Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9NHL	49415	2025-09-18	2025-02-24	3.7	3.90	3.73	3.8	0.022	1.73	0.0	0.14	11.80	0.01	2.354	1.11	0.00	2.9	97.1	0.0	0.29	0.73	0.82	2.88	3.8	0.004	0.70	0.0	0.05	13.91	0.00	2.233	5.91	1.76	4.7	95.3	0.0	-0.35	0.81	0.73	0.82	2.44	15003	1659	21	0	277	0	0	logfile
✔	9NHM	49416	2025-09-18	2025-02-24	4.0	4.31	4.11	4.2	0.021	1.73	0.0	0.14	11.90	0.01	2.201	1.26	0.00	2.8	97.2	0.0	0.34	0.73	0.80	—	4.2	0.004	0.68	0.0	0.04	12.85	0.00	2.477	7.21	1.30	3.7	96.3	0.0	0.50	0.81	0.74	0.81	—	14897	1640	20	0	283	0	0	logfile
✔	9NH4	49400	2025-09-17	2025-02-23	3.9	3.57	3.75	4.1	0.005	0.89	0.0	0.06	13.84	0.01	2.216	20.84	0.00	7.7	92.3	0.0	-2.37	0.63	0.74	2.07	4.1	0.004	0.95	2.0	0.05	16.09	0.00	1.514	10.69	2.41	6.4	93.5	0.1	-1.34	0.68	0.66	0.80	2.12	11320	1375	10	0	5	0	0	logfile
✔	9NGQ	49390	2025-09-18	2025-02-22	3.8	3.32	3.60	3.7	0.010	0.78	0.0	0.05	14.01	0.01	2.202	8.20	0.00	4.7	95.3	0.0	-1.59	0.69	0.84	2.47	3.7	0.004	0.56	0.0	0.05	15.68	0.00	2.533	6.08	2.04	3.9	96.1	0.1	-0.01	0.40	0.70	0.85	2.08	12551	1535	10	0	11	0	0	logfile
✔	9NGS	49392	2025-09-18	2025-02-22	4.2	3.61	4.05	4.1	0.006	0.87	0.0	0.06	13.91	0.01	2.305	4.04	0.00	4.9	95.1	0.0	-1.32	0.68	0.82	—	4.1	0.003	0.61	0.0	0.05	13.88	0.00	2.536	6.60	0.00	3.9	96.1	0.0	0.10	0.98	0.68	0.82	—	12549	1535	10	0	9	0	0	logfile
✔	9NGi	49385	2025-09-18	2025-02-22	4.3	3.96	4.11	3.9	0.006	0.92	0.0	0.06	14.49	0.01	2.269	11.27	0.00	5.5	94.5	0.0	-1.25	0.64	0.76	—	3.9	0.003	0.64	0.0	0.05	13.87	0.00	2.537	9.76	0.00	5.3	94.7	0.0	-0.17	1.07	0.64	0.75	—	12729	1550	10	0	14	0	0	logfile
✔	9NGG	49384	2025-09-18	2025-02-22	3.6	3.36	3.58	3.7	0.003	0.64	0.0	0.05	14.56	0.00	2.155	4.54	0.00	5.6	94.4	0.0	0.07	0.66	0.80	2.95	3.7	0.004	0.58	0.0	0.05	15.91	0.00	2.595	5.34	0.07	5.2	94.8	0.0	1.01	0.38	0.67	0.82	3.13	12617	1535	8	0	7	0	0	logfile
✔	9NGR	49391	2025-09-18	2025-02-22	3.8	3.32	3.60	3.7	0.019	0.84	0.0	0.06	14.03	0.01	2.395	7.92	0.36	4.9	95.1	0.0	-1.72	0.69	0.84	2.37	3.7	0.004	0.59	0.0	0.05	15.76	0.00	2.525	5.84	2.18	3.9	96.0	0.1	0.00	0.42	0.70	0.85	2.14	12551	1535	10	0	11	0	0	logfile
✔	9NGF	49383	2025-09-18	2025-02-22	3.4	2.78	3.36	3.4	0.004	0.72	0.0	0.05	13.59	0.00	2.311	6.79	0.00	5.6	94.4	0.0	-0.65	0.63	0.81	3.97	3.4	0.003	0.57	0.0	0.05	14.74	0.00	2.591	4.88	1.30	5.2	94.8	0.0	0.60	0.38	0.63	0.83	3.63	12585	1535	6	0	5	0	0	logfile
✔	9NFK	49368	2025-09-17	2025-02-21	3.99	4.16	3.98	4.1	0.004	0.57	0.0	0.04	16.99	0.00	1.971	17.50	3.37	5.2	94.8	0.0	1.45	0.61	0.69	0.80	4.1	0.004	0.76	0.0	0.04	17.54	0.00	2.579	15.65	3.37	4.2	95.8	0.0	1.32	1.94	0.62	0.69	0.80	6975	898	1	0	0	0	0	logfile
✔	9iHC	52864	2025-09-17	2025-02-21	2.95	3.58	3.00	3.4	0.003	0.58	0.0	0.04	14.94	0.00	2.349	5.33	0.62	2.0	98.0	0.0	0.55	0.84	0.88	3.98	3.4	0.003	0.53	0.0	0.04	15.90	0.00	2.607	5.10	2.08	1.8	98.2	0.0	1.23	0.35	0.83	0.87	4.01	4288	560	3	0	0	0	0	logfile
✔	9NFM	49370	2025-09-17	2025-02-21	3.89	4.33	4.05	4.2	0.006	0.68	0.0	0.05	17.42	0.00	2.021	16.88	2.76	6.0	94.0	0.0	0.38	0.61	0.64	0.78	4.2	0.003	0.79	0.0	0.04	17.93	0.00	2.423	15.14	3.29	5.0	95.0	0.0	0.42	1.71	0.65	0.77	0.90	8850	1142	2	0	1	0	0	logfile
✔	9iHE	52866	2025-09-19	2025-02-21	2.95	3.33	3.03	3.2	0.008	0.56	0.0	0.04	24.94	0.00	2.129	7.11	1.43	2.1	97.9	0.0	1.02	0.77	0.84	2.74	3.2	0.005	0.72	1.0	0.04	24.86	0.00	2.248	5.95	2.55	2.1	97.9	0.1	1.53	0.19	0.75	0.87	2.62	21069	1870	16	290	8	0	0	logfile
✔	9iHF	52870	2025-09-19	2025-02-21	3.16	3.00	—	3.3	0.003	0.53	0.0	0.04	23.77	0.00	2.195	6.98	1.58	2.2	97.8	0.0	1.56	0.84	0.85	2.53	3.3	0.004	0.55	0.0	0.04	23.28	0.00	2.494	5.46	2.06	2.2	97.8	0.0	1.82	0.22	0.86	0.89	2.63	25213	2424	21	266	21	0	0	logfile
✔	9NFL	49369	2025-09-17	2025-02-21	4.02	4.21	4.07	4.1	0.004	0.65	0.0	0.04	16.86	0.00	1.984	22.17	2.04	6.2	93.8	0.0	-0.12	0.61	0.70	—	4.1	0.003	0.67	0.0	0.04	14.57	0.00	2.468	12.09	0.00	3.3	96.6	0.1	0.22	0.73	0.60	0.69	—	6936	893	1	0	0	0	0	logfile
✔	9NFi	49366	2025-09-17	2025-02-21	3.79	4.14	3.91	4.0	0.003	0.62	0.0	0.04	16.38	0.00	2.046	15.18	1.19	6.4	93.6	0.0	0.44	0.68	0.71	0.38	4.0	0.003	0.70	0.0	0.04	17.47	0.00	2.570	11.11	3.56	4.5	95.5	0.0	0.77	0.62	0.68	0.73	0.36	8664	1116	1	0	0	0	0	logfile
✔	9NGC	49382	2025-09-18	2025-02-21	2.8	3.25	2.96	3.2	0.004	0.73	0.0	0.05	11.95	0.01	2.227	2.33	0.00	3.2	96.8	0.0	-0.75	0.57	0.82	4.24	3.2	0.002	0.49	0.0	0.04	14.87	0.00	2.610	3.64	1.88	3.5	96.5	0.0	0.71	1.27	0.54	0.81	3.54	12722	1550	10	0	7	0	0	logfile
✔	9iHD	52865	2025-09-18	2025-02-21	2.97	3.31	3.04	3.2	0.005	0.59	0.0	0.04	26.62	0.01	2.177	6.76	2.78	1.9	98.1	0.0	1.52	0.75	0.83	2.60	3.2	0.006	0.61	0.0	0.04	26.65	0.00	2.139	5.46	2.69	2.2	97.8	0.0	1.74	0.17	0.77	0.89	2.66	16508	1313	13	290	4	0	0	logfile
✔	9NFJ	49367	2025-09-17	2025-02-21	3.98	4.14	3.93	4.1	0.003	0.66	0.0	0.04	18.28	0.00	2.111	13.97	3.01	4.7	95.3	0.0	0.93	0.69	0.76	0.56	4.0	0.003	0.70	0.0	0.04	18.73	0.00	2.511	12.66	3.98	4.3	95.7	0.0	1.22	0.37	0.69	0.76	0.56	8698	1122	1	0	0	0	0	logfile
✔	9LYP	63514	2025-09-17	2025-02-20	3.6	3.97	3.62	3.7	0.004	0.88	0.0	0.05	11.36	0.01	2.150	8.36	0.00	8.1	91.9	0.0	-0.89	0.82	0.76	2.48	3.7	0.004	0.76	0.0	0.04	14.22	0.00	2.401	8.56	2.21	6.4	93.6	0.0	-0.13	1.03	0.85	0.81	2.92	4882	635	4	0	2	0	0	logfile

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