Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9QB2	52983	2025-09-18	2025-02-28	3.0	2.84	3.05	3.1	0.009	1.24	0.0	0.09	18.53	0.01	1.439	1.13	0.27	1.8	98.2	0.0	-1.61	0.64	0.75	3.79	3.0	0.004	0.63	0.0	0.04	19.92	0.00	2.464	6.37	2.03	2.1	97.9	0.0	-0.17	1.31	0.72	0.83	3.49	17807	1674	11	207	0	0	0	logfile
✔	9M2H	63585	2025-09-17	2025-02-27	3.4	3.63	3.49	3.6	0.011	1.21	1.0	0.07	10.75	0.01	2.284	2.76	0.00	7.0	92.7	0.2	-6.52	0.59	0.79	4.05	3.6	0.004	0.63	0.0	0.04	14.18	0.00	2.564	3.64	2.53	4.4	95.6	0.0	-2.36	0.57	0.57	0.80	2.05	3453	431	2	0	1	0	0	logfile
✔	9QA6	52972	2025-09-17	2025-02-27	2.81	3.39	2.68	3.2	0.008	0.88	0.0	0.05	15.06	0.01	2.022	9.59	5.01	2.6	97.4	0.0	-0.08	0.83	0.88	4.99	3.2	0.003	0.57	0.0	0.04	14.86	0.00	2.007	6.32	1.85	2.6	97.4	0.0	0.18	0.86	0.83	0.88	4.55	7043	845	2	0	11	151	0	logfile
✔	9NJR	49488	2025-09-18	2025-02-27	2.7	3.40	2.80	3.3	0.004	0.65	0.0	0.05	14.45	0.00	2.014	13.45	0.20	2.8	97.2	0.0	-0.15	0.66	0.77	2.13	3.3	0.003	0.65	0.0	0.04	16.62	0.00	1.957	9.96	2.30	1.9	98.1	0.0	0.52	0.96	0.63	0.77	1.88	13863	1776	9	0	6	0	0	logfile
✔	9NJK	49485	2025-09-18	2025-02-27	3.37	4.19	3.41	3.8	0.003	0.62	0.0	0.04	13.38	0.00	2.038	11.30	0.07	1.7	98.3	0.0	0.69	0.76	0.77	1.14	3.8	0.007	0.84	0.0	0.05	15.19	0.00	1.835	13.04	1.16	3.8	96.2	0.0	0.13	0.94	0.77	0.80	1.35	13780	1789	10	0	8	0	0	logfile
✔	9M2F	63584	2025-09-17	2025-02-27	2.93	3.59	3.11	3.4	0.003	0.69	0.0	0.04	17.25	0.00	2.072	14.23	0.31	5.4	94.6	0.0	-0.34	0.70	0.82	2.29	3.5	0.006	0.80	0.0	0.05	18.17	0.00	2.445	11.91	3.77	7.2	92.7	0.1	-0.50	0.43	0.65	0.84	2.44	8935	1157	7	0	1	0	0	logfile
✔	9M1H	63571	2025-09-17	2025-02-26	2.55	2.99	2.64	2.9	0.010	0.89	3.0	0.07	10.11	0.01	2.162	6.35	1.62	3.7	96.3	0.0	-1.64	0.53	0.71	3.49	2.9	0.003	0.61	0.0	0.04	15.47	0.00	2.290	5.71	2.42	3.7	96.3	0.0	1.33	1.43	0.59	0.83	3.73	7055	910	5	0	1	1	0	logfile
✔	9Q96	52919	2025-09-18	2025-02-26	4.6	4.44	4.58	4.1	0.031	2.83	326.0	0.20	18.14	0.02	1.495	10.09	0.00	10.8	86.7	2.5	-4.05	0.81	0.71	—	4.2	0.007	1.10	0.0	0.05	18.46	0.00	2.392	8.49	0.00	20.9	78.0	1.1	-3.58	1.59	0.79	0.73	—	19633	3621	8	87	0	0	0	logfile
✔	9M1o	63578	2025-09-17	2025-02-26	2.49	3.20	2.69	3.0	0.004	0.56	0.0	0.04	17.14	0.00	2.139	7.59	0.51	3.2	96.8	0.0	0.68	0.76	0.88	3.81	3.0	0.012	0.66	0.0	0.04	17.66	0.00	2.479	7.09	2.44	3.9	96.1	0.0	0.68	1.08	0.66	0.85	3.72	9085	1164	7	0	1	0	0	logfile
✔	9M0S	63562	2025-09-17	2025-02-25	3.5	3.73	3.47	3.7	0.010	1.18	0.0	0.07	13.21	0.01	2.279	5.66	0.00	3.3	96.7	0.0	-3.69	0.46	0.77	2.61	3.7	0.004	0.64	0.0	0.04	15.36	0.00	2.520	9.14	3.01	2.6	97.4	0.0	1.13	0.44	0.42	0.75	1.21	3413	424	2	0	1	0	0	logfile
✔	9M0R	63561	2025-09-17	2025-02-25	2.47	3.20	2.68	3.1	0.004	0.59	0.0	0.04	16.77	0.00	2.528	7.42	2.57	4.5	95.5	0.0	0.40	0.73	0.85	3.59	3.1	0.003	0.60	0.0	0.04	17.21	0.00	2.519	6.98	3.81	4.5	95.5	0.0	0.39	0.37	0.62	0.82	3.46	9020	1160	7	0	1	0	0	logfile
✔	9Ni9	49457	2025-09-18	2025-02-25	3.8	4.07	3.78	4.0	0.021	1.73	0.0	0.13	11.71	0.01	2.174	1.47	0.00	3.0	97.0	0.0	0.07	0.73	0.81	2.61	3.9	0.006	0.77	0.0	0.05	13.80	0.00	2.328	7.58	1.63	5.5	94.5	0.0	-0.40	0.81	0.74	0.83	1.96	14956	1660	19	0	277	0	0	logfile
✔	9NHK	49414	2025-09-18	2025-02-24	4.1	4.16	3.85	4.0	0.022	1.74	0.0	0.14	11.30	0.01	2.358	0.91	0.00	3.1	96.9	0.0	0.69	0.73	0.83	—	4.0	0.004	0.69	0.0	0.04	11.68	0.00	2.484	6.39	0.00	4.8	95.2	0.0	0.46	1.41	0.73	0.83	—	14953	1641	19	0	287	0	0	logfile
✔	9NHo	49418	2025-09-18	2025-02-24	3.8	4.06	3.83	4.0	0.021	1.73	0.0	0.14	11.40	0.01	2.280	0.71	0.27	2.8	97.2	0.0	0.80	0.74	0.78	2.10	4.0	0.003	0.69	0.0	0.04	13.15	0.00	2.518	6.71	1.24	4.3	95.7	0.0	0.24	0.89	0.74	0.78	1.71	14784	1635	21	0	276	0	0	logfile
✔	9NHN	49417	2025-09-18	2025-02-24	3.9	4.19	4.01	4.1	0.022	1.74	0.0	0.14	11.41	0.01	2.332	1.45	0.00	3.6	96.4	0.0	0.46	0.73	0.80	2.02	4.1	0.003	0.73	0.0	0.05	13.58	0.00	2.457	6.79	1.42	4.9	95.1	0.0	0.07	0.85	0.73	0.81	2.07	15064	1664	20	0	281	0	0	logfile
✔	9NHL	49415	2025-09-18	2025-02-24	3.7	3.90	3.73	3.8	0.022	1.73	0.0	0.14	11.80	0.01	2.354	1.11	0.00	2.9	97.1	0.0	0.29	0.73	0.82	2.88	3.8	0.004	0.70	0.0	0.05	13.91	0.00	2.233	5.91	1.76	4.7	95.3	0.0	-0.35	0.81	0.73	0.82	2.44	15003	1659	21	0	277	0	0	logfile
✔	9NHi	49412	2025-09-18	2025-02-24	3.1	3.40	3.16	3.4	0.005	0.99	0.0	0.06	11.53	0.01	2.249	0.90	0.00	2.1	97.9	0.0	0.59	0.73	0.84	3.60	3.3	0.003	0.61	0.0	0.04	12.62	0.00	2.477	4.68	1.50	3.3	96.7	0.0	0.31	0.65	0.74	0.85	3.16	15028	1636	26	0	283	0	0	logfile
✔	9NHM	49416	2025-09-18	2025-02-24	4.0	4.31	4.11	4.2	0.021	1.73	0.0	0.14	11.90	0.01	2.201	1.26	0.00	2.8	97.2	0.0	0.34	0.73	0.80	—	4.2	0.004	0.68	0.0	0.04	12.85	0.00	2.477	7.21	1.30	3.7	96.3	0.0	0.50	0.81	0.74	0.81	—	14897	1640	20	0	283	0	0	logfile
✔	9M0D	63543	2025-09-17	2025-02-24	3.41	3.65	3.38	3.6	0.005	0.66	0.0	0.04	12.64	0.01	2.064	6.57	0.58	6.0	94.0	0.0	-1.04	0.64	0.74	2.91	3.6	0.006	0.69	0.0	0.04	13.18	0.00	2.494	7.95	5.56	9.7	90.2	0.1	-0.55	0.93	0.67	0.80	2.56	6312	1044	4	0	0	0	0	logfile
✔	9NHJ	49413	2025-09-18	2025-02-24	3.04	3.30	3.11	3.2	0.005	1.03	0.0	0.06	11.82	0.01	2.249	0.84	0.00	2.6	97.4	0.0	0.51	0.71	0.76	3.19	3.2	0.005	0.69	0.0	0.05	12.73	0.00	2.467	6.28	0.87	4.2	95.8	0.0	-0.08	0.66	0.74	0.80	2.69	15437	1684	24	0	297	0	0	logfile

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