Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9QH0	53151	2025-09-18	2025-03-14	2.52	3.21	2.61	3.0	0.005	0.70	0.0	0.05	14.00	0.02	2.199	7.21	0.00	2.6	97.4	0.0	0.54	0.77	0.86	3.35	3.1	0.003	0.53	0.0	0.04	16.04	0.00	2.503	5.01	0.95	2.0	98.0	0.0	2.46	0.72	0.74	0.86	3.68	12946	1702	6	0	0	7	0	logfile
✔	9NR8	49725	2025-09-18	2025-03-14	3.53	3.82	3.59	3.8	0.004	0.72	1.0	0.05	17.14	0.01	1.787	4.85	0.15	5.5	94.5	0.0	-0.94	0.72	0.77	2.04	3.8	0.004	0.67	0.0	0.04	16.01	0.00	2.442	6.23	2.39	6.2	93.8	0.0	-0.52	0.44	0.71	0.79	2.26	14576	1958	18	0	22	0	0	logfile
✔	9NR7	49724	2025-09-18	2025-03-14	4.18	4.40	4.16	4.3	0.003	0.82	0.0	0.05	12.99	0.00	2.228	6.44	0.07	5.8	94.2	0.0	-1.52	0.65	0.65	—	4.3	0.004	0.72	0.0	0.04	13.12	0.00	2.475	13.57	0.00	6.3	93.7	0.0	-0.80	0.72	0.68	0.71	—	15553	1958	12	0	235	0	0	logfile
✔	9NRA	49727	2025-09-18	2025-03-14	4.18	4.45	4.22	4.4	0.004	0.89	0.0	0.05	13.30	0.00	2.160	7.54	0.00	5.8	94.2	0.0	-1.74	0.67	0.70	—	4.4	0.005	0.77	0.0	0.04	13.33	0.00	2.445	15.26	0.00	6.6	93.3	0.1	-0.59	1.96	0.70	0.76	—	15598	1964	12	0	235	0	0	logfile
✔	9QH3	53153	2025-09-19	2025-03-14	2.4	3.18	2.71	3.1	0.005	0.83	0.0	0.05	15.21	0.04	2.182	5.20	0.37	3.7	96.3	0.0	-1.39	0.70	0.81	3.72	3.1	0.003	0.56	0.0	0.04	16.00	0.00	2.379	2.46	0.67	2.4	97.6	0.0	1.90	0.57	0.71	0.83	4.30	25636	1684	10	3	0	45	12816	logfile
✔	9MAU	63758	2025-09-17	2025-03-14	2.87	3.31	2.79	3.3	0.010	1.39	0.0	0.09	12.11	0.01	2.403	4.62	0.00	2.2	97.8	0.0	-0.76	0.43	0.69	2.53	3.3	0.003	0.59	0.0	0.04	15.09	0.00	2.609	4.87	1.46	1.8	98.2	0.0	2.26	1.07	0.47	0.73	2.05	3874	506	1	0	0	0	0	logfile
✔	9NR9	49726	2025-09-18	2025-03-14	4.22	4.46	4.22	4.3	0.003	0.86	0.0	0.05	12.70	0.00	2.281	6.21	0.00	5.2	94.8	0.0	-1.29	0.69	0.72	—	4.3	0.003	0.67	0.0	0.04	12.77	0.00	2.461	10.09	0.08	5.1	94.9	0.0	0.54	0.54	0.70	0.74	—	13679	1865	10	0	4	0	0	logfile
✔	9M9V	63741	2025-09-17	2025-03-13	3.31	3.80	3.40	3.7	0.012	1.40	2.0	0.09	12.13	0.01	2.402	2.78	0.51	2.3	97.7	0.0	-0.35	0.53	0.74	2.36	3.7	0.003	0.63	0.0	0.04	15.88	0.00	2.346	7.69	1.78	2.5	97.3	0.2	2.67	1.99	0.52	0.75	1.50	3765	496	2	0	1	0	0	logfile
✔	9NQU	49676	2025-09-18	2025-03-13	3.16	3.46	—	3.1	0.005	0.79	0.0	0.07	28.78	0.00	2.012	38.25	1.83	7.7	92.3	0.0	0.16	0.78	0.70	0.48	3.1	0.005	0.83	1.0	0.04	28.03	0.00	2.010	12.21	3.95	4.6	95.4	0.0	1.27	1.07	0.81	0.74	0.65	17358	1229	12	370	3	0	0	logfile
✔	9QG1	53127	2025-09-19	2025-03-13	3.3	3.70	3.41	3.6	0.004	0.67	0.0	0.05	19.11	0.00	1.372	6.82	3.69	4.3	95.0	0.7	1.97	0.67	0.65	1.12	3.6	0.003	0.55	0.0	0.04	18.74	0.00	1.237	6.20	2.70	3.0	97.0	0.0	2.95	1.05	0.75	0.79	1.62	21968	2736	32	0	48	0	0	logfile
✔	9M9Y	63744	2025-09-17	2025-03-13	3.04	3.54	3.11	3.5	0.009	1.35	1.0	0.09	10.66	0.01	2.386	7.64	0.00	3.0	97.0	0.0	0.31	0.50	0.77	1.76	3.5	0.003	0.59	0.0	0.04	13.69	0.00	2.584	4.83	1.77	1.3	98.7	0.0	2.88	1.39	0.47	0.75	1.33	3668	475	1	0	0	0	0	logfile
✔	9M84	63701	2025-09-19	2025-03-11	3.61	3.95	3.79	3.8	0.004	0.78	0.0	0.04	17.91	0.01	1.876	6.19	0.41	7.6	92.3	0.1	-1.95	0.74	0.67	0.95	3.8	0.003	0.74	0.0	0.05	18.79	0.01	1.972	13.04	2.31	5.3	94.7	0.0	-1.19	0.99	0.74	0.66	0.77	24018	2931	8	58	3	0	0	logfile
✘	9NPY	49636	2025-09-19	2025-03-11	2.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25171	1877	36	483	32	827	0	logfile
✔	9NoR	49608	2025-09-18	2025-03-10	3.4	2.47	—	3.5	0.004	0.68	0.0	0.05	17.33	0.00	1.892	8.48	1.91	2.9	97.1	0.0	0.50	0.74	0.77	1.41	3.5	0.003	0.65	0.0	0.04	17.51	0.00	2.520	7.48	4.84	2.8	97.2	0.0	0.72	0.31	0.73	0.79	1.36	12555	1565	4	0	16	0	0	logfile
✔	9NoS	49612	2025-09-18	2025-03-10	3.5	2.57	—	3.6	0.003	0.66	0.0	0.05	17.37	0.00	2.528	7.96	2.27	2.9	97.1	0.0	0.50	0.76	0.78	1.55	3.6	0.003	0.63	0.0	0.04	17.44	0.00	2.551	7.00	4.33	2.6	97.4	0.0	0.76	1.20	0.75	0.78	1.27	12555	1565	4	0	16	0	0	logfile
✔	9NoY	49621	2025-09-17	2025-03-10	3.7	3.83	3.57	3.8	0.003	0.61	0.0	0.04	17.43	0.01	2.625	9.70	1.33	2.0	98.0	0.0	1.89	0.48	0.81	1.26	3.8	0.003	0.70	0.0	0.04	18.09	0.01	2.601	9.70	5.78	2.4	97.6	0.0	2.76	0.51	0.50	0.80	1.98	2031	257	1	0	0	0	0	logfile
✔	9NoW	49619	2025-09-17	2025-03-10	3.1	3.59	3.24	3.6	0.004	0.65	0.0	0.05	17.10	0.01	2.420	7.76	0.97	1.4	98.6	0.0	0.46	0.73	0.83	2.70	3.5	0.004	0.95	1.0	0.04	17.13	0.00	2.314	6.90	4.14	1.5	98.5	0.0	0.87	0.63	0.69	0.83	2.38	7624	936	4	0	15	0	0	logfile
✔	9NoU	49617	2025-09-17	2025-03-10	2.8	3.00	2.81	3.0	0.004	0.69	0.0	0.05	17.49	0.00	2.394	6.80	1.24	1.1	98.9	0.0	0.16	0.65	0.84	3.03	3.0	0.003	0.59	0.0	0.05	17.62	0.00	2.489	6.32	4.08	1.0	99.0	0.0	0.99	1.00	0.68	0.86	3.08	7519	923	4	0	15	0	0	logfile
✔	9NoV	49618	2025-09-17	2025-03-10	3.3	3.72	3.42	3.7	0.005	0.57	0.0	0.04	17.38	0.00	2.451	5.36	3.05	1.4	98.6	0.0	0.57	0.72	0.86	2.75	3.7	0.003	0.51	0.0	0.04	17.00	0.00	2.508	5.43	2.44	1.0	99.0	0.0	0.89	0.26	0.72	0.85	2.61	7647	936	5	0	17	0	0	logfile
✔	9M7o	62355	2025-09-17	2025-03-10	4.14	3.30	4.07	3.7	0.006	0.77	0.0	0.04	10.26	0.00	2.128	7.00	0.00	2.1	97.9	0.0	0.47	0.68	0.60	—	3.2	0.003	0.72	0.0	0.05	13.41	0.00	2.374	9.00	0.10	2.9	97.0	0.1	0.68	1.61	0.72	0.71	—	9327	1179	5	0	0	0	0	logfile

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