Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9NoR	49608	2025-09-18	2025-03-10	3.4	2.47	—	3.5	0.004	0.68	0.0	0.05	17.33	0.00	1.892	8.48	1.91	2.9	97.1	0.0	0.50	0.74	0.77	1.41	3.5	0.003	0.65	0.0	0.04	17.51	0.00	2.520	7.48	4.84	2.8	97.2	0.0	0.72	0.31	0.73	0.79	1.36	12555	1565	4	0	16	0	0	logfile
✔	9NoS	49612	2025-09-18	2025-03-10	3.5	2.57	—	3.6	0.003	0.66	0.0	0.05	17.37	0.00	2.528	7.96	2.27	2.9	97.1	0.0	0.50	0.76	0.78	1.55	3.6	0.003	0.63	0.0	0.04	17.44	0.00	2.551	7.00	4.33	2.6	97.4	0.0	0.76	1.20	0.75	0.78	1.27	12555	1565	4	0	16	0	0	logfile
✔	9QE7	53049	2025-09-17	2025-03-07	4.4	2.59	4.17	4.5	0.003	0.82	0.0	0.05	13.42	0.00	2.043	29.46	0.00	10.8	88.9	0.3	-3.15	0.73	0.61	—	2.1	0.004	0.87	0.0	0.06	13.04	0.00	2.453	25.68	0.00	11.7	88.0	0.3	-3.92	1.78	0.74	0.59	—	10826	1483	1	0	0	0	0	logfile
✔	9No2	49592	2025-09-17	2025-03-07	3.05	3.28	3.05	3.3	0.003	0.62	0.0	0.05	13.60	0.00	2.181	4.67	0.00	5.6	94.4	0.0	-0.39	0.67	0.78	3.00	3.3	0.002	0.53	0.0	0.04	16.07	0.00	2.550	4.30	2.08	5.6	94.4	0.0	0.18	0.32	0.62	0.77	2.58	11996	1556	4	0	0	0	0	logfile
✔	9M5Q	63647	2025-09-17	2025-03-06	3.3	3.34	2.64	3.6	0.009	1.18	0.0	0.07	11.53	0.00	2.306	0.48	0.24	9.9	89.7	0.4	-2.27	0.47	0.68	6.52	3.6	0.004	0.60	0.0	0.05	16.27	0.00	2.239	8.73	3.10	12.4	87.4	0.2	-2.60	1.33	0.48	0.72	5.48	8421	567	21	0	0	0	4263	logfile
✔	9NNF	49573	2025-09-17	2025-03-05	3.8	3.84	3.63	3.9	0.004	0.72	0.0	0.04	12.25	0.01	2.553	3.17	0.00	3.3	96.7	0.0	0.39	0.67	0.82	3.05	3.9	0.003	0.60	0.0	0.04	16.31	0.00	2.508	8.17	2.35	4.1	95.9	0.0	1.23	1.58	0.70	0.84	2.20	4185	526	4	0	0	0	0	logfile
✔	9M54	63637	2025-09-17	2025-03-05	3.24	4.13	3.45	3.9	0.005	0.81	0.0	0.05	18.16	0.01	2.166	12.97	1.14	5.6	94.4	0.0	-0.80	0.71	0.79	1.78	3.9	0.004	0.90	0.0	0.05	17.98	0.00	2.350	16.29	3.54	5.3	94.7	0.0	-0.49	1.90	0.69	0.84	1.83	8989	1162	7	0	1	0	0	logfile
✔	9QBJ	53000	2025-09-18	2025-03-03	3.2	3.90	3.35	3.6	0.003	0.75	0.0	0.05	16.68	0.01	2.172	7.79	0.24	2.6	97.4	0.0	0.64	0.82	0.79	1.92	3.6	0.004	0.66	0.0	0.04	16.30	0.00	2.353	9.35	2.96	3.3	96.7	0.0	1.14	1.03	0.85	0.86	1.73	15600	1997	10	0	4	0	0	logfile
✔	9NLX	49525	2025-09-18	2025-03-03	3.2	3.64	3.07	3.4	0.004	0.66	0.0	0.05	26.03	0.00	2.291	7.18	1.65	3.6	96.4	0.0	0.97	0.89	0.86	3.50	3.4	0.002	0.53	0.0	0.03	23.87	0.00	2.377	4.48	1.55	1.8	98.2	0.0	2.41	1.01	0.90	0.87	3.14	19770	1443	6	423	0	0	0	logfile
✔	9QBG	52998	2025-09-17	2025-03-02	3.6	4.53	3.59	4.0	0.021	1.86	0.0	0.10	11.30	0.01	2.229	1.69	0.00	2.6	97.4	0.0	0.66	0.85	0.74	0.72	4.0	0.003	0.60	0.0	0.04	13.61	0.00	2.423	4.04	0.46	6.4	93.6	0.0	0.64	3.00	0.85	0.74	0.72	7684	508	1	0	0	0	3767	logfile
✔	9NL2	49515	2025-09-17	2025-03-02	3.2	3.13	3.18	3.2	0.004	0.89	0.0	0.06	23.57	0.00	1.829	7.77	0.30	7.4	92.0	0.5	0.18	0.76	0.79	2.15	3.1	0.005	0.92	0.0	0.06	23.77	0.00	1.897	10.09	3.25	5.8	93.8	0.4	0.42	1.13	0.77	0.82	1.92	12138	1107	6	156	6	0	0	logfile
✔	9NL3	49516	2025-09-17	2025-03-02	3.2	3.10	3.17	3.1	0.005	1.06	0.0	0.06	24.60	0.01	1.847	8.10	0.63	6.7	92.8	0.5	-1.43	0.77	0.82	2.25	3.1	0.003	0.81	0.0	0.04	23.83	0.00	2.000	7.47	1.99	4.8	95.0	0.2	0.19	0.43	0.76	0.83	2.12	11939	1079	6	156	6	0	0	logfile
✔	9QBF	52997	2025-09-17	2025-03-02	3.8	4.89	3.83	4.1	0.024	2.17	1.0	0.11	11.59	0.01	2.219	4.45	0.00	4.2	95.8	0.0	-0.09	0.80	0.64	0.72	4.1	0.003	0.67	0.0	0.04	14.56	0.00	2.414	12.84	1.39	7.4	92.6	0.0	-1.56	0.93	0.81	0.66	-0.07	7628	504	1	0	0	0	3736	logfile
✔	9NL4	49517	2025-09-17	2025-03-02	4.6	6.06	4.63	4.1	0.008	1.14	0.0	0.09	21.03	0.01	1.621	24.68	0.00	13.1	86.0	0.8	-2.58	0.90	0.79	—	4.1	0.004	1.00	0.0	0.06	20.50	0.00	2.338	14.14	0.00	7.4	92.1	0.5	-0.34	1.32	0.91	0.85	—	10748	1107	6	92	4	0	0	logfile
✔	9QBB	52996	2025-09-19	2025-03-01	3.3	3.63	—	3.5	0.004	0.72	0.0	0.05	12.62	0.00	2.433	10.93	0.19	4.5	95.5	0.0	-0.48	0.63	0.79	2.14	3.5	0.004	0.69	0.0	0.04	15.10	0.00	2.419	10.18	1.89	4.9	95.1	0.0	-0.07	0.71	0.64	0.81	1.93	23257	2911	1	0	0	0	0	logfile
✔	9QB2	52983	2025-09-18	2025-02-28	3.0	2.84	3.05	3.1	0.009	1.24	0.0	0.09	18.53	0.01	1.439	1.13	0.27	1.8	98.2	0.0	-1.61	0.64	0.75	3.79	3.0	0.004	0.63	0.0	0.04	19.92	0.00	2.464	6.37	2.03	2.1	97.9	0.0	-0.17	1.31	0.72	0.83	3.49	17807	1674	11	207	0	0	0	logfile
✔	9QAJ	52975	2025-09-17	2025-02-28	2.95	3.99	3.07	3.3	0.005	0.58	0.0	0.03	28.27	0.00	2.149	9.35	0.32	2.5	97.5	0.0	2.60	0.92	0.89	2.24	3.3	0.006	0.64	0.0	0.03	28.51	0.00	2.457	8.57	2.05	3.4	96.6	0.0	3.03	0.27	0.91	0.91	2.19	12144	796	14	290	0	0	0	logfile
✔	9QB8	52990	2025-09-19	2025-02-28	3.4	3.61	—	3.4	0.005	0.74	0.0	0.05	17.11	0.01	2.227	10.86	0.44	3.7	96.3	0.0	0.16	0.84	0.83	2.07	3.4	0.004	0.59	0.0	0.04	16.98	0.00	2.302	7.52	2.01	3.4	96.6	0.0	0.98	0.42	0.85	0.84	1.86	22339	2803	2	0	1	0	0	logfile
✘	9QAY	52979	2025-09-18	2025-02-28	3.8	4.25	3.82	3.2	0.009	1.23	2.0	0.08	21.97	0.01	1.280	6.90	0.09	6.2	93.4	0.4	-3.03	0.83	0.76	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15471	1247	6	260	0	0	0	logfile
✔	9QAX	52978	2025-09-18	2025-02-28	3.3	3.80	3.34	3.0	0.009	1.20	1.0	0.08	22.04	0.01	1.305	6.76	0.09	6.3	93.3	0.4	-3.15	0.82	0.77	0.94	3.2	0.003	0.65	0.0	0.03	22.26	0.00	2.143	8.90	0.93	3.8	96.0	0.2	0.39	1.47	0.81	0.74	1.19	15471	1247	6	260	0	0	0	logfile

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