-17	2025-02-17	3.6	3.83	3.56	3.8	0.004	0.59	0.0	0.05	17.83	0.00	2.230	7.61	4.22	11.4	88.6	0.0	-1.51	0.66	0.80	1.94	3.8	0.004	0.64	0.0	0.05	18.04	0.00	2.212	7.20	6.94	11.7	88.3	0.0	-1.77	0.27	0.66	0.80	2.21	7519	981	6	0	6	0	0	logfile
✔	9LWP	63455	2025-09-17	2025-02-16	2.93	3.16	2.99	3.2	0.002	0.50	0.0	0.04	14.80	0.00	2.104	8.20	0.95	3.2	96.6	0.2	0.93	0.54	0.73	2.99	3.2	0.003	0.53	0.0	0.04	16.04	0.00	2.574	7.32	3.79	3.5	96.4	0.1	1.02	0.33	0.55	0.74	2.81	6844	876	4	0	0	0	0	logfile
✔	9iC1	52824	2025-09-18	2025-02-14	2.73	3.54	2.82	3.4	0.003	0.56	0.0	0.04	12.84	0.00	2.160	5.86	0.62	1.9	98.1	0.0	1.02	0.73	0.77	2.61	3.4	0.003	0.61	0.0	0.04	16.17	0.01	2.291	7.65	1.79	1.8	98.2	0.0	0.64	1.93	0.67	0.73	1.43	14182	1682	6	38	2	0	0	logfile
✔	9iC0	52823	2025-09-18	2025-02-14	3.24	3.57	—	3.7	0.005	0.56	0.0	0.04	13.45	0.00	2.287	8.00	0.56	3.0	97.0	0.0	0.36	0.82	0.76	2.17	3.8	0.003	0.61	0.0	0.04	16.21	0.00	2.272	8.73	1.62	2.6	97.4	0.0	0.71	0.97	0.81	0.78	1.34	13987	1636	6	41	3	0	0	logfile

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