Table showing results for September 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	9EFZ	47982	2025-09-18	2024-11-20	1.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14477	1700	15	0	15	382	0	logfile
✔	9EF0	40857	2025-09-17	2024-11-19	3.33	3.49	3.32	3.5	0.004	0.59	0.0	0.04	16.92	0.00	2.198	10.73	0.96	3.6	96.4	0.0	-0.60	0.70	0.79	1.99	3.5	0.003	0.58	0.0	0.04	18.05	0.00	2.487	10.12	3.06	4.1	95.9	0.0	-0.36	0.83	0.69	0.79	1.88	4993	613	2	0	2	0	0	logfile
✔	9EF2	47968	2025-09-17	2024-11-19	3.36	3.95	3.40	3.8	0.004	0.64	0.0	0.05	13.75	0.01	1.985	4.29	2.29	4.8	95.2	0.0	-1.21	0.83	0.84	3.49	3.8	0.003	0.58	0.0	0.04	13.25	0.00	2.031	5.10	3.17	4.6	95.4	0.0	-0.93	1.19	0.84	0.85	2.93	5756	744	10	0	24	0	0	logfile
✔	9KNW	62464	2025-09-17	2024-11-19	3.41	3.70	3.47	3.7	0.009	0.93	0.0	0.04	19.17	0.00	2.299	14.27	1.48	2.1	97.9	0.0	-1.35	0.53	0.77	1.61	3.8	0.005	1.43	1.0	0.05	18.05	0.01	2.418	10.47	3.33	1.5	98.5	0.0	1.96	0.97	0.50	0.77	1.42	2747	333	5	0	2	0	0	logfile
✔	9KNQ	62459	2025-09-18	2024-11-19	3.0	3.91	3.27	3.7	0.007	0.65	0.0	0.04	16.14	0.00	2.049	8.77	6.94	7.6	92.4	0.0	-2.47	0.80	0.85	2.49	3.7	0.004	0.71	0.0	0.04	17.09	0.00	2.334	6.96	3.54	5.7	94.3	0.0	-0.02	0.52	0.77	0.82	2.36	12606	1581	6	0	2	0	0	logfile
✔	9KNY	62466	2025-09-17	2024-11-19	3.4	3.70	3.34	3.7	0.009	0.93	0.0	0.04	19.44	0.00	2.299	12.28	4.44	2.1	97.9	0.0	-1.33	0.53	0.77	1.61	3.7	0.005	1.45	1.0	0.04	18.10	0.01	2.404	12.82	5.19	1.2	98.8	0.0	1.55	0.76	0.51	0.78	1.50	2747	333	5	0	2	0	0	logfile
✔	9KNX	62465	2025-09-17	2024-11-19	3.72	4.01	3.77	4.0	0.011	1.06	0.0	0.06	16.42	0.01	2.250	9.84	0.38	3.7	96.3	0.0	-1.45	0.48	0.70	1.20	4.0	0.003	0.57	0.0	0.04	16.64	0.00	2.473	8.17	1.88	2.2	97.8	0.0	2.31	0.90	0.46	0.71	0.65	2675	329	4	0	1	0	0	logfile
✔	9EEA	47953	2025-09-18	2024-11-18	3.36	4.21	3.71	4.2	0.003	0.59	0.0	0.04	17.73	0.00	2.020	11.52	0.40	6.8	93.2	0.0	-0.74	0.69	0.63	0.54	4.2	0.003	0.70	0.0	0.04	16.68	0.00	2.278	12.95	4.17	6.0	94.0	0.0	-0.47	0.96	0.72	0.73	0.10	14648	1011	6	0	1	0	7098	logfile
✔	9EE9	47952	2025-09-18	2024-11-18	3.16	3.84	3.49	3.9	0.003	0.57	0.0	0.04	17.06	0.00	2.079	10.62	0.00	4.6	95.3	0.1	0.59	0.70	0.77	1.15	3.9	0.003	0.59	0.0	0.04	16.53	0.00	2.341	8.39	2.41	5.7	94.2	0.1	0.69	0.99	0.70	0.77	1.19	14746	1020	6	0	1	0	7140	logfile
✔	9EE8	47951	2025-09-18	2024-11-18	2.63	3.33	2.91	3.2	0.005	0.61	1.0	0.04	16.08	0.00	2.221	4.17	0.26	2.7	97.3	0.0	1.26	0.73	0.87	3.21	3.2	0.004	0.53	0.0	0.04	16.22	0.00	2.401	3.29	1.72	2.8	97.2	0.0	1.43	0.55	0.69	0.86	3.13	14831	1025	6	0	1	0	7180	logfile
✔	9KMi	62434	2025-09-17	2024-11-16	3.05	3.34	3.04	3.3	0.009	1.01	0.0	0.06	14.30	0.01	2.256	7.01	0.15	6.0	94.0	0.0	-2.32	0.60	0.84	3.56	3.3	0.004	0.63	0.0	0.04	15.28	0.00	2.172	9.01	2.62	5.3	94.7	0.0	-0.13	0.33	0.60	0.86	2.90	6026	764	4	0	4	1	0	logfile
✔	9EDB	47943	2025-09-18	2024-11-16	3.1	3.60	3.19	3.5	0.005	0.90	0.0	0.05	19.80	0.01	2.248	4.84	0.53	4.1	95.9	0.0	-2.05	0.80	0.86	1.89	3.5	0.003	0.57	0.0	0.04	19.79	0.00	2.507	7.23	1.93	2.7	97.3	0.0	0.45	0.96	0.80	0.87	2.22	12636	1342	4	122	0	0	0	logfile
✔	9KMM	62438	2025-09-17	2024-11-16	3.3	3.62	3.28	3.6	0.006	0.93	0.0	0.05	13.93	0.01	2.221	7.55	0.00	6.4	93.6	0.0	-2.31	0.62	0.79	2.87	3.6	0.004	0.63	0.0	0.04	15.58	0.01	2.264	10.52	1.88	6.6	93.4	0.0	-0.71	0.34	0.63	0.83	2.39	5931	753	4	0	4	0	0	logfile
✔	9ED9	47941	2025-09-18	2024-11-16	2.95	3.41	3.02	3.3	0.004	0.86	0.0	0.05	19.24	0.01	2.258	4.10	0.52	3.3	96.7	0.0	-0.89	0.83	0.89	2.91	3.2	0.003	0.57	0.0	0.04	19.17	0.00	2.473	6.67	1.55	3.2	96.8	0.0	1.07	0.95	0.80	0.88	2.84	13785	1337	5	143	0	0	0	logfile
✘	9EDC	47944	2025-09-17	2024-11-16	4.18	5.14	4.40	5.9	0.005	0.88	0.0	0.05	13.87	0.01	2.263	2.91	0.00	2.5	97.3	0.2	-1.43	0.70	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4062	498	3	0	1	0	0	logfile
✔	9EDA	47942	2025-09-17	2024-11-16	2.88	3.41	2.92	3.2	0.006	0.98	0.0	0.06	19.26	0.01	2.193	7.52	0.41	3.2	96.8	0.0	-1.21	0.74	0.78	2.68	3.3	0.004	0.62	0.0	0.04	19.87	0.00	2.472	7.61	2.97	2.8	97.2	0.0	0.47	1.47	0.79	0.85	3.34	12079	1150	6	138	0	1	0	logfile
✔	9KMK	62436	2025-09-17	2024-11-16	3.06	3.31	3.07	3.3	0.007	0.94	0.0	0.06	13.80	0.01	2.256	6.17	0.00	5.1	94.9	0.0	-1.99	0.63	0.83	3.28	3.3	0.004	0.66	0.0	0.04	15.55	0.00	2.444	7.28	2.22	4.1	95.9	0.0	0.19	1.21	0.64	0.86	2.79	5872	746	4	0	1	0	0	logfile
✔	9KML	62437	2025-09-17	2024-11-16	3.11	3.35	3.13	3.4	0.006	0.88	0.0	0.05	13.75	0.01	2.235	7.11	0.16	4.9	95.1	0.0	-1.86	0.61	0.82	3.20	3.4	0.003	0.59	0.0	0.04	15.39	0.00	2.563	9.76	2.37	4.3	95.7	0.0	0.27	0.92	0.59	0.84	2.62	5872	746	4	0	1	0	0	logfile
✘	9KMJ	62435	2025-09-17	2024-11-16	3.1	3.32	3.08	3.3	0.006	0.88	0.0	0.05	13.75	0.01	2.251	6.35	0.00	4.0	96.0	0.0	-1.43	0.62	0.82	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6019	762	4	0	4	1	0	logfile
✔	9KLo	62411	2025-09-18	2024-11-15	2.81	3.37	2.99	3.3	0.006	0.67	0.0	0.05	19.58	0.00	2.122	3.64	0.19	3.7	96.3	0.0	1.11	0.74	0.83	3.37	3.2	0.004	0.55	0.0	0.04	20.11	0.00	2.200	2.82	0.83	3.3	96.7	0.0	1.93	1.71	0.73	0.83	2.89	14372	1396	8	168	4	4	0	logfile

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