Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9i7S	52660	2025-09-17	2025-02-01	3.2	3.40	3.19	3.4	0.006	0.78	0.0	0.05	17.29	0.01	2.160	4.34	0.54	1.2	98.8	0.0	1.54	0.52	0.68	4.22	3.4	0.003	0.59	0.0	0.04	14.64	0.00	2.407	5.44	1.44	1.9	98.1	0.0	2.62	1.58	0.63	0.86	3.45	11338	1358	18	0	19	0	0	logfile
✔	9i7P	52658	2025-09-17	2025-01-31	3.2	3.40	3.16	3.4	0.007	0.84	0.0	0.05	21.10	0.02	2.131	5.31	0.24	1.6	98.4	0.0	0.60	0.59	0.80	4.56	3.4	0.003	0.60	0.0	0.04	15.47	0.00	2.410	5.71	2.06	1.2	98.8	0.0	1.98	0.54	0.62	0.85	3.80	8644	1020	18	0	19	0	0	logfile
✔	9LRB	63324	2025-09-17	2025-01-30	2.77	2.92	2.83	2.9	0.002	0.47	0.0	0.04	14.23	0.00	2.243	2.73	0.91	1.8	98.2	0.0	1.14	0.69	0.80	3.40	2.9	0.003	0.58	0.0	0.04	16.72	0.00	2.575	4.91	2.63	3.0	97.0	0.0	1.33	2.01	0.70	0.82	3.21	8102	1018	6	0	1	0	0	logfile
✔	9LRE	63327	2025-09-17	2025-01-30	2.84	2.93	2.81	2.9	0.003	0.52	0.0	0.04	12.90	0.00	2.209	3.13	0.31	2.8	97.2	0.0	0.15	0.70	0.80	3.87	2.9	0.003	0.58	0.0	0.04	16.08	0.00	2.549	5.69	2.18	2.5	97.5	0.0	1.24	1.17	0.70	0.81	3.31	8845	1118	6	0	1	1	0	logfile
✔	9LRC	63325	2025-09-17	2025-01-30	2.84	3.01	2.84	3.0	0.002	0.49	0.0	0.03	13.88	0.00	2.464	1.92	0.00	2.5	97.5	0.0	3.42	0.62	0.79	3.92	3.0	0.004	0.65	0.0	0.04	15.39	0.01	2.591	4.70	1.58	2.5	97.5	0.0	2.53	0.38	0.61	0.80	3.87	2328	282	2	0	1	1	0	logfile
✔	9LRD	63326	2025-09-17	2025-01-30	3.23	3.43	3.26	3.3	0.003	0.55	0.0	0.04	13.73	0.00	2.247	5.53	0.10	6.0	94.0	0.0	-1.44	0.63	0.73	1.63	3.4	0.003	0.72	0.0	0.04	16.02	0.00	2.468	8.24	2.62	3.5	96.5	0.0	0.17	0.87	0.65	0.74	1.47	8725	1103	6	0	1	0	0	logfile
✔	9i65	52650	2025-09-17	2025-01-29	4.1	4.36	3.98	4.4	0.003	0.66	0.0	0.05	11.38	0.00	2.162	11.35	0.00	11.3	88.2	0.5	-1.25	0.69	0.75	—	4.4	0.004	0.75	0.0	0.05	11.48	0.00	2.373	7.84	0.00	12.3	87.3	0.4	-0.84	0.56	0.72	0.76	—	8433	1215	9	0	0	0	0	logfile
✔	9i6B	52652	2025-09-17	2025-01-29	2.7	2.86	2.71	2.9	0.007	0.90	0.0	0.06	21.11	0.02	2.288	6.28	0.00	1.0	99.0	0.0	0.90	0.58	0.83	5.23	2.9	0.003	0.54	0.0	0.04	15.82	0.00	2.464	4.62	1.09	1.4	98.6	0.0	2.50	0.46	0.58	0.84	4.16	8644	1020	18	0	19	0	0	logfile
✔	9i62	52646	2025-09-19	2025-01-29	2.64	3.42	2.78	3.2	0.006	0.48	0.0	0.04	14.93	0.00	2.112	5.02	0.49	1.6	98.4	0.0	0.74	0.81	0.89	4.84	3.2	0.004	0.54	0.0	0.04	17.52	0.00	2.163	5.95	0.89	1.2	98.8	0.0	1.34	0.87	0.79	0.87	3.80	24205	2831	21	108	27	0	0	logfile
✔	9N2E	48836	2025-09-17	2025-01-28	3.7	2.33	3.63	2.2	0.004	0.65	0.0	0.05	18.28	0.00	2.520	8.46	3.59	2.9	97.1	0.0	-0.02	0.68	0.72	2.37	2.2	0.002	0.62	0.0	0.04	18.22	0.00	2.572	6.50	3.02	2.7	97.3	0.0	0.36	0.34	0.67	0.71	2.27	4928	613	2	0	0	0	0	logfile
✘	9N2F	48837	2025-09-17	2025-01-28	3.5	2.39	3.39	2.2	0.004	0.71	1.0	0.05	18.69	0.00	2.415	10.57	5.19	6.3	93.5	0.2	-0.74	0.70	0.74	2.72	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7600	948	2	0	0	0	0	logfile
✔	9i5H	52629	2025-09-19	2025-01-28	2.7	3.84	3.00	3.6	0.008	0.68	0.0	0.05	12.01	0.00	2.199	5.93	0.27	4.9	95.0	0.1	0.45	0.50	0.85	4.30	3.6	0.004	0.63	0.0	0.05	15.22	0.00	2.516	4.92	1.59	3.6	96.4	0.0	1.05	1.05	0.52	0.87	3.42	23324	3111	17	0	0	0	0	logfile
✘	9N2D	48835	2025-09-18	2025-01-28	2.7	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18488	2284	15	0	18	16	0	logfile
✔	9N1Y	48824	2025-09-18	2025-01-27	3.23	4.00	3.37	3.8	0.003	0.56	0.0	0.04	14.54	0.00	2.268	3.23	1.17	3.9	96.0	0.1	1.41	0.66	0.81	1.46	3.8	0.002	0.50	0.0	0.04	15.27	0.00	2.435	3.44	1.27	3.7	96.2	0.1	1.83	0.35	0.66	0.81	1.14	19216	1230	1	0	0	0	9645	logfile
✔	9N0X	48797	2025-09-17	2025-01-24	3.3	3.55	3.37	3.6	0.008	0.96	0.0	0.04	23.18	0.01	2.210	8.89	0.29	4.0	96.0	0.0	1.18	0.64	0.77	1.69	3.6	0.002	0.50	0.0	0.04	19.27	0.00	2.443	5.39	2.03	3.2	96.8	0.0	1.83	0.80	0.63	0.77	1.33	6588	760	4	0	8	0	0	logfile
✔	9N0Z	48799	2025-09-17	2025-01-24	3.5	3.76	3.54	3.7	0.006	0.78	0.0	0.05	16.26	0.02	1.559	9.85	0.00	9.8	90.2	0.0	-2.66	0.72	0.82	1.59	3.7	0.004	0.93	1.0	0.04	17.79	0.00	2.124	8.32	3.63	6.1	93.8	0.1	-1.17	1.10	0.72	0.83	1.41	10847	1355	4	0	0	0	0	logfile
✘	9N13	48804	2025-09-17	2025-01-24	3.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4424	269	4	0	12	0	2083	logfile
✘	9N0D	48781	2025-09-18	2025-01-24	3.8	3.98	3.75	4.0	0.003	0.79	6.0	0.05	17.50	0.00	2.190	12.23	4.85	7.4	92.6	0.0	-0.03	0.63	0.75	1.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16989	2079	30	0	36	0	0	logfile
✔	9N17	48808	2025-09-17	2025-01-24	3.09	3.77	2.85	3.6	0.015	1.66	0.0	0.10	14.20	0.01	2.570	0.22	0.40	8.3	91.4	0.4	-1.34	0.48	0.77	5.31	3.5	0.003	0.61	0.0	0.04	12.02	0.00	2.416	1.30	1.21	6.8	93.2	0.0	-0.77	0.72	0.50	0.81	5.07	4454	268	4	0	13	0	2095	logfile
✔	9N0Y	48798	2025-09-17	2025-01-24	3.71	3.97	3.77	3.9	0.004	0.71	0.0	0.04	14.46	0.00	1.884	8.10	0.00	10.0	90.0	0.0	-3.71	0.79	0.84	1.21	3.9	0.003	0.64	0.0	0.04	16.32	0.00	2.525	6.38	1.66	5.5	94.5	0.0	-1.10	0.63	0.80	0.84	0.99	10792	1350	4	0	0	0	0	logfile

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