Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9MZU	48769	2025-09-18	2025-01-23	2.4	3.21	2.49	2.9	0.003	0.53	0.0	0.04	17.08	0.00	2.048	12.02	2.00	3.2	96.7	0.1	0.29	0.75	0.89	4.12	2.9	0.003	0.54	0.0	0.04	16.69	0.00	2.009	12.22	1.68	3.5	96.5	0.0	0.64	0.43	0.70	0.89	3.84	17517	2094	21	0	39	3	6	logfile
✔	9MZH	45896	2025-09-18	2025-01-23	2.99	3.25	3.06	3.3	0.002	0.53	0.0	0.04	18.39	0.00	2.115	9.11	0.14	3.0	96.9	0.1	1.98	0.65	0.77	2.30	3.3	0.003	0.58	0.0	0.04	18.71	0.00	2.393	7.69	4.00	3.5	96.5	0.1	1.81	1.04	0.66	0.81	2.14	12643	1575	7	0	0	0	0	logfile
✔	9LoN	63250	2025-09-17	2025-01-23	3.0	2.99	2.19	3.1	0.009	0.65	0.0	0.05	13.10	0.00	2.359	2.29	0.00	4.7	95.3	0.0	-3.50	0.45	0.92	6.73	3.1	0.002	0.41	0.0	0.05	15.18	0.00	2.628	0.35	0.69	1.0	99.0	0.0	-1.32	0.34	0.43	0.92	6.67	2772	396	6	0	0	0	0	logfile
✔	9LNG	63235	2025-09-18	2025-01-21	2.45	2.67	2.54	2.7	0.003	0.59	0.0	0.04	13.39	0.00	2.108	13.38	0.17	3.0	97.0	0.0	-0.48	0.66	0.83	4.69	2.7	0.004	0.62	0.0	0.05	16.38	0.00	2.524	11.06	1.69	4.1	95.9	0.0	-0.07	0.90	0.68	0.84	4.39	15141	1977	9	0	0	0	0	logfile
✔	9LMo	63219	2025-09-17	2025-01-19	3.2	3.60	2.85	3.4	0.020	1.63	0.0	0.08	10.36	0.01	1.882	6.75	0.13	2.6	97.4	0.0	0.92	0.72	0.79	2.50	3.4	0.006	1.08	1.0	0.05	15.78	0.01	2.380	10.60	2.40	2.7	97.3	0.0	2.11	3.12	0.75	0.85	2.05	7332	939	4	0	0	0	0	logfile
✔	9MW8	48697	2025-09-17	2025-01-17	3.3	4.53	3.31	4.0	0.002	0.63	0.0	0.04	18.27	0.00	2.077	13.98	1.33	3.3	96.6	0.2	1.50	0.85	0.75	0.46	3.9	0.002	0.64	0.0	0.04	18.42	0.00	2.496	10.59	1.50	2.8	96.9	0.3	1.73	1.30	0.85	0.76	0.43	6419	647	4	54	2	0	0	logfile
✔	9MX1	48707	2025-09-18	2025-01-17	3.2	2.89	3.21	3.1	0.004	0.77	0.0	0.05	14.34	0.00	2.297	4.34	0.04	6.4	93.6	0.0	-1.79	0.60	0.74	2.41	3.0	0.003	0.60	0.0	0.04	15.91	0.00	2.467	8.31	2.24	6.1	93.9	0.0	-0.77	2.49	0.64	0.79	2.51	20832	2594	3	0	0	0	0	logfile
✔	9MX5	48710	2025-09-17	2025-01-17	3.1	3.96	3.22	3.7	0.003	0.56	0.0	0.04	18.21	0.00	2.169	8.83	1.32	4.2	95.7	0.2	2.06	0.84	0.85	1.94	3.6	0.006	0.64	0.0	0.03	18.16	0.00	2.473	8.11	1.49	3.2	96.6	0.2	2.18	0.99	0.83	0.84	1.16	6463	652	4	54	3	0	0	logfile
✔	9LLD	63198	2025-09-18	2025-01-17	3.6	4.83	3.56	3.6	0.003	0.56	0.0	0.04	14.89	0.00	2.221	8.66	0.07	6.3	93.7	0.0	-0.60	0.86	0.61	1.72	3.7	0.004	0.57	0.0	0.04	15.08	0.00	2.479	6.60	4.21	7.4	92.6	0.0	-0.77	1.07	0.89	0.87	2.00	16287	2334	9	0	0	0	0	logfile
✔	9MX3	48708	2025-09-17	2025-01-17	3.0	3.93	3.03	3.5	0.003	0.63	0.0	0.04	17.07	0.00	2.208	6.38	1.68	3.8	96.2	0.0	1.64	0.86	0.83	1.60	3.5	0.002	0.60	0.0	0.04	17.27	0.00	2.241	5.09	2.35	3.3	96.7	0.0	2.17	0.33	0.86	0.82	1.11	5929	641	4	33	1	0	0	logfile
✘	9MW0	48676	2025-09-18	2025-01-16	3.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19668	2589	9	0	3	0	0	logfile
✔	9LKX	63187	2025-09-17	2025-01-16	3.76	3.91	3.78	3.8	0.003	0.64	0.0	0.04	14.63	0.01	2.286	7.56	0.18	7.3	92.7	0.0	-0.75	0.70	0.76	1.03	3.8	0.004	0.68	0.0	0.04	17.33	0.00	2.364	13.94	3.06	7.1	92.9	0.0	0.32	1.10	0.71	0.78	1.18	5105	650	2	0	0	0	0	logfile
✔	9MW7	48691	2025-09-17	2025-01-16	3.4	4.43	3.48	3.9	0.008	0.62	0.0	0.04	18.41	0.00	2.138	15.61	1.01	9.2	90.6	0.2	-1.07	0.83	0.66	0.86	3.9	0.003	0.68	0.0	0.04	18.69	0.00	2.447	14.09	1.83	10.0	89.6	0.4	-1.36	0.97	0.83	0.67	1.05	5504	535	4	54	2	0	0	logfile
✔	9MW6	48678	2025-09-17	2025-01-16	3.4	4.48	3.46	4.2	0.004	0.62	0.0	0.04	17.58	0.00	2.098	12.14	2.43	6.4	93.6	0.0	-0.15	0.78	0.78	1.20	4.1	0.002	0.62	0.0	0.04	17.86	0.00	2.486	8.98	2.43	6.6	93.4	0.0	-0.12	0.93	0.78	0.78	1.22	5473	535	3	54	0	0	0	logfile
✘	9MVZ	48675	2025-09-19	2025-01-16	2.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26415	3468	12	0	3	0	0	logfile
✔	9MV0	48650	2025-09-18	2025-01-15	4.2	4.45	4.22	4.3	0.003	0.58	0.0	0.04	13.33	0.00	2.030	7.59	0.00	7.8	92.2	0.0	-0.34	0.83	0.80	—	4.3	0.004	0.70	0.0	0.04	13.97	0.00	2.384	8.07	0.19	7.8	92.2	0.1	-0.43	0.40	0.84	0.80	—	14631	1775	10	0	16	0	0	logfile
✔	9LiU	63123	2025-09-18	2025-01-14	2.7	3.43	3.04	3.2	0.014	0.89	0.0	0.05	24.81	0.01	2.011	14.01	3.71	6.0	94.0	0.0	-0.19	0.88	0.85	2.85	3.2	0.004	0.63	0.0	0.04	24.52	0.00	1.933	8.53	1.65	4.7	95.3	0.0	1.23	1.59	0.86	0.83	1.86	19587	1678	14	292	4	0	0	logfile
✔	9MUo	48639	2025-09-17	2025-01-14	3.3	3.88	3.31	3.7	0.005	0.81	0.0	0.05	17.64	0.01	2.216	14.57	1.45	5.3	94.3	0.4	-0.28	0.61	0.85	1.70	3.7	0.003	0.70	0.0	0.04	17.53	0.00	2.322	12.66	4.01	4.7	95.3	0.0	0.62	1.04	0.61	0.86	1.77	8410	1012	7	8	1	0	0	logfile
✔	9LJ2	63131	2025-09-18	2025-01-14	2.98	3.63	3.05	3.3	0.005	0.73	0.0	0.04	24.54	0.00	2.044	15.37	0.18	8.0	92.0	0.0	-0.69	0.87	0.84	1.94	3.3	0.003	0.67	0.0	0.04	25.02	0.00	2.053	11.38	1.48	6.5	93.5	0.0	0.36	0.45	0.88	0.85	1.17	21131	1861	14	294	4	0	0	logfile
✔	9MUW	48649	2025-09-18	2025-01-14	2.99	3.21	3.03	3.3	0.002	0.59	0.0	0.04	17.21	0.00	2.136	8.54	0.37	2.9	96.8	0.3	1.61	0.67	0.80	2.74	3.3	0.003	0.61	0.0	0.04	17.77	0.00	2.543	7.67	2.23	2.9	96.8	0.3	1.86	1.35	0.67	0.81	2.45	11978	1491	7	0	0	0	0	logfile

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